Experiment: Dodecanol and Rhamnolipid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybgH and ybgI are separated by 270 nucleotides ybgI and ybgJ are separated by 22 nucleotides ybgJ and ybgK overlap by 7 nucleotides
b0709: ybgH - predicted transporter (NCBI), at 740,298 to 741,779
ybgH
b0710: ybgI - conserved metal-binding protein (NCBI), at 742,050 to 742,793
ybgI
b0711: ybgJ - predicted enzyme subunit (NCBI), at 742,816 to 743,472
ybgJ
b0712: ybgK - predicted enzyme subunit (NCBI), at 743,466 to 744,398
ybgK
Position (kb) 742
743 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 741.071 kb on - strand, within ybgH at 741.071 kb on - strand, within ybgH at 741.071 kb on - strand, within ybgH at 741.082 kb on + strand, within ybgH at 741.082 kb on + strand, within ybgH at 741.090 kb on - strand, within ybgH at 741.092 kb on + strand, within ybgH at 741.092 kb on + strand, within ybgH at 741.100 kb on - strand, within ybgH at 741.100 kb on - strand, within ybgH at 741.102 kb on + strand, within ybgH at 741.104 kb on - strand, within ybgH at 741.225 kb on - strand, within ybgH at 741.225 kb on - strand, within ybgH at 741.275 kb on + strand, within ybgH at 741.275 kb on + strand, within ybgH at 741.280 kb on - strand, within ybgH at 741.334 kb on + strand, within ybgH at 741.344 kb on + strand, within ybgH at 741.344 kb on + strand, within ybgH at 741.408 kb on - strand, within ybgH at 741.442 kb on - strand, within ybgH at 741.494 kb on - strand, within ybgH at 741.528 kb on - strand, within ybgH at 741.616 kb on - strand, within ybgH at 741.680 kb on + strand at 741.744 kb on - strand at 741.758 kb on + strand at 741.766 kb on - strand at 741.831 kb on - strand at 741.987 kb on + strand at 742.010 kb on + strand at 742.010 kb on + strand at 742.019 kb on + strand at 742.126 kb on + strand, within ybgI at 742.191 kb on - strand, within ybgI at 742.191 kb on - strand, within ybgI at 742.292 kb on - strand, within ybgI at 742.357 kb on + strand, within ybgI at 742.357 kb on + strand, within ybgI at 742.438 kb on + strand, within ybgI at 742.541 kb on + strand, within ybgI at 742.541 kb on + strand, within ybgI at 742.615 kb on + strand, within ybgI at 742.699 kb on - strand, within ybgI at 742.753 kb on + strand at 742.761 kb on - strand at 742.761 kb on - strand at 742.973 kb on - strand, within ybgJ at 743.091 kb on + strand, within ybgJ at 743.091 kb on + strand, within ybgJ at 743.091 kb on + strand, within ybgJ at 743.185 kb on - strand, within ybgJ at 743.185 kb on - strand, within ybgJ at 743.185 kb on - strand, within ybgJ at 743.248 kb on - strand, within ybgJ at 743.250 kb on + strand, within ybgJ at 743.250 kb on + strand, within ybgJ at 743.302 kb on + strand, within ybgJ at 743.369 kb on + strand, within ybgJ at 743.374 kb on + strand, within ybgJ at 743.461 kb on + strand at 743.489 kb on + strand at 743.492 kb on + strand at 743.492 kb on + strand at 743.492 kb on + strand at 743.500 kb on - strand at 743.500 kb on - strand at 743.504 kb on + strand at 743.515 kb on - strand at 743.538 kb on + strand at 743.538 kb on + strand at 743.539 kb on + strand at 743.539 kb on + strand at 743.595 kb on - strand, within ybgK at 743.595 kb on - strand, within ybgK at 743.642 kb on + strand, within ybgK
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecanol and Rhamnolipid (C) remove 741,071 - ybgH b0709 0.52 -3.2 741,071 - ybgH b0709 0.52 -2.4 741,071 - ybgH b0709 0.52 -1.4 741,082 + ybgH b0709 0.53 +0.3 741,082 + ybgH b0709 0.53 -0.2 741,090 - ybgH b0709 0.53 +0.1 741,092 + ybgH b0709 0.54 +0.0 741,092 + ybgH b0709 0.54 -0.5 741,100 - ybgH b0709 0.54 -1.2 741,100 - ybgH b0709 0.54 +1.2 741,102 + ybgH b0709 0.54 -0.4 741,104 - ybgH b0709 0.54 +0.8 741,225 - ybgH b0709 0.63 -0.4 741,225 - ybgH b0709 0.63 +0.8 741,275 + ybgH b0709 0.66 -1.1 741,275 + ybgH b0709 0.66 +0.6 741,280 - ybgH b0709 0.66 -0.2 741,334 + ybgH b0709 0.70 -3.2 741,344 + ybgH b0709 0.71 -4.0 741,344 + ybgH b0709 0.71 -0.3 741,408 - ybgH b0709 0.75 -2.3 741,442 - ybgH b0709 0.77 -0.2 741,494 - ybgH b0709 0.81 +0.0 741,528 - ybgH b0709 0.83 +0.1 741,616 - ybgH b0709 0.89 -0.6 741,680 + +0.3 741,744 - +0.7 741,758 + -0.1 741,766 - +0.7 741,831 - +0.1 741,987 + -2.0 742,010 + -0.5 742,010 + +1.6 742,019 + -0.6 742,126 + ybgI b0710 0.10 +2.4 742,191 - ybgI b0710 0.19 -0.1 742,191 - ybgI b0710 0.19 +0.7 742,292 - ybgI b0710 0.33 -1.1 742,357 + ybgI b0710 0.41 +1.1 742,357 + ybgI b0710 0.41 -0.6 742,438 + ybgI b0710 0.52 +2.6 742,541 + ybgI b0710 0.66 +0.2 742,541 + ybgI b0710 0.66 +0.9 742,615 + ybgI b0710 0.76 +1.4 742,699 - ybgI b0710 0.87 +0.2 742,753 + -0.9 742,761 - +1.0 742,761 - +0.0 742,973 - ybgJ b0711 0.24 +0.0 743,091 + ybgJ b0711 0.42 -0.3 743,091 + ybgJ b0711 0.42 +1.1 743,091 + ybgJ b0711 0.42 -1.9 743,185 - ybgJ b0711 0.56 -1.9 743,185 - ybgJ b0711 0.56 -1.7 743,185 - ybgJ b0711 0.56 -0.2 743,248 - ybgJ b0711 0.66 -0.6 743,250 + ybgJ b0711 0.66 +1.2 743,250 + ybgJ b0711 0.66 -0.7 743,302 + ybgJ b0711 0.74 -2.4 743,369 + ybgJ b0711 0.84 -0.5 743,374 + ybgJ b0711 0.85 +0.3 743,461 + +0.4 743,489 + +0.7 743,492 + +0.6 743,492 + +0.5 743,492 + -0.4 743,500 - +0.7 743,500 - +1.2 743,504 + -0.1 743,515 - +0.7 743,538 + -1.3 743,538 + -1.8 743,539 + +1.6 743,539 + +0.7 743,595 - ybgK b0712 0.14 +3.8 743,595 - ybgK b0712 0.14 -0.6 743,642 + ybgK b0712 0.19 +1.3
Or see this region's nucleotide sequence