Strain Fitness in Escherichia coli BW25113 around b1806

Experiment: Dodecanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfadD and yeaY are separated by 204 nucleotidesyeaY and yeaZ are separated by 39 nucleotidesyeaZ and yoaA are separated by 57 nucleotides b1805: fadD - acyl-CoA synthase (NCBI), at 1,886,085 to 1,887,770 fadD b1806: yeaY - predicted lipoprotein (NCBI), at 1,887,975 to 1,888,556 yeaY b1807: yeaZ - predicted peptidase (NCBI), at 1,888,596 to 1,889,291 yeaZ b1808: yoaA - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 1,889,349 to 1,891,259 yoaA Position (kb) 1887 1888 1889Strain fitness (log2 ratio) -3 -2 -1 0 1at 1886.976 kb on - strand, within fadDat 1886.976 kb on - strand, within fadDat 1887.085 kb on + strand, within fadDat 1887.087 kb on - strand, within fadDat 1887.098 kb on - strand, within fadDat 1887.130 kb on + strand, within fadDat 1887.130 kb on + strand, within fadDat 1887.187 kb on - strand, within fadDat 1887.187 kb on - strand, within fadDat 1887.261 kb on + strand, within fadDat 1887.261 kb on + strand, within fadDat 1887.321 kb on + strand, within fadDat 1887.381 kb on + strand, within fadDat 1887.381 kb on + strand, within fadDat 1887.445 kb on + strand, within fadDat 1887.453 kb on - strand, within fadDat 1887.453 kb on - strand, within fadDat 1887.455 kb on + strand, within fadDat 1887.455 kb on + strand, within fadDat 1887.461 kb on + strand, within fadDat 1887.762 kb on - strandat 1887.981 kb on + strandat 1888.207 kb on + strand, within yeaYat 1888.428 kb on - strand, within yeaYat 1888.428 kb on - strand, within yeaYat 1888.463 kb on + strand, within yeaYat 1888.586 kb on + strandat 1888.586 kb on + strandat 1889.333 kb on - strandat 1889.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecanol (C)
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1,886,976 - fadD b1805 0.53 -3.2
1,886,976 - fadD b1805 0.53 -2.0
1,887,085 + fadD b1805 0.59 -0.8
1,887,087 - fadD b1805 0.59 -0.9
1,887,098 - fadD b1805 0.60 -1.2
1,887,130 + fadD b1805 0.62 -1.4
1,887,130 + fadD b1805 0.62 -0.8
1,887,187 - fadD b1805 0.65 -1.7
1,887,187 - fadD b1805 0.65 -2.1
1,887,261 + fadD b1805 0.70 -0.2
1,887,261 + fadD b1805 0.70 -1.2
1,887,321 + fadD b1805 0.73 -1.5
1,887,381 + fadD b1805 0.77 -1.3
1,887,381 + fadD b1805 0.77 -0.6
1,887,445 + fadD b1805 0.81 -0.1
1,887,453 - fadD b1805 0.81 -2.2
1,887,453 - fadD b1805 0.81 -1.2
1,887,455 + fadD b1805 0.81 -3.4
1,887,455 + fadD b1805 0.81 -1.3
1,887,461 + fadD b1805 0.82 -3.2
1,887,762 - -0.5
1,887,981 + -0.3
1,888,207 + yeaY b1806 0.40 +0.4
1,888,428 - yeaY b1806 0.78 +0.7
1,888,428 - yeaY b1806 0.78 +0.6
1,888,463 + yeaY b1806 0.84 -0.6
1,888,586 + +0.9
1,888,586 + +0.6
1,889,333 - -0.1
1,889,364 - -0.1

Or see this region's nucleotide sequence