Strain Fitness in Escherichia coli BW25113 around b0109

Experiment: Dodecane and Rhamnolipid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dodecane and Rhamnolipid (C)
116,760	-	hofB	b0107	0.75	-0.3
116,777	+	hofB	b0107	0.77	+0.7
116,777	+	hofB	b0107	0.77	-3.0
116,872	+	hofB	b0107	0.84	-0.2
116,882	+	hofB	b0107	0.84	-0.8
116,957	-	hofB	b0107	0.90	-0.8
116,964	-				-0.7
117,046	+				+0.9
117,056	+				-0.0
117,069	+				-0.0
117,075	+				-0.1
117,075	+				-1.0
117,075	+				-1.0
117,081	-				+0.5
117,081	-				+0.5
117,084	+				+0.4
117,087	+				-0.8
117,227	-	ppdD	b0108	0.27	+1.0
117,281	+	ppdD	b0108	0.39	-2.7
117,281	+	ppdD	b0108	0.39	+0.2
117,293	-	ppdD	b0108	0.42	+0.2
117,302	+	ppdD	b0108	0.44	+1.3
117,302	+	ppdD	b0108	0.44	+1.9
117,385	+	ppdD	b0108	0.63	-0.6
117,387	+	ppdD	b0108	0.63	-2.6
117,508	-				-0.7
117,508	-				+0.2
117,511	-				+0.6
117,511	-				-1.3
117,525	-				+0.9
117,525	-				+3.2
117,603	+				+1.8
117,603	+				-1.0
117,839	+				+1.2
117,856	-	nadC	b0109	0.12	+0.8
117,856	-	nadC	b0109	0.12	+0.1
117,879	-	nadC	b0109	0.14	+0.1
117,879	-	nadC	b0109	0.14	+0.4
117,881	-	nadC	b0109	0.14	-0.7
117,922	-	nadC	b0109	0.19	+0.1
117,922	-	nadC	b0109	0.19	+0.4
118,107	-	nadC	b0109	0.40	-0.4
118,201	+	nadC	b0109	0.50	-0.1
118,230	+	nadC	b0109	0.53	+0.7
118,230	+	nadC	b0109	0.53	-0.1
118,296	+	nadC	b0109	0.61	-0.7
118,355	-	nadC	b0109	0.67	+1.5
118,355	-	nadC	b0109	0.67	-0.7
118,364	+	nadC	b0109	0.68	+0.5
118,382	-	nadC	b0109	0.70	-0.8
118,538	+	nadC	b0109	0.88	-0.2
118,623	+				-0.6
118,631	-				+0.6
118,737	+				-1.0
118,737	+				+0.8
118,781	+				+0.5
118,836	+	ampD	b0110	0.19	+0.6
118,868	+	ampD	b0110	0.24	-0.3
118,868	+	ampD	b0110	0.24	+0.8
118,904	-	ampD	b0110	0.31	-0.7
119,033	-	ampD	b0110	0.54	+0.6
119,101	+	ampD	b0110	0.67	-0.2
119,109	-	ampD	b0110	0.68	-0.7
119,109	-	ampD	b0110	0.68	+0.9
119,117	-	ampD	b0110	0.70	+0.4
119,119	+	ampD	b0110	0.70	+0.9
119,150	-	ampD	b0110	0.76	+0.1
119,150	-	ampD	b0110	0.76	+0.4
119,163	+	ampD	b0110	0.78	+0.6
119,168	-	ampD	b0110	0.79	-0.8
119,191	+	ampD	b0110	0.83	+0.1
119,191	+	ampD	b0110	0.83	+1.3
119,274	+				+0.8
119,339	+				-0.0
119,339	+				-0.1
119,499	-	ampE	b0111	0.25	+0.3
119,499	-	ampE	b0111	0.25	-1.1
119,522	+	ampE	b0111	0.28	-1.8
119,528	-	ampE	b0111	0.29	+0.8
119,555	-	ampE	b0111	0.32	+0.0
119,555	-	ampE	b0111	0.32	+1.1
119,558	-	ampE	b0111	0.32	-0.1
119,567	+	ampE	b0111	0.33	-1.6
119,567	+	ampE	b0111	0.33	-0.2