Experiment: KB with Gossypetin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5028 and Psyr_5029 are separated by 63 nucleotides Psyr_5029 and Psyr_5030 are separated by 189 nucleotides Psyr_5030 and Psyr_5031 overlap by 1 nucleotides Psyr_5031 and Psyr_5032 are separated by 167 nucleotides Psyr_5032 and Psyr_5033 are separated by 60 nucleotides
Psyr_5028: Psyr_5028 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 5,967,835 to 5,968,983
_5028
Psyr_5029: Psyr_5029 - Rubredoxin-type Fe(Cys)4 protein, at 5,969,047 to 5,969,214
_5029
Psyr_5030: Psyr_5030 - chorismate lyase, at 5,969,404 to 5,969,964
_5030
Psyr_5031: Psyr_5031 - 4-hydroxybenzoate octaprenyltransferase, at 5,969,964 to 5,970,854
_5031
Psyr_5032: Psyr_5032 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 5,971,022 to 5,971,711
_5032
Psyr_5033: Psyr_5033 - PAS/PAC sensor signal transduction histidine kinase, at 5,971,772 to 5,973,094
_5033
Position (kb) 5969
5970
5971 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5969.177 kb on + strand, within Psyr_5029 at 5969.177 kb on + strand, within Psyr_5029 at 5969.177 kb on + strand, within Psyr_5029 at 5969.178 kb on - strand, within Psyr_5029 at 5969.178 kb on - strand, within Psyr_5029 at 5969.178 kb on - strand, within Psyr_5029 at 5969.178 kb on - strand, within Psyr_5029 at 5969.178 kb on - strand, within Psyr_5029 at 5969.248 kb on + strand at 5969.248 kb on + strand at 5969.249 kb on - strand at 5969.249 kb on - strand at 5969.284 kb on + strand at 5969.284 kb on + strand at 5969.284 kb on + strand at 5969.284 kb on + strand at 5969.285 kb on - strand at 5969.285 kb on - strand at 5969.285 kb on - strand at 5969.318 kb on + strand at 5969.318 kb on + strand at 5969.318 kb on + strand at 5969.318 kb on + strand at 5969.319 kb on - strand at 5969.319 kb on - strand at 5969.321 kb on - strand at 5969.365 kb on + strand at 5969.650 kb on + strand, within Psyr_5030 at 5969.650 kb on + strand, within Psyr_5030 at 5969.650 kb on + strand, within Psyr_5030 at 5969.650 kb on + strand, within Psyr_5030 at 5969.650 kb on + strand, within Psyr_5030 at 5969.650 kb on + strand, within Psyr_5030 at 5969.650 kb on + strand, within Psyr_5030 at 5969.651 kb on - strand, within Psyr_5030 at 5969.651 kb on - strand, within Psyr_5030 at 5969.967 kb on + strand at 5969.967 kb on + strand at 5969.967 kb on + strand at 5970.884 kb on + strand at 5970.884 kb on + strand at 5970.884 kb on + strand at 5970.885 kb on - strand at 5970.885 kb on - strand at 5970.889 kb on - strand at 5970.938 kb on - strand at 5970.982 kb on + strand at 5970.982 kb on + strand at 5970.982 kb on + strand at 5970.982 kb on + strand at 5970.983 kb on - strand at 5970.983 kb on - strand at 5970.983 kb on - strand at 5970.983 kb on - strand at 5971.001 kb on + strand at 5971.001 kb on + strand at 5971.001 kb on + strand at 5971.001 kb on + strand at 5971.002 kb on - strand at 5971.002 kb on - strand at 5971.002 kb on - strand at 5971.002 kb on - strand at 5971.111 kb on + strand, within Psyr_5032 at 5971.111 kb on + strand, within Psyr_5032 at 5971.112 kb on - strand, within Psyr_5032 at 5971.112 kb on - strand, within Psyr_5032 at 5971.112 kb on - strand, within Psyr_5032 at 5971.328 kb on + strand, within Psyr_5032 at 5971.328 kb on + strand, within Psyr_5032 at 5971.328 kb on + strand, within Psyr_5032 at 5971.328 kb on + strand, within Psyr_5032 at 5971.328 kb on + strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.329 kb on - strand, within Psyr_5032 at 5971.544 kb on + strand, within Psyr_5032 at 5971.545 kb on - strand, within Psyr_5032 at 5971.589 kb on + strand, within Psyr_5032 at 5971.590 kb on - strand, within Psyr_5032 at 5971.590 kb on - strand, within Psyr_5032 at 5971.652 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Gossypetin 10 mM remove 5,969,177 + Psyr_5029 0.77 -0.3 5,969,177 + Psyr_5029 0.77 -1.2 5,969,177 + Psyr_5029 0.77 -0.8 5,969,178 - Psyr_5029 0.78 +3.6 5,969,178 - Psyr_5029 0.78 -0.4 5,969,178 - Psyr_5029 0.78 +1.7 5,969,178 - Psyr_5029 0.78 +0.7 5,969,178 - Psyr_5029 0.78 +0.1 5,969,248 + +2.0 5,969,248 + +0.4 5,969,249 - -0.7 5,969,249 - +0.2 5,969,284 + -0.2 5,969,284 + -0.5 5,969,284 + +0.1 5,969,284 + -0.3 5,969,285 - -0.1 5,969,285 - -0.4 5,969,285 - -0.5 5,969,318 + +0.1 5,969,318 + -1.0 5,969,318 + +0.4 5,969,318 + +1.4 5,969,319 - -0.2 5,969,319 - -1.7 5,969,321 - -0.4 5,969,365 + -0.9 5,969,650 + Psyr_5030 0.44 -0.6 5,969,650 + Psyr_5030 0.44 +0.3 5,969,650 + Psyr_5030 0.44 -1.8 5,969,650 + Psyr_5030 0.44 -1.6 5,969,650 + Psyr_5030 0.44 -0.5 5,969,650 + Psyr_5030 0.44 +0.7 5,969,650 + Psyr_5030 0.44 +0.9 5,969,651 - Psyr_5030 0.44 -1.0 5,969,651 - Psyr_5030 0.44 -1.8 5,969,967 + +0.9 5,969,967 + +0.5 5,969,967 + -0.4 5,970,884 + -0.3 5,970,884 + -1.0 5,970,884 + +0.6 5,970,885 - -0.1 5,970,885 - -0.4 5,970,889 - -0.6 5,970,938 - +0.3 5,970,982 + -0.8 5,970,982 + -2.4 5,970,982 + -0.3 5,970,982 + -0.7 5,970,983 - +2.3 5,970,983 - -1.5 5,970,983 - +0.9 5,970,983 - +1.4 5,971,001 + -0.1 5,971,001 + +0.0 5,971,001 + +2.7 5,971,001 + -1.7 5,971,002 - -1.4 5,971,002 - +0.7 5,971,002 - +2.0 5,971,002 - -0.3 5,971,111 + Psyr_5032 0.13 -0.2 5,971,111 + Psyr_5032 0.13 -1.0 5,971,112 - Psyr_5032 0.13 +0.3 5,971,112 - Psyr_5032 0.13 -0.6 5,971,112 - Psyr_5032 0.13 +2.3 5,971,328 + Psyr_5032 0.44 -0.5 5,971,328 + Psyr_5032 0.44 -0.1 5,971,328 + Psyr_5032 0.44 +1.3 5,971,328 + Psyr_5032 0.44 -0.5 5,971,328 + Psyr_5032 0.44 +3.6 5,971,329 - Psyr_5032 0.44 -0.2 5,971,329 - Psyr_5032 0.44 -0.4 5,971,329 - Psyr_5032 0.44 +2.2 5,971,329 - Psyr_5032 0.44 -1.8 5,971,329 - Psyr_5032 0.44 +0.1 5,971,329 - Psyr_5032 0.44 -2.4 5,971,544 + Psyr_5032 0.76 -0.6 5,971,545 - Psyr_5032 0.76 -0.1 5,971,589 + Psyr_5032 0.82 +0.1 5,971,590 - Psyr_5032 0.82 -0.9 5,971,590 - Psyr_5032 0.82 +1.6 5,971,652 + -1.0
Or see this region's nucleotide sequence