Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4991

Experiment: KB with Solanesol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4990 and Psyr_4991 are separated by 7 nucleotidesPsyr_4991 and Psyr_4992 are separated by 439 nucleotides Psyr_4990: Psyr_4990 - YD repeat protein, at 5,918,400 to 5,921,003 _4990 Psyr_4991: Psyr_4991 - hypothetical protein, at 5,921,011 to 5,921,331 _4991 Psyr_4992: Psyr_4992 - YD repeat protein, at 5,921,771 to 5,923,126 _4992 Position (kb) 5921 5922Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5920.019 kb on - strand, within Psyr_4990at 5920.039 kb on - strand, within Psyr_4990at 5920.039 kb on - strand, within Psyr_4990at 5920.039 kb on - strand, within Psyr_4990at 5920.097 kb on + strand, within Psyr_4990at 5920.097 kb on + strand, within Psyr_4990at 5920.097 kb on + strand, within Psyr_4990at 5920.097 kb on + strand, within Psyr_4990at 5920.107 kb on + strand, within Psyr_4990at 5920.108 kb on - strand, within Psyr_4990at 5920.108 kb on - strand, within Psyr_4990at 5920.113 kb on + strand, within Psyr_4990at 5920.237 kb on - strand, within Psyr_4990at 5920.237 kb on - strand, within Psyr_4990at 5920.237 kb on - strand, within Psyr_4990at 5920.237 kb on - strand, within Psyr_4990at 5920.239 kb on - strand, within Psyr_4990at 5920.239 kb on - strand, within Psyr_4990at 5920.239 kb on - strand, within Psyr_4990at 5920.239 kb on - strand, within Psyr_4990at 5920.243 kb on - strand, within Psyr_4990at 5920.311 kb on + strand, within Psyr_4990at 5920.312 kb on - strand, within Psyr_4990at 5920.315 kb on - strand, within Psyr_4990at 5920.444 kb on + strand, within Psyr_4990at 5920.444 kb on + strand, within Psyr_4990at 5920.444 kb on + strand, within Psyr_4990at 5920.444 kb on + strand, within Psyr_4990at 5920.445 kb on - strand, within Psyr_4990at 5920.445 kb on - strand, within Psyr_4990at 5920.445 kb on - strand, within Psyr_4990at 5920.445 kb on - strand, within Psyr_4990at 5920.445 kb on - strand, within Psyr_4990at 5920.462 kb on - strand, within Psyr_4990at 5920.489 kb on - strand, within Psyr_4990at 5920.489 kb on - strand, within Psyr_4990at 5920.494 kb on - strand, within Psyr_4990at 5920.507 kb on - strand, within Psyr_4990at 5920.507 kb on - strand, within Psyr_4990at 5920.532 kb on + strand, within Psyr_4990at 5920.579 kb on - strand, within Psyr_4990at 5920.587 kb on - strand, within Psyr_4990at 5920.628 kb on - strand, within Psyr_4990at 5920.656 kb on - strand, within Psyr_4990at 5920.747 kb on + strandat 5920.752 kb on - strandat 5920.754 kb on + strandat 5920.802 kb on - strandat 5920.802 kb on - strandat 5920.804 kb on + strandat 5920.805 kb on - strandat 5920.805 kb on - strandat 5920.805 kb on - strandat 5920.844 kb on + strandat 5920.845 kb on - strandat 5920.874 kb on + strandat 5920.875 kb on - strandat 5920.875 kb on - strandat 5920.895 kb on + strandat 5920.896 kb on - strandat 5920.922 kb on + strandat 5920.922 kb on + strandat 5920.923 kb on - strandat 5920.923 kb on - strandat 5920.940 kb on - strandat 5921.048 kb on + strand, within Psyr_4991at 5921.127 kb on + strand, within Psyr_4991at 5921.159 kb on - strand, within Psyr_4991at 5921.212 kb on - strand, within Psyr_4991at 5921.226 kb on - strand, within Psyr_4991at 5921.377 kb on + strandat 5921.391 kb on + strandat 5921.464 kb on - strandat 5921.472 kb on + strandat 5921.472 kb on + strandat 5921.473 kb on - strandat 5921.478 kb on + strandat 5921.479 kb on - strandat 5921.479 kb on - strandat 5921.504 kb on + strandat 5921.504 kb on + strandat 5921.505 kb on - strandat 5921.578 kb on + strandat 5921.578 kb on + strandat 5921.667 kb on + strandat 5921.667 kb on + strandat 5921.668 kb on - strandat 5921.668 kb on - strandat 5921.668 kb on - strandat 5921.743 kb on + strandat 5921.743 kb on + strandat 5921.744 kb on - strandat 5921.744 kb on - strandat 5921.744 kb on - strandat 5921.799 kb on - strandat 5921.814 kb on - strandat 5921.814 kb on - strandat 5921.814 kb on - strandat 5921.814 kb on - strandat 5922.329 kb on - strand, within Psyr_4992at 5922.329 kb on - strand, within Psyr_4992at 5922.329 kb on - strand, within Psyr_4992at 5922.329 kb on - strand, within Psyr_4992

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM
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5,920,019 - Psyr_4990 0.62 +1.0
5,920,039 - Psyr_4990 0.63 -1.0
5,920,039 - Psyr_4990 0.63 -0.6
5,920,039 - Psyr_4990 0.63 -0.1
5,920,097 + Psyr_4990 0.65 -2.1
5,920,097 + Psyr_4990 0.65 +1.0
5,920,097 + Psyr_4990 0.65 -0.1
5,920,097 + Psyr_4990 0.65 +0.4
5,920,107 + Psyr_4990 0.66 -0.1
5,920,108 - Psyr_4990 0.66 -0.0
5,920,108 - Psyr_4990 0.66 -1.1
5,920,113 + Psyr_4990 0.66 +0.8
5,920,237 - Psyr_4990 0.71 +0.1
5,920,237 - Psyr_4990 0.71 +2.2
5,920,237 - Psyr_4990 0.71 -0.9
5,920,237 - Psyr_4990 0.71 -1.4
5,920,239 - Psyr_4990 0.71 -0.2
5,920,239 - Psyr_4990 0.71 +0.3
5,920,239 - Psyr_4990 0.71 +0.2
5,920,239 - Psyr_4990 0.71 +0.4
5,920,243 - Psyr_4990 0.71 -0.8
5,920,311 + Psyr_4990 0.73 +0.6
5,920,312 - Psyr_4990 0.73 -0.8
5,920,315 - Psyr_4990 0.74 +0.2
5,920,444 + Psyr_4990 0.78 +4.0
5,920,444 + Psyr_4990 0.78 -0.0
5,920,444 + Psyr_4990 0.78 +1.0
5,920,444 + Psyr_4990 0.78 -0.1
5,920,445 - Psyr_4990 0.79 +0.1
5,920,445 - Psyr_4990 0.79 -0.9
5,920,445 - Psyr_4990 0.79 -0.3
5,920,445 - Psyr_4990 0.79 +1.5
5,920,445 - Psyr_4990 0.79 +0.3
5,920,462 - Psyr_4990 0.79 +0.6
5,920,489 - Psyr_4990 0.80 -0.5
5,920,489 - Psyr_4990 0.80 -0.7
5,920,494 - Psyr_4990 0.80 -0.2
5,920,507 - Psyr_4990 0.81 -1.2
5,920,507 - Psyr_4990 0.81 -1.8
5,920,532 + Psyr_4990 0.82 +0.3
5,920,579 - Psyr_4990 0.84 +0.1
5,920,587 - Psyr_4990 0.84 +0.6
5,920,628 - Psyr_4990 0.86 -0.9
5,920,656 - Psyr_4990 0.87 +0.8
5,920,747 + +0.7
5,920,752 - -0.7
5,920,754 + -0.2
5,920,802 - -0.7
5,920,802 - +0.4
5,920,804 + +1.0
5,920,805 - +1.0
5,920,805 - +3.2
5,920,805 - +1.1
5,920,844 + +0.0
5,920,845 - -0.2
5,920,874 + +2.3
5,920,875 - -0.3
5,920,875 - +0.2
5,920,895 + -1.3
5,920,896 - +0.8
5,920,922 + -0.0
5,920,922 + +0.1
5,920,923 - -0.7
5,920,923 - -0.0
5,920,940 - +2.6
5,921,048 + Psyr_4991 0.12 -1.9
5,921,127 + Psyr_4991 0.36 +3.0
5,921,159 - Psyr_4991 0.46 -2.8
5,921,212 - Psyr_4991 0.63 -1.0
5,921,226 - Psyr_4991 0.67 -2.4
5,921,377 + +0.9
5,921,391 + -0.1
5,921,464 - -0.3
5,921,472 + -0.6
5,921,472 + -1.5
5,921,473 - +0.7
5,921,478 + -0.3
5,921,479 - +0.1
5,921,479 - -0.6
5,921,504 + +2.4
5,921,504 + -0.1
5,921,505 - +0.2
5,921,578 + -0.2
5,921,578 + -1.2
5,921,667 + +0.9
5,921,667 + +2.4
5,921,668 - +1.1
5,921,668 - +0.3
5,921,668 - +0.4
5,921,743 + +0.2
5,921,743 + -0.4
5,921,744 - +0.4
5,921,744 - +0.0
5,921,744 - -0.2
5,921,799 - -2.0
5,921,814 - -0.1
5,921,814 - -0.4
5,921,814 - +0.4
5,921,814 - +0.0
5,922,329 - Psyr_4992 0.41 -1.4
5,922,329 - Psyr_4992 0.41 -0.0
5,922,329 - Psyr_4992 0.41 +0.6
5,922,329 - Psyr_4992 0.41 -0.4

Or see this region's nucleotide sequence