Experiment: KB with Gossypetin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3540 and Psyr_3541 are separated by 64 nucleotides Psyr_3541 and Psyr_3542 are separated by 80 nucleotides
Psyr_3540: Psyr_3540 - Zinc-containing alcohol dehydrogenase superfamily, at 4,217,886 to 4,218,887
_3540
Psyr_3541: Psyr_3541 - Short-chain dehydrogenase/reductase SDR, at 4,218,952 to 4,219,764
_3541
Psyr_3542: Psyr_3542 - Short-chain dehydrogenase/reductase SDR, at 4,219,845 to 4,220,594
_3542
Position (kb) 4218
4219
4220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4218.027 kb on - strand, within Psyr_3540 at 4218.061 kb on + strand, within Psyr_3540 at 4218.276 kb on - strand, within Psyr_3540 at 4218.276 kb on - strand, within Psyr_3540 at 4218.276 kb on - strand, within Psyr_3540 at 4218.583 kb on + strand, within Psyr_3540 at 4218.584 kb on - strand, within Psyr_3540 at 4218.653 kb on - strand, within Psyr_3540 at 4218.782 kb on - strand, within Psyr_3540 at 4218.885 kb on + strand at 4218.885 kb on + strand at 4218.885 kb on + strand at 4218.886 kb on - strand at 4218.894 kb on - strand at 4218.897 kb on - strand at 4219.043 kb on - strand, within Psyr_3541 at 4219.384 kb on + strand, within Psyr_3541 at 4219.384 kb on + strand, within Psyr_3541 at 4219.414 kb on + strand, within Psyr_3541 at 4219.415 kb on - strand, within Psyr_3541 at 4219.484 kb on + strand, within Psyr_3541 at 4219.484 kb on + strand, within Psyr_3541 at 4219.484 kb on + strand, within Psyr_3541 at 4219.484 kb on + strand, within Psyr_3541 at 4219.485 kb on - strand, within Psyr_3541 at 4219.485 kb on - strand, within Psyr_3541 at 4219.485 kb on - strand, within Psyr_3541 at 4219.485 kb on - strand, within Psyr_3541 at 4219.538 kb on - strand, within Psyr_3541 at 4219.697 kb on + strand at 4219.762 kb on + strand at 4219.762 kb on + strand at 4219.762 kb on + strand at 4219.763 kb on - strand at 4219.789 kb on + strand at 4219.790 kb on - strand at 4219.944 kb on - strand, within Psyr_3542 at 4219.998 kb on + strand, within Psyr_3542 at 4219.998 kb on + strand, within Psyr_3542 at 4219.998 kb on + strand, within Psyr_3542 at 4219.999 kb on - strand, within Psyr_3542 at 4219.999 kb on - strand, within Psyr_3542 at 4220.112 kb on - strand, within Psyr_3542 at 4220.183 kb on + strand, within Psyr_3542 at 4220.184 kb on - strand, within Psyr_3542 at 4220.184 kb on - strand, within Psyr_3542 at 4220.353 kb on + strand, within Psyr_3542 at 4220.383 kb on - strand, within Psyr_3542 at 4220.488 kb on + strand, within Psyr_3542 at 4220.489 kb on - strand, within Psyr_3542 at 4220.544 kb on + strand at 4220.544 kb on + strand at 4220.544 kb on + strand at 4220.544 kb on + strand at 4220.545 kb on - strand at 4220.545 kb on - strand at 4220.545 kb on - strand at 4220.545 kb on - strand at 4220.574 kb on + strand at 4220.621 kb on + strand at 4220.622 kb on - strand at 4220.622 kb on - strand at 4220.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Gossypetin 10 mM remove 4,218,027 - Psyr_3540 0.14 +0.3 4,218,061 + Psyr_3540 0.17 +1.8 4,218,276 - Psyr_3540 0.39 -1.9 4,218,276 - Psyr_3540 0.39 +1.2 4,218,276 - Psyr_3540 0.39 +0.2 4,218,583 + Psyr_3540 0.70 -0.9 4,218,584 - Psyr_3540 0.70 -1.1 4,218,653 - Psyr_3540 0.77 +1.6 4,218,782 - Psyr_3540 0.89 -0.1 4,218,885 + -0.3 4,218,885 + +2.9 4,218,885 + +0.3 4,218,886 - -0.5 4,218,894 - -0.3 4,218,897 - +0.5 4,219,043 - Psyr_3541 0.11 +1.4 4,219,384 + Psyr_3541 0.53 +0.3 4,219,384 + Psyr_3541 0.53 -0.4 4,219,414 + Psyr_3541 0.57 +1.1 4,219,415 - Psyr_3541 0.57 +0.5 4,219,484 + Psyr_3541 0.65 -0.5 4,219,484 + Psyr_3541 0.65 -1.2 4,219,484 + Psyr_3541 0.65 +0.4 4,219,484 + Psyr_3541 0.65 -0.3 4,219,485 - Psyr_3541 0.66 +3.7 4,219,485 - Psyr_3541 0.66 +0.8 4,219,485 - Psyr_3541 0.66 -0.6 4,219,485 - Psyr_3541 0.66 +1.8 4,219,538 - Psyr_3541 0.72 -0.1 4,219,697 + +0.3 4,219,762 + +0.1 4,219,762 + -0.2 4,219,762 + -1.7 4,219,763 - +0.9 4,219,789 + +0.6 4,219,790 - +0.4 4,219,944 - Psyr_3542 0.13 +1.1 4,219,998 + Psyr_3542 0.20 -1.9 4,219,998 + Psyr_3542 0.20 -3.3 4,219,998 + Psyr_3542 0.20 -2.9 4,219,999 - Psyr_3542 0.21 +0.8 4,219,999 - Psyr_3542 0.21 -2.1 4,220,112 - Psyr_3542 0.36 -0.6 4,220,183 + Psyr_3542 0.45 +0.1 4,220,184 - Psyr_3542 0.45 +0.7 4,220,184 - Psyr_3542 0.45 -0.0 4,220,353 + Psyr_3542 0.68 -0.7 4,220,383 - Psyr_3542 0.72 +0.0 4,220,488 + Psyr_3542 0.86 +1.1 4,220,489 - Psyr_3542 0.86 +2.3 4,220,544 + -1.3 4,220,544 + +0.3 4,220,544 + +0.2 4,220,544 + -1.6 4,220,545 - +0.1 4,220,545 - +0.3 4,220,545 - +0.0 4,220,545 - +1.5 4,220,574 + -3.1 4,220,621 + +1.9 4,220,622 - +1.3 4,220,622 - -2.8 4,220,622 - +0.5
Or see this region's nucleotide sequence