Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3657

Experiment: KB with Gossypetin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3656 and Psyr_3657 overlap by 8 nucleotidesPsyr_3657 and Psyr_3658 are separated by 3 nucleotides Psyr_3656: Psyr_3656 - ABC transporter, transmembrane region:ABC transporter, at 4,342,921 to 4,344,747 _3656 Psyr_3657: Psyr_3657 - DSBA oxidoreductase, at 4,344,740 to 4,345,372 _3657 Psyr_3658: Psyr_3658 - Rhodanese-like protein, at 4,345,376 to 4,346,329 _3658 Position (kb) 4344 4345 4346Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4343.744 kb on + strand, within Psyr_3656at 4343.751 kb on - strand, within Psyr_3656at 4343.799 kb on - strand, within Psyr_3656at 4343.799 kb on - strand, within Psyr_3656at 4343.799 kb on - strand, within Psyr_3656at 4343.799 kb on - strand, within Psyr_3656at 4343.972 kb on - strand, within Psyr_3656at 4344.069 kb on + strand, within Psyr_3656at 4344.069 kb on + strand, within Psyr_3656at 4344.069 kb on + strand, within Psyr_3656at 4344.069 kb on + strand, within Psyr_3656at 4344.069 kb on + strand, within Psyr_3656at 4344.070 kb on - strand, within Psyr_3656at 4344.070 kb on - strand, within Psyr_3656at 4344.070 kb on - strand, within Psyr_3656at 4344.070 kb on - strand, within Psyr_3656at 4344.070 kb on - strand, within Psyr_3656at 4344.070 kb on - strand, within Psyr_3656at 4344.321 kb on - strand, within Psyr_3656at 4344.321 kb on - strand, within Psyr_3656at 4344.374 kb on + strand, within Psyr_3656at 4344.479 kb on + strand, within Psyr_3656at 4344.480 kb on - strand, within Psyr_3656at 4344.509 kb on - strand, within Psyr_3656at 4345.020 kb on + strand, within Psyr_3657at 4345.021 kb on - strand, within Psyr_3657at 4345.108 kb on + strand, within Psyr_3657at 4345.201 kb on - strand, within Psyr_3657at 4345.201 kb on - strand, within Psyr_3657at 4345.201 kb on - strand, within Psyr_3657at 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.353 kb on + strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.354 kb on - strandat 4345.398 kb on + strandat 4345.399 kb on - strandat 4345.426 kb on + strandat 4345.427 kb on - strandat 4345.590 kb on + strand, within Psyr_3658at 4345.689 kb on + strand, within Psyr_3658at 4345.689 kb on + strand, within Psyr_3658at 4345.690 kb on - strand, within Psyr_3658at 4345.716 kb on + strand, within Psyr_3658at 4345.717 kb on - strand, within Psyr_3658at 4345.746 kb on + strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.747 kb on - strand, within Psyr_3658at 4345.834 kb on - strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.977 kb on + strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4345.978 kb on - strand, within Psyr_3658at 4346.059 kb on - strand, within Psyr_3658at 4346.283 kb on + strandat 4346.283 kb on + strandat 4346.284 kb on - strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.331 kb on + strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strandat 4346.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gossypetin 10 mM
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4,343,744 + Psyr_3656 0.45 +0.4
4,343,751 - Psyr_3656 0.45 +0.2
4,343,799 - Psyr_3656 0.48 -1.7
4,343,799 - Psyr_3656 0.48 +1.2
4,343,799 - Psyr_3656 0.48 +0.2
4,343,799 - Psyr_3656 0.48 -0.4
4,343,972 - Psyr_3656 0.58 -2.5
4,344,069 + Psyr_3656 0.63 -0.1
4,344,069 + Psyr_3656 0.63 -0.4
4,344,069 + Psyr_3656 0.63 +0.7
4,344,069 + Psyr_3656 0.63 -0.3
4,344,069 + Psyr_3656 0.63 -0.1
4,344,070 - Psyr_3656 0.63 +0.7
4,344,070 - Psyr_3656 0.63 +1.0
4,344,070 - Psyr_3656 0.63 +0.5
4,344,070 - Psyr_3656 0.63 +0.3
4,344,070 - Psyr_3656 0.63 +2.5
4,344,070 - Psyr_3656 0.63 +0.4
4,344,321 - Psyr_3656 0.77 +0.3
4,344,321 - Psyr_3656 0.77 +0.7
4,344,374 + Psyr_3656 0.80 -0.2
4,344,479 + Psyr_3656 0.85 -0.4
4,344,480 - Psyr_3656 0.85 -0.2
4,344,509 - Psyr_3656 0.87 -0.4
4,345,020 + Psyr_3657 0.44 +1.3
4,345,021 - Psyr_3657 0.44 +1.4
4,345,108 + Psyr_3657 0.58 +2.3
4,345,201 - Psyr_3657 0.73 +1.3
4,345,201 - Psyr_3657 0.73 +0.3
4,345,201 - Psyr_3657 0.73 +1.6
4,345,353 + +0.3
4,345,353 + -0.5
4,345,353 + -0.5
4,345,353 + +0.1
4,345,353 + -0.1
4,345,353 + +0.5
4,345,354 - -2.4
4,345,354 - +0.3
4,345,354 - +2.2
4,345,354 - +0.0
4,345,354 - -0.8
4,345,354 - -1.5
4,345,354 - +0.8
4,345,354 - -0.8
4,345,354 - -0.1
4,345,354 - +1.8
4,345,398 + -2.4
4,345,399 - +1.4
4,345,426 + -0.3
4,345,427 - -1.1
4,345,590 + Psyr_3658 0.22 +0.4
4,345,689 + Psyr_3658 0.33 -1.3
4,345,689 + Psyr_3658 0.33 -2.2
4,345,690 - Psyr_3658 0.33 +0.2
4,345,716 + Psyr_3658 0.36 -1.3
4,345,717 - Psyr_3658 0.36 +0.2
4,345,746 + Psyr_3658 0.39 -0.9
4,345,747 - Psyr_3658 0.39 +0.3
4,345,747 - Psyr_3658 0.39 +0.7
4,345,747 - Psyr_3658 0.39 -0.6
4,345,747 - Psyr_3658 0.39 +0.7
4,345,747 - Psyr_3658 0.39 -0.8
4,345,747 - Psyr_3658 0.39 -0.6
4,345,747 - Psyr_3658 0.39 -0.6
4,345,747 - Psyr_3658 0.39 +1.7
4,345,834 - Psyr_3658 0.48 +0.5
4,345,977 + Psyr_3658 0.63 -1.2
4,345,977 + Psyr_3658 0.63 +0.2
4,345,977 + Psyr_3658 0.63 -1.8
4,345,977 + Psyr_3658 0.63 +0.7
4,345,978 - Psyr_3658 0.63 +0.5
4,345,978 - Psyr_3658 0.63 -0.7
4,345,978 - Psyr_3658 0.63 +1.9
4,345,978 - Psyr_3658 0.63 -1.7
4,345,978 - Psyr_3658 0.63 -1.7
4,346,059 - Psyr_3658 0.72 -0.3
4,346,283 + -0.2
4,346,283 + -0.8
4,346,284 - +0.2
4,346,331 + -1.0
4,346,331 + +0.9
4,346,331 + +1.0
4,346,331 + -0.3
4,346,331 + +2.2
4,346,331 + -0.2
4,346,331 + -0.3
4,346,331 + +0.4
4,346,331 + +1.6
4,346,331 + -0.7
4,346,331 + +1.2
4,346,331 + +1.2
4,346,331 + +0.9
4,346,331 + +0.2
4,346,332 - +2.0
4,346,332 - +0.2
4,346,332 - -0.2
4,346,332 - -0.3
4,346,332 - -2.0
4,346,332 - +1.4
4,346,332 - -0.5
4,346,332 - -0.6
4,346,332 - +3.3

Or see this region's nucleotide sequence