Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4473

Experiment: KB with Gossypetin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4471 and Psyr_4472 are separated by 8 nucleotidesPsyr_4472 and Psyr_4473 are separated by 103 nucleotidesPsyr_4473 and Psyr_4474 are separated by 37 nucleotides Psyr_4471: Psyr_4471 - Protein of unknown function DUF214, at 5,331,356 to 5,332,621 _4471 Psyr_4472: Psyr_4472 - lipoprotein, putative, at 5,332,630 to 5,333,154 _4472 Psyr_4473: Psyr_4473 - OmpW, at 5,333,258 to 5,333,944 _4473 Psyr_4474: Psyr_4474 - hypothetical protein, at 5,333,982 to 5,335,508 _4474 Position (kb) 5333 5334Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5332.372 kb on + strand, within Psyr_4471at 5332.372 kb on + strand, within Psyr_4471at 5332.373 kb on - strand, within Psyr_4471at 5332.373 kb on - strand, within Psyr_4471at 5332.373 kb on - strand, within Psyr_4471at 5332.373 kb on - strand, within Psyr_4471at 5332.374 kb on + strand, within Psyr_4471at 5332.374 kb on + strand, within Psyr_4471at 5332.375 kb on - strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.430 kb on + strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.431 kb on - strand, within Psyr_4471at 5332.458 kb on - strand, within Psyr_4471at 5332.458 kb on - strand, within Psyr_4471at 5332.472 kb on + strand, within Psyr_4471at 5332.472 kb on + strand, within Psyr_4471at 5332.472 kb on + strand, within Psyr_4471at 5332.472 kb on + strand, within Psyr_4471at 5332.481 kb on + strand, within Psyr_4471at 5332.481 kb on + strand, within Psyr_4471at 5332.493 kb on - strand, within Psyr_4471at 5332.508 kb on + strandat 5332.509 kb on - strandat 5332.509 kb on - strandat 5332.580 kb on + strandat 5332.580 kb on + strandat 5332.646 kb on + strandat 5332.647 kb on - strandat 5332.647 kb on - strandat 5332.647 kb on - strandat 5332.647 kb on - strandat 5332.771 kb on - strand, within Psyr_4472at 5332.771 kb on - strand, within Psyr_4472at 5332.771 kb on - strand, within Psyr_4472at 5332.885 kb on + strand, within Psyr_4472at 5332.885 kb on + strand, within Psyr_4472at 5332.886 kb on - strand, within Psyr_4472at 5332.945 kb on + strand, within Psyr_4472at 5332.945 kb on + strand, within Psyr_4472at 5332.945 kb on + strand, within Psyr_4472at 5333.035 kb on + strand, within Psyr_4472at 5333.035 kb on + strand, within Psyr_4472at 5333.134 kb on + strandat 5333.216 kb on + strandat 5333.222 kb on + strandat 5333.223 kb on - strandat 5333.223 kb on - strandat 5333.328 kb on - strand, within Psyr_4473at 5333.474 kb on + strand, within Psyr_4473at 5333.474 kb on + strand, within Psyr_4473at 5333.474 kb on + strand, within Psyr_4473at 5333.475 kb on - strand, within Psyr_4473at 5333.475 kb on - strand, within Psyr_4473at 5333.530 kb on + strand, within Psyr_4473at 5333.531 kb on - strand, within Psyr_4473at 5333.651 kb on + strand, within Psyr_4473at 5333.672 kb on + strand, within Psyr_4473at 5333.672 kb on + strand, within Psyr_4473at 5333.673 kb on - strand, within Psyr_4473at 5333.673 kb on - strand, within Psyr_4473at 5333.673 kb on - strand, within Psyr_4473at 5333.673 kb on - strand, within Psyr_4473at 5333.780 kb on + strand, within Psyr_4473at 5333.780 kb on + strand, within Psyr_4473at 5333.780 kb on + strand, within Psyr_4473at 5333.780 kb on + strand, within Psyr_4473at 5333.780 kb on + strand, within Psyr_4473at 5333.780 kb on + strand, within Psyr_4473at 5333.781 kb on - strand, within Psyr_4473at 5333.781 kb on - strand, within Psyr_4473at 5333.781 kb on - strand, within Psyr_4473at 5333.781 kb on - strand, within Psyr_4473at 5333.799 kb on + strand, within Psyr_4473at 5333.799 kb on + strand, within Psyr_4473at 5333.800 kb on - strand, within Psyr_4473at 5333.800 kb on - strand, within Psyr_4473at 5333.800 kb on - strand, within Psyr_4473at 5333.800 kb on - strand, within Psyr_4473at 5333.822 kb on + strand, within Psyr_4473at 5333.823 kb on - strand, within Psyr_4473at 5333.823 kb on - strand, within Psyr_4473at 5333.823 kb on - strand, within Psyr_4473at 5333.915 kb on + strandat 5333.915 kb on + strandat 5333.915 kb on + strandat 5333.915 kb on + strandat 5333.915 kb on + strandat 5333.916 kb on - strandat 5333.916 kb on - strandat 5333.916 kb on - strandat 5334.041 kb on + strandat 5334.042 kb on - strandat 5334.042 kb on - strandat 5334.042 kb on - strandat 5334.042 kb on - strandat 5334.042 kb on - strandat 5334.085 kb on - strandat 5334.085 kb on - strandat 5334.085 kb on - strandat 5334.301 kb on - strand, within Psyr_4474at 5334.516 kb on + strand, within Psyr_4474

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gossypetin 10 mM
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5,332,372 + Psyr_4471 0.80 +1.0
5,332,372 + Psyr_4471 0.80 +0.3
5,332,373 - Psyr_4471 0.80 -1.0
5,332,373 - Psyr_4471 0.80 +0.5
5,332,373 - Psyr_4471 0.80 -0.7
5,332,373 - Psyr_4471 0.80 +1.2
5,332,374 + Psyr_4471 0.80 -0.4
5,332,374 + Psyr_4471 0.80 -0.8
5,332,375 - Psyr_4471 0.80 -0.7
5,332,430 + Psyr_4471 0.85 -0.8
5,332,430 + Psyr_4471 0.85 -1.4
5,332,430 + Psyr_4471 0.85 -0.1
5,332,430 + Psyr_4471 0.85 +1.6
5,332,430 + Psyr_4471 0.85 +0.6
5,332,430 + Psyr_4471 0.85 +0.4
5,332,430 + Psyr_4471 0.85 -0.1
5,332,431 - Psyr_4471 0.85 +0.6
5,332,431 - Psyr_4471 0.85 +1.7
5,332,431 - Psyr_4471 0.85 -0.3
5,332,431 - Psyr_4471 0.85 +1.9
5,332,431 - Psyr_4471 0.85 +0.3
5,332,431 - Psyr_4471 0.85 +0.1
5,332,431 - Psyr_4471 0.85 +0.4
5,332,458 - Psyr_4471 0.87 +0.4
5,332,458 - Psyr_4471 0.87 -2.6
5,332,472 + Psyr_4471 0.88 -1.4
5,332,472 + Psyr_4471 0.88 -0.6
5,332,472 + Psyr_4471 0.88 -0.9
5,332,472 + Psyr_4471 0.88 +0.5
5,332,481 + Psyr_4471 0.89 +0.3
5,332,481 + Psyr_4471 0.89 -0.9
5,332,493 - Psyr_4471 0.90 +1.1
5,332,508 + +0.2
5,332,509 - +0.5
5,332,509 - -0.6
5,332,580 + -0.9
5,332,580 + -0.6
5,332,646 + -1.0
5,332,647 - -2.1
5,332,647 - +1.2
5,332,647 - +0.1
5,332,647 - +0.6
5,332,771 - Psyr_4472 0.27 -1.3
5,332,771 - Psyr_4472 0.27 +0.7
5,332,771 - Psyr_4472 0.27 -1.5
5,332,885 + Psyr_4472 0.49 +0.2
5,332,885 + Psyr_4472 0.49 -1.9
5,332,886 - Psyr_4472 0.49 +0.6
5,332,945 + Psyr_4472 0.60 -0.8
5,332,945 + Psyr_4472 0.60 +0.1
5,332,945 + Psyr_4472 0.60 -0.3
5,333,035 + Psyr_4472 0.77 -0.8
5,333,035 + Psyr_4472 0.77 -0.4
5,333,134 + +1.7
5,333,216 + +0.8
5,333,222 + -3.3
5,333,223 - +0.1
5,333,223 - -1.9
5,333,328 - Psyr_4473 0.10 -1.6
5,333,474 + Psyr_4473 0.31 +0.2
5,333,474 + Psyr_4473 0.31 -0.2
5,333,474 + Psyr_4473 0.31 -0.2
5,333,475 - Psyr_4473 0.32 -0.7
5,333,475 - Psyr_4473 0.32 -0.6
5,333,530 + Psyr_4473 0.40 +2.8
5,333,531 - Psyr_4473 0.40 -0.7
5,333,651 + Psyr_4473 0.57 -0.4
5,333,672 + Psyr_4473 0.60 -0.2
5,333,672 + Psyr_4473 0.60 +0.3
5,333,673 - Psyr_4473 0.60 +1.5
5,333,673 - Psyr_4473 0.60 +0.1
5,333,673 - Psyr_4473 0.60 +0.5
5,333,673 - Psyr_4473 0.60 -1.2
5,333,780 + Psyr_4473 0.76 -0.2
5,333,780 + Psyr_4473 0.76 -1.6
5,333,780 + Psyr_4473 0.76 +0.9
5,333,780 + Psyr_4473 0.76 -0.3
5,333,780 + Psyr_4473 0.76 +1.6
5,333,780 + Psyr_4473 0.76 +0.6
5,333,781 - Psyr_4473 0.76 +0.8
5,333,781 - Psyr_4473 0.76 -0.5
5,333,781 - Psyr_4473 0.76 -0.4
5,333,781 - Psyr_4473 0.76 +0.3
5,333,799 + Psyr_4473 0.79 -1.5
5,333,799 + Psyr_4473 0.79 +0.6
5,333,800 - Psyr_4473 0.79 +0.1
5,333,800 - Psyr_4473 0.79 -1.4
5,333,800 - Psyr_4473 0.79 -0.4
5,333,800 - Psyr_4473 0.79 -1.3
5,333,822 + Psyr_4473 0.82 -0.9
5,333,823 - Psyr_4473 0.82 +1.3
5,333,823 - Psyr_4473 0.82 -0.4
5,333,823 - Psyr_4473 0.82 +0.1
5,333,915 + +0.6
5,333,915 + +0.6
5,333,915 + +0.0
5,333,915 + +0.0
5,333,915 + -0.2
5,333,916 - -1.4
5,333,916 - +3.2
5,333,916 - -1.9
5,334,041 + +0.8
5,334,042 - -0.5
5,334,042 - -0.4
5,334,042 - +0.5
5,334,042 - -0.9
5,334,042 - +0.5
5,334,085 - -0.8
5,334,085 - +0.2
5,334,085 - +1.7
5,334,301 - Psyr_4474 0.21 +0.3
5,334,516 + Psyr_4474 0.35 -0.0

Or see this region's nucleotide sequence