Strain Fitness in Escherichia coli BW25113 around b1617

Experiment: Dodecanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuidB and uidA overlap by 4 nucleotidesuidA and uidR are separated by 390 nucleotides b1616: uidB - glucuronide transporter (NCBI), at 1,690,914 to 1,692,287 uidB b1617: uidA - beta-D-glucuronidase (NCBI), at 1,692,284 to 1,694,095 uidA b1618: uidR - DNA-binding transcriptional repressor (NCBI), at 1,694,486 to 1,695,076 uidR Position (kb) 1692 1693 1694 1695Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1691.458 kb on + strand, within uidBat 1691.458 kb on + strand, within uidBat 1691.486 kb on + strand, within uidBat 1691.489 kb on - strand, within uidBat 1691.489 kb on - strand, within uidBat 1691.699 kb on - strand, within uidBat 1691.699 kb on - strand, within uidBat 1691.787 kb on - strand, within uidBat 1691.793 kb on - strand, within uidBat 1691.867 kb on - strand, within uidBat 1691.898 kb on + strand, within uidBat 1691.898 kb on + strand, within uidBat 1691.963 kb on + strand, within uidBat 1691.963 kb on + strand, within uidBat 1691.976 kb on + strand, within uidBat 1692.031 kb on + strand, within uidBat 1692.031 kb on + strand, within uidBat 1692.089 kb on - strand, within uidBat 1692.195 kb on - strandat 1692.710 kb on - strand, within uidAat 1692.732 kb on + strand, within uidAat 1693.129 kb on + strand, within uidAat 1693.155 kb on - strand, within uidAat 1693.171 kb on - strand, within uidAat 1693.171 kb on - strand, within uidAat 1693.245 kb on - strand, within uidAat 1693.245 kb on - strand, within uidAat 1693.388 kb on - strand, within uidAat 1693.548 kb on - strand, within uidAat 1693.548 kb on - strand, within uidAat 1693.571 kb on - strand, within uidAat 1693.571 kb on - strand, within uidAat 1693.836 kb on - strand, within uidAat 1693.954 kb on + strandat 1694.042 kb on - strandat 1694.100 kb on - strandat 1694.177 kb on - strandat 1694.267 kb on - strandat 1694.629 kb on + strandat 1694.629 kb on + strand, within uidRat 1694.746 kb on - strand, within uidRat 1694.873 kb on + strand, within uidRat 1694.873 kb on + strand, within uidRat 1694.938 kb on + strand, within uidRat 1695.083 kb on + strandat 1695.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecanol (C)
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1,691,458 + uidB b1616 0.40 -0.6
1,691,458 + uidB b1616 0.40 +0.6
1,691,486 + uidB b1616 0.42 -0.2
1,691,489 - uidB b1616 0.42 -0.4
1,691,489 - uidB b1616 0.42 +0.1
1,691,699 - uidB b1616 0.57 +0.5
1,691,699 - uidB b1616 0.57 -0.5
1,691,787 - uidB b1616 0.64 -3.3
1,691,793 - uidB b1616 0.64 +1.1
1,691,867 - uidB b1616 0.69 -0.3
1,691,898 + uidB b1616 0.72 -1.1
1,691,898 + uidB b1616 0.72 +0.8
1,691,963 + uidB b1616 0.76 +1.2
1,691,963 + uidB b1616 0.76 -1.1
1,691,976 + uidB b1616 0.77 -0.1
1,692,031 + uidB b1616 0.81 +1.8
1,692,031 + uidB b1616 0.81 -0.2
1,692,089 - uidB b1616 0.86 -0.6
1,692,195 - -1.3
1,692,710 - uidA b1617 0.24 -0.9
1,692,732 + uidA b1617 0.25 -0.3
1,693,129 + uidA b1617 0.47 -1.6
1,693,155 - uidA b1617 0.48 +0.5
1,693,171 - uidA b1617 0.49 -0.8
1,693,171 - uidA b1617 0.49 +0.2
1,693,245 - uidA b1617 0.53 +1.3
1,693,245 - uidA b1617 0.53 -2.2
1,693,388 - uidA b1617 0.61 -0.9
1,693,548 - uidA b1617 0.70 -0.2
1,693,548 - uidA b1617 0.70 +0.0
1,693,571 - uidA b1617 0.71 -0.7
1,693,571 - uidA b1617 0.71 -2.0
1,693,836 - uidA b1617 0.86 -0.7
1,693,954 + +0.7
1,694,042 - +0.1
1,694,100 - +0.4
1,694,177 - +0.7
1,694,267 - +0.4
1,694,629 + -0.5
1,694,629 + uidR b1618 0.24 +0.3
1,694,746 - uidR b1618 0.44 +0.6
1,694,873 + uidR b1618 0.65 +1.4
1,694,873 + uidR b1618 0.65 +0.0
1,694,938 + uidR b1618 0.76 +0.5
1,695,083 + +0.3
1,695,089 - +0.5

Or see this region's nucleotide sequence