Experiment: KB with Chrysophanol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0673 and Psyr_0674 are separated by 532 nucleotides Psyr_0674 and Psyr_0675 are separated by 32 nucleotides Psyr_0675 and Psyr_0676 are separated by 94 nucleotides
Psyr_0673: Psyr_0673 - nucleoside ABC transporter ATP-binding protein, at 762,487 to 764,040
_0673
Psyr_0674: Psyr_0674 - Protein of unknown function UPF0029, at 764,573 to 765,166
_0674
Psyr_0675: Psyr_0675 - transcriptional regulator, TetR family, at 765,199 to 765,861
_0675
Psyr_0676: Psyr_0676 - Xanthine/uracil permease family, at 765,956 to 767,353
_0676
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 763.653 kb on - strand, within Psyr_0673 at 763.874 kb on + strand, within Psyr_0673 at 763.874 kb on + strand, within Psyr_0673 at 763.875 kb on - strand, within Psyr_0673 at 763.875 kb on - strand, within Psyr_0673 at 763.875 kb on - strand, within Psyr_0673 at 763.998 kb on + strand at 763.999 kb on - strand at 764.257 kb on - strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.333 kb on - strand at 764.333 kb on - strand at 764.333 kb on - strand at 764.376 kb on - strand at 764.392 kb on - strand at 764.424 kb on + strand at 764.513 kb on - strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.550 kb on + strand at 764.550 kb on + strand at 764.550 kb on + strand at 764.550 kb on + strand at 764.551 kb on - strand at 764.551 kb on - strand at 764.551 kb on - strand at 764.844 kb on + strand, within Psyr_0674 at 764.844 kb on + strand, within Psyr_0674 at 764.844 kb on + strand, within Psyr_0674 at 764.845 kb on - strand, within Psyr_0674 at 765.200 kb on + strand at 765.200 kb on + strand at 765.200 kb on + strand at 765.201 kb on - strand at 765.201 kb on - strand at 765.201 kb on - strand at 765.333 kb on - strand, within Psyr_0675 at 765.464 kb on + strand, within Psyr_0675 at 765.464 kb on + strand, within Psyr_0675 at 765.558 kb on + strand, within Psyr_0675 at 765.559 kb on - strand, within Psyr_0675 at 765.560 kb on + strand, within Psyr_0675 at 765.561 kb on - strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.666 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.680 kb on + strand, within Psyr_0675 at 765.680 kb on + strand, within Psyr_0675 at 765.680 kb on + strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.904 kb on + strand at 765.905 kb on - strand at 765.957 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chrysophanol 10 mM remove 763,653 - Psyr_0673 0.75 +0.7 763,874 + Psyr_0673 0.89 +0.9 763,874 + Psyr_0673 0.89 -0.8 763,875 - Psyr_0673 0.89 -0.5 763,875 - Psyr_0673 0.89 -0.1 763,875 - Psyr_0673 0.89 -2.0 763,998 + +0.5 763,999 - +0.5 764,257 - -0.7 764,332 + +0.2 764,332 + +2.8 764,332 + -0.7 764,332 + +1.2 764,333 - -0.8 764,333 - +1.1 764,333 - -0.4 764,376 - -0.2 764,392 - +1.2 764,424 + +0.8 764,513 - +0.4 764,533 + -0.1 764,533 + -0.4 764,533 + -1.0 764,533 + +3.2 764,533 + -0.4 764,533 + +1.7 764,533 + -0.4 764,533 + +0.7 764,533 + +0.2 764,533 + +1.4 764,533 + +0.6 764,533 + -0.6 764,534 - +0.0 764,534 - +0.9 764,534 - -2.9 764,534 - -0.6 764,534 - -2.2 764,550 + +0.5 764,550 + -1.4 764,550 + -0.5 764,550 + +1.5 764,551 - -0.6 764,551 - -0.5 764,551 - -0.4 764,844 + Psyr_0674 0.46 +1.6 764,844 + Psyr_0674 0.46 +0.3 764,844 + Psyr_0674 0.46 -0.1 764,845 - Psyr_0674 0.46 -0.3 765,200 + -1.0 765,200 + -0.2 765,200 + +0.2 765,201 - -1.4 765,201 - +0.4 765,201 - -0.2 765,333 - Psyr_0675 0.20 +0.7 765,464 + Psyr_0675 0.40 +2.2 765,464 + Psyr_0675 0.40 +0.9 765,558 + Psyr_0675 0.54 -0.3 765,559 - Psyr_0675 0.54 -1.4 765,560 + Psyr_0675 0.54 -1.9 765,561 - Psyr_0675 0.55 +0.4 765,653 + Psyr_0675 0.68 +0.1 765,653 + Psyr_0675 0.68 +0.6 765,653 + Psyr_0675 0.68 +0.4 765,653 + Psyr_0675 0.68 +0.2 765,653 + Psyr_0675 0.68 +0.8 765,653 + Psyr_0675 0.68 +0.6 765,653 + Psyr_0675 0.68 -1.9 765,653 + Psyr_0675 0.68 -2.6 765,653 + Psyr_0675 0.68 +0.6 765,653 + Psyr_0675 0.68 +1.2 765,653 + Psyr_0675 0.68 -1.9 765,654 - Psyr_0675 0.69 -0.2 765,654 - Psyr_0675 0.69 +1.4 765,654 - Psyr_0675 0.69 -0.2 765,654 - Psyr_0675 0.69 -2.7 765,654 - Psyr_0675 0.69 +0.9 765,654 - Psyr_0675 0.69 -0.9 765,654 - Psyr_0675 0.69 +0.5 765,654 - Psyr_0675 0.69 +1.1 765,654 - Psyr_0675 0.69 -0.3 765,654 - Psyr_0675 0.69 +0.9 765,666 + Psyr_0675 0.70 -0.3 765,677 + Psyr_0675 0.72 +0.1 765,677 + Psyr_0675 0.72 -1.1 765,677 + Psyr_0675 0.72 +0.0 765,677 + Psyr_0675 0.72 +1.4 765,677 + Psyr_0675 0.72 -0.2 765,678 - Psyr_0675 0.72 +2.8 765,678 - Psyr_0675 0.72 -1.0 765,678 - Psyr_0675 0.72 +1.1 765,678 - Psyr_0675 0.72 -1.5 765,678 - Psyr_0675 0.72 +0.2 765,678 - Psyr_0675 0.72 -1.4 765,680 + Psyr_0675 0.73 +0.6 765,680 + Psyr_0675 0.73 +1.3 765,680 + Psyr_0675 0.73 +0.4 765,681 - Psyr_0675 0.73 -0.4 765,681 - Psyr_0675 0.73 +2.0 765,681 - Psyr_0675 0.73 +0.8 765,681 - Psyr_0675 0.73 -0.2 765,681 - Psyr_0675 0.73 +1.2 765,681 - Psyr_0675 0.73 +0.4 765,681 - Psyr_0675 0.73 +0.6 765,904 + -0.3 765,905 - +0.4 765,957 + +1.1
Or see this region's nucleotide sequence