Experiment: KB with Solanesol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4671 and Psyr_4672 are separated by 8 nucleotides Psyr_4672 and Psyr_4673 overlap by 4 nucleotides Psyr_4673 and Psyr_4674 overlap by 8 nucleotides
Psyr_4671: Psyr_4671 - coenzyme PQQ synthesis protein B, at 5,537,417 to 5,538,328
_4671
Psyr_4672: Psyr_4672 - Coenzyme PQQ synthesis C, at 5,538,337 to 5,539,092
_4672
Psyr_4673: Psyr_4673 - Coenzyme PQQ synthesis D, at 5,539,089 to 5,539,373
_4673
Psyr_4674: Psyr_4674 - Radical SAM, at 5,539,366 to 5,540,535
_4674
Position (kb) 5538
5539
5540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.420 kb on + strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.421 kb on - strand at 5537.433 kb on + strand at 5537.433 kb on + strand at 5537.433 kb on + strand at 5537.919 kb on - strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.002 kb on + strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.003 kb on - strand, within Psyr_4671 at 5538.401 kb on - strand at 5538.401 kb on - strand at 5538.403 kb on + strand at 5538.403 kb on + strand at 5538.404 kb on - strand at 5538.404 kb on - strand at 5538.404 kb on - strand at 5538.404 kb on - strand at 5538.404 kb on - strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.412 kb on + strand at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.413 kb on - strand, within Psyr_4672 at 5538.436 kb on + strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.437 kb on - strand, within Psyr_4672 at 5538.490 kb on + strand, within Psyr_4672 at 5538.494 kb on - strand, within Psyr_4672 at 5538.494 kb on - strand, within Psyr_4672 at 5538.853 kb on + strand, within Psyr_4672 at 5538.853 kb on + strand, within Psyr_4672 at 5538.859 kb on + strand, within Psyr_4672 at 5538.859 kb on + strand, within Psyr_4672 at 5538.859 kb on + strand, within Psyr_4672 at 5538.859 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.928 kb on + strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.929 kb on - strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.933 kb on + strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.934 kb on - strand, within Psyr_4672 at 5538.937 kb on + strand, within Psyr_4672 at 5538.937 kb on + strand, within Psyr_4672 at 5538.937 kb on + strand, within Psyr_4672 at 5538.938 kb on - strand, within Psyr_4672 at 5538.954 kb on + strand, within Psyr_4672 at 5538.954 kb on + strand, within Psyr_4672 at 5538.954 kb on + strand, within Psyr_4672 at 5538.954 kb on + strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5538.955 kb on - strand, within Psyr_4672 at 5539.043 kb on - strand at 5539.089 kb on - strand at 5539.376 kb on + strand at 5539.376 kb on + strand at 5539.376 kb on + strand at 5539.376 kb on + strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.377 kb on - strand at 5539.400 kb on - strand at 5539.400 kb on - strand at 5539.400 kb on - strand at 5539.400 kb on - strand at 5539.400 kb on - strand at 5539.400 kb on - strand at 5539.404 kb on - strand at 5539.457 kb on - strand at 5539.481 kb on - strand at 5539.661 kb on - strand, within Psyr_4674 at 5539.661 kb on - strand, within Psyr_4674 at 5539.661 kb on - strand, within Psyr_4674 at 5539.966 kb on + strand, within Psyr_4674 at 5539.966 kb on + strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674 at 5539.967 kb on - strand, within Psyr_4674
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM remove 5,537,420 + +1.2 5,537,420 + -2.1 5,537,420 + +0.9 5,537,420 + +0.1 5,537,420 + -0.6 5,537,420 + -0.3 5,537,420 + -0.3 5,537,420 + -1.1 5,537,420 + -0.3 5,537,420 + +0.0 5,537,420 + +0.4 5,537,420 + +0.0 5,537,420 + -1.2 5,537,420 + +0.3 5,537,420 + -0.3 5,537,421 - +0.6 5,537,421 - -0.3 5,537,421 - +0.1 5,537,421 - -0.4 5,537,421 - -0.7 5,537,421 - +0.1 5,537,421 - -0.9 5,537,421 - +1.1 5,537,421 - -0.2 5,537,421 - +1.2 5,537,421 - -0.1 5,537,433 + -0.8 5,537,433 + -0.5 5,537,433 + +1.0 5,537,919 - Psyr_4671 0.55 +0.4 5,538,002 + Psyr_4671 0.64 -0.4 5,538,002 + Psyr_4671 0.64 -1.2 5,538,002 + Psyr_4671 0.64 -1.4 5,538,002 + Psyr_4671 0.64 -0.1 5,538,002 + Psyr_4671 0.64 +0.9 5,538,002 + Psyr_4671 0.64 -1.1 5,538,002 + Psyr_4671 0.64 +0.5 5,538,003 - Psyr_4671 0.64 -0.1 5,538,003 - Psyr_4671 0.64 -0.3 5,538,003 - Psyr_4671 0.64 +1.7 5,538,003 - Psyr_4671 0.64 -1.1 5,538,003 - Psyr_4671 0.64 -0.4 5,538,003 - Psyr_4671 0.64 +0.3 5,538,401 - -0.1 5,538,401 - -0.3 5,538,403 + +1.7 5,538,403 + +1.2 5,538,404 - +0.3 5,538,404 - +0.2 5,538,404 - +0.8 5,538,404 - +0.4 5,538,404 - +0.1 5,538,412 + +1.3 5,538,412 + +0.0 5,538,412 + -0.3 5,538,412 + -0.7 5,538,412 + -0.8 5,538,412 + -0.2 5,538,413 - Psyr_4672 0.10 +0.1 5,538,413 - Psyr_4672 0.10 -1.7 5,538,413 - Psyr_4672 0.10 +0.9 5,538,413 - Psyr_4672 0.10 -0.3 5,538,413 - Psyr_4672 0.10 +3.8 5,538,413 - Psyr_4672 0.10 -1.3 5,538,413 - Psyr_4672 0.10 -0.1 5,538,413 - Psyr_4672 0.10 -0.5 5,538,436 + Psyr_4672 0.13 -1.3 5,538,437 - Psyr_4672 0.13 +0.2 5,538,437 - Psyr_4672 0.13 +1.2 5,538,437 - Psyr_4672 0.13 +2.8 5,538,437 - Psyr_4672 0.13 -0.8 5,538,437 - Psyr_4672 0.13 -0.3 5,538,490 + Psyr_4672 0.20 -1.3 5,538,494 - Psyr_4672 0.21 -1.2 5,538,494 - Psyr_4672 0.21 -0.1 5,538,853 + Psyr_4672 0.68 +1.2 5,538,853 + Psyr_4672 0.68 -2.0 5,538,859 + Psyr_4672 0.69 -1.3 5,538,859 + Psyr_4672 0.69 -2.1 5,538,859 + Psyr_4672 0.69 +3.6 5,538,859 + Psyr_4672 0.69 -0.1 5,538,928 + Psyr_4672 0.78 +1.4 5,538,928 + Psyr_4672 0.78 -0.8 5,538,928 + Psyr_4672 0.78 -0.7 5,538,928 + Psyr_4672 0.78 +2.1 5,538,928 + Psyr_4672 0.78 +0.9 5,538,928 + Psyr_4672 0.78 +0.4 5,538,928 + Psyr_4672 0.78 -0.6 5,538,929 - Psyr_4672 0.78 -1.2 5,538,929 - Psyr_4672 0.78 -0.1 5,538,929 - Psyr_4672 0.78 -1.0 5,538,929 - Psyr_4672 0.78 -1.0 5,538,929 - Psyr_4672 0.78 -0.5 5,538,933 + Psyr_4672 0.79 -0.2 5,538,933 + Psyr_4672 0.79 +0.5 5,538,933 + Psyr_4672 0.79 -0.1 5,538,933 + Psyr_4672 0.79 -0.3 5,538,933 + Psyr_4672 0.79 +1.4 5,538,933 + Psyr_4672 0.79 +0.2 5,538,933 + Psyr_4672 0.79 +0.2 5,538,933 + Psyr_4672 0.79 -0.3 5,538,933 + Psyr_4672 0.79 +1.0 5,538,933 + Psyr_4672 0.79 -0.6 5,538,933 + Psyr_4672 0.79 +0.1 5,538,934 - Psyr_4672 0.79 -0.3 5,538,934 - Psyr_4672 0.79 -0.2 5,538,934 - Psyr_4672 0.79 -0.2 5,538,937 + Psyr_4672 0.79 +0.7 5,538,937 + Psyr_4672 0.79 -0.3 5,538,937 + Psyr_4672 0.79 -1.0 5,538,938 - Psyr_4672 0.79 +0.5 5,538,954 + Psyr_4672 0.82 -0.4 5,538,954 + Psyr_4672 0.82 -0.5 5,538,954 + Psyr_4672 0.82 -0.5 5,538,954 + Psyr_4672 0.82 +3.6 5,538,955 - Psyr_4672 0.82 +0.1 5,538,955 - Psyr_4672 0.82 -0.5 5,538,955 - Psyr_4672 0.82 +0.1 5,538,955 - Psyr_4672 0.82 +1.3 5,539,043 - -0.5 5,539,089 - -0.5 5,539,376 + -1.4 5,539,376 + -0.5 5,539,376 + +0.9 5,539,376 + -3.5 5,539,377 - -2.2 5,539,377 - +0.7 5,539,377 - -1.2 5,539,377 - -0.7 5,539,377 - -1.0 5,539,377 - +0.8 5,539,400 - -0.2 5,539,400 - -0.7 5,539,400 - +3.2 5,539,400 - -0.0 5,539,400 - -0.5 5,539,400 - +1.8 5,539,404 - +0.4 5,539,457 - -0.7 5,539,481 - +0.5 5,539,661 - Psyr_4674 0.25 -0.2 5,539,661 - Psyr_4674 0.25 +1.0 5,539,661 - Psyr_4674 0.25 +0.1 5,539,966 + Psyr_4674 0.51 +0.1 5,539,966 + Psyr_4674 0.51 -0.5 5,539,967 - Psyr_4674 0.51 +2.2 5,539,967 - Psyr_4674 0.51 -0.2 5,539,967 - Psyr_4674 0.51 -1.7 5,539,967 - Psyr_4674 0.51 +3.8 5,539,967 - Psyr_4674 0.51 -0.1 5,539,967 - Psyr_4674 0.51 -0.5
Or see this region's nucleotide sequence