Experiment: Dodecane and Rhamnolipid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhJ and ybhC are separated by 233 nucleotides ybhC and ybhB are separated by 151 nucleotides ybhB and bioA are separated by 58 nucleotides
b0771: ybhJ - putative enzyme (VIMSS), at 802,726 to 804,987
ybhJ
b0772: ybhC - predicted pectinesterase (NCBI), at 805,221 to 806,504
ybhC
b0773: ybhB - predicted kinase inhibitor (NCBI), at 806,656 to 807,132
ybhB
b0774: bioA - adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI), at 807,191 to 808,480
bioA
Position (kb) 805
806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 804.305 kb on + strand, within ybhJ at 804.305 kb on + strand, within ybhJ at 804.584 kb on + strand, within ybhJ at 804.584 kb on + strand, within ybhJ at 804.618 kb on + strand, within ybhJ at 804.618 kb on + strand, within ybhJ at 804.626 kb on - strand, within ybhJ at 804.739 kb on - strand, within ybhJ at 804.793 kb on - strand at 804.793 kb on - strand at 804.861 kb on - strand at 804.911 kb on - strand at 804.911 kb on - strand at 804.928 kb on - strand at 805.001 kb on + strand at 805.026 kb on + strand at 805.271 kb on - strand at 805.319 kb on - strand at 805.334 kb on - strand at 805.441 kb on - strand, within ybhC at 805.585 kb on + strand, within ybhC at 805.674 kb on - strand, within ybhC at 805.683 kb on - strand, within ybhC at 805.726 kb on - strand, within ybhC at 805.736 kb on - strand, within ybhC at 805.757 kb on - strand, within ybhC at 805.757 kb on - strand, within ybhC at 805.759 kb on - strand, within ybhC at 805.774 kb on + strand, within ybhC at 805.774 kb on + strand, within ybhC at 805.782 kb on - strand, within ybhC at 805.782 kb on - strand, within ybhC at 805.801 kb on + strand, within ybhC at 805.920 kb on - strand, within ybhC at 805.935 kb on - strand, within ybhC at 805.956 kb on + strand, within ybhC at 805.956 kb on + strand, within ybhC at 806.091 kb on + strand, within ybhC at 806.094 kb on - strand, within ybhC at 806.096 kb on + strand, within ybhC at 806.096 kb on + strand, within ybhC at 806.104 kb on - strand, within ybhC at 806.104 kb on - strand, within ybhC at 806.104 kb on - strand, within ybhC at 806.129 kb on - strand, within ybhC at 806.184 kb on + strand, within ybhC at 806.233 kb on - strand, within ybhC at 806.233 kb on - strand, within ybhC at 806.288 kb on + strand, within ybhC at 806.386 kb on - strand at 806.421 kb on - strand at 806.421 kb on - strand at 806.444 kb on - strand at 806.559 kb on + strand at 806.559 kb on + strand at 806.611 kb on + strand at 806.710 kb on + strand, within ybhB at 806.746 kb on + strand, within ybhB at 806.754 kb on + strand, within ybhB at 806.754 kb on + strand, within ybhB at 806.879 kb on + strand, within ybhB at 806.879 kb on + strand, within ybhB at 806.886 kb on - strand, within ybhB at 806.983 kb on - strand, within ybhB at 807.068 kb on + strand, within ybhB at 807.146 kb on - strand at 807.233 kb on - strand at 807.256 kb on - strand at 807.278 kb on - strand at 807.278 kb on - strand at 807.311 kb on + strand at 807.454 kb on + strand, within bioA
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecane and Rhamnolipid (C) remove 804,305 + ybhJ b0771 0.70 +0.4 804,305 + ybhJ b0771 0.70 -2.4 804,584 + ybhJ b0771 0.82 +2.1 804,584 + ybhJ b0771 0.82 +0.0 804,618 + ybhJ b0771 0.84 +0.9 804,618 + ybhJ b0771 0.84 +0.7 804,626 - ybhJ b0771 0.84 -1.6 804,739 - ybhJ b0771 0.89 +0.1 804,793 - +0.5 804,793 - +0.5 804,861 - +0.4 804,911 - +0.2 804,911 - +0.1 804,928 - +0.6 805,001 + +0.4 805,026 + +0.8 805,271 - -1.1 805,319 - +1.0 805,334 - -0.3 805,441 - ybhC b0772 0.17 +0.0 805,585 + ybhC b0772 0.28 +0.9 805,674 - ybhC b0772 0.35 +2.2 805,683 - ybhC b0772 0.36 -2.1 805,726 - ybhC b0772 0.39 +0.5 805,736 - ybhC b0772 0.40 +0.6 805,757 - ybhC b0772 0.42 -2.3 805,757 - ybhC b0772 0.42 -0.2 805,759 - ybhC b0772 0.42 +0.5 805,774 + ybhC b0772 0.43 +0.3 805,774 + ybhC b0772 0.43 +0.9 805,782 - ybhC b0772 0.44 +2.3 805,782 - ybhC b0772 0.44 +0.8 805,801 + ybhC b0772 0.45 +0.4 805,920 - ybhC b0772 0.54 +0.4 805,935 - ybhC b0772 0.56 +2.4 805,956 + ybhC b0772 0.57 -0.7 805,956 + ybhC b0772 0.57 -0.3 806,091 + ybhC b0772 0.68 +0.4 806,094 - ybhC b0772 0.68 +0.5 806,096 + ybhC b0772 0.68 -2.8 806,096 + ybhC b0772 0.68 -0.1 806,104 - ybhC b0772 0.69 -1.5 806,104 - ybhC b0772 0.69 +0.1 806,104 - ybhC b0772 0.69 +0.7 806,129 - ybhC b0772 0.71 +0.6 806,184 + ybhC b0772 0.75 -0.1 806,233 - ybhC b0772 0.79 +0.5 806,233 - ybhC b0772 0.79 +1.9 806,288 + ybhC b0772 0.83 -0.3 806,386 - -0.5 806,421 - +0.2 806,421 - +0.4 806,444 - +0.6 806,559 + +0.2 806,559 + +0.5 806,611 + -0.2 806,710 + ybhB b0773 0.11 -0.5 806,746 + ybhB b0773 0.19 -0.0 806,754 + ybhB b0773 0.21 +0.3 806,754 + ybhB b0773 0.21 +0.6 806,879 + ybhB b0773 0.47 -0.1 806,879 + ybhB b0773 0.47 +0.2 806,886 - ybhB b0773 0.48 +0.3 806,983 - ybhB b0773 0.69 +0.1 807,068 + ybhB b0773 0.86 +0.5 807,146 - -0.9 807,233 - +0.7 807,256 - -1.3 807,278 - -0.8 807,278 - +0.4 807,311 + +0.7 807,454 + bioA b0774 0.20 +0.0
Or see this region's nucleotide sequence