Experiment: KB with Solanesol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4133 and Psyr_4134 are separated by 123 nucleotides Psyr_4134 and Psyr_4135 are separated by 153 nucleotides
Psyr_4133: Psyr_4133 - histidinol dehydrogenase, at 4,923,796 to 4,925,142
_4133
Psyr_4134: Psyr_4134 - ATP phosphoribosyltransferase (homohexameric), at 4,925,266 to 4,925,901
_4134
Psyr_4135: Psyr_4135 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 4,926,055 to 4,927,320
_4135
Position (kb) 4925
4926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.478 kb on + strand, within Psyr_4133 at 4924.479 kb on - strand, within Psyr_4133 at 4924.479 kb on - strand, within Psyr_4133 at 4924.479 kb on - strand, within Psyr_4133 at 4924.479 kb on - strand, within Psyr_4133 at 4924.479 kb on - strand, within Psyr_4133 at 4924.479 kb on - strand, within Psyr_4133 at 4924.479 kb on - strand, within Psyr_4133 at 4924.479 kb on - strand, within Psyr_4133 at 4924.479 kb on - strand, within Psyr_4133 at 4924.479 kb on - strand, within Psyr_4133 at 4924.479 kb on - strand, within Psyr_4133 at 4924.482 kb on + strand, within Psyr_4133 at 4924.482 kb on + strand, within Psyr_4133 at 4924.482 kb on + strand, within Psyr_4133 at 4924.483 kb on - strand, within Psyr_4133 at 4924.483 kb on - strand, within Psyr_4133 at 4924.533 kb on - strand, within Psyr_4133 at 4924.638 kb on + strand, within Psyr_4133 at 4924.713 kb on - strand, within Psyr_4133 at 4924.736 kb on + strand, within Psyr_4133 at 4924.736 kb on + strand, within Psyr_4133 at 4924.737 kb on - strand, within Psyr_4133 at 4924.737 kb on - strand, within Psyr_4133 at 4924.737 kb on - strand, within Psyr_4133 at 4924.737 kb on - strand, within Psyr_4133 at 4924.737 kb on - strand, within Psyr_4133 at 4924.799 kb on + strand, within Psyr_4133 at 4924.800 kb on - strand, within Psyr_4133 at 4924.800 kb on - strand, within Psyr_4133 at 4924.800 kb on - strand, within Psyr_4133 at 4925.156 kb on + strand at 4925.156 kb on + strand at 4925.157 kb on - strand at 4925.185 kb on + strand at 4925.185 kb on + strand at 4925.194 kb on - strand at 4925.492 kb on + strand, within Psyr_4134 at 4925.492 kb on + strand, within Psyr_4134 at 4925.493 kb on - strand, within Psyr_4134 at 4925.493 kb on - strand, within Psyr_4134 at 4925.493 kb on - strand, within Psyr_4134 at 4925.493 kb on - strand, within Psyr_4134 at 4925.532 kb on - strand, within Psyr_4134 at 4925.532 kb on - strand, within Psyr_4134 at 4925.534 kb on + strand, within Psyr_4134 at 4925.534 kb on + strand, within Psyr_4134 at 4925.535 kb on - strand, within Psyr_4134 at 4925.654 kb on + strand, within Psyr_4134 at 4925.654 kb on + strand, within Psyr_4134 at 4925.654 kb on + strand, within Psyr_4134 at 4925.654 kb on + strand, within Psyr_4134 at 4925.655 kb on - strand, within Psyr_4134 at 4925.672 kb on + strand, within Psyr_4134 at 4925.672 kb on + strand, within Psyr_4134 at 4925.672 kb on + strand, within Psyr_4134 at 4925.673 kb on - strand, within Psyr_4134 at 4925.673 kb on - strand, within Psyr_4134 at 4925.673 kb on - strand, within Psyr_4134 at 4925.673 kb on - strand, within Psyr_4134 at 4925.729 kb on + strand, within Psyr_4134 at 4925.729 kb on + strand, within Psyr_4134 at 4925.729 kb on + strand, within Psyr_4134 at 4925.729 kb on + strand, within Psyr_4134 at 4925.729 kb on + strand, within Psyr_4134 at 4925.729 kb on + strand, within Psyr_4134 at 4925.729 kb on + strand, within Psyr_4134 at 4925.730 kb on - strand, within Psyr_4134 at 4925.730 kb on - strand, within Psyr_4134 at 4925.730 kb on - strand, within Psyr_4134 at 4925.730 kb on - strand, within Psyr_4134 at 4925.730 kb on - strand, within Psyr_4134 at 4925.730 kb on - strand, within Psyr_4134 at 4925.730 kb on - strand, within Psyr_4134 at 4925.730 kb on - strand, within Psyr_4134 at 4925.910 kb on + strand at 4925.910 kb on + strand at 4925.910 kb on + strand at 4925.911 kb on - strand at 4925.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM remove 4,924,478 + Psyr_4133 0.51 +1.1 4,924,478 + Psyr_4133 0.51 +0.4 4,924,478 + Psyr_4133 0.51 -1.2 4,924,478 + Psyr_4133 0.51 -1.4 4,924,478 + Psyr_4133 0.51 +1.1 4,924,478 + Psyr_4133 0.51 +1.1 4,924,478 + Psyr_4133 0.51 -0.9 4,924,478 + Psyr_4133 0.51 -0.4 4,924,478 + Psyr_4133 0.51 -2.3 4,924,478 + Psyr_4133 0.51 -1.0 4,924,478 + Psyr_4133 0.51 +0.0 4,924,478 + Psyr_4133 0.51 +0.3 4,924,478 + Psyr_4133 0.51 +1.1 4,924,478 + Psyr_4133 0.51 +2.1 4,924,479 - Psyr_4133 0.51 +0.1 4,924,479 - Psyr_4133 0.51 -0.2 4,924,479 - Psyr_4133 0.51 -2.2 4,924,479 - Psyr_4133 0.51 -1.4 4,924,479 - Psyr_4133 0.51 +0.4 4,924,479 - Psyr_4133 0.51 -0.2 4,924,479 - Psyr_4133 0.51 +2.3 4,924,479 - Psyr_4133 0.51 -3.1 4,924,479 - Psyr_4133 0.51 +0.4 4,924,479 - Psyr_4133 0.51 -0.5 4,924,479 - Psyr_4133 0.51 -2.6 4,924,482 + Psyr_4133 0.51 -0.4 4,924,482 + Psyr_4133 0.51 -0.9 4,924,482 + Psyr_4133 0.51 -0.0 4,924,483 - Psyr_4133 0.51 +0.1 4,924,483 - Psyr_4133 0.51 -0.2 4,924,533 - Psyr_4133 0.55 -1.4 4,924,638 + Psyr_4133 0.63 +0.4 4,924,713 - Psyr_4133 0.68 -0.3 4,924,736 + Psyr_4133 0.70 -0.2 4,924,736 + Psyr_4133 0.70 +2.7 4,924,737 - Psyr_4133 0.70 -1.1 4,924,737 - Psyr_4133 0.70 +1.6 4,924,737 - Psyr_4133 0.70 +0.5 4,924,737 - Psyr_4133 0.70 -0.4 4,924,737 - Psyr_4133 0.70 -1.3 4,924,799 + Psyr_4133 0.74 +0.5 4,924,800 - Psyr_4133 0.75 +0.7 4,924,800 - Psyr_4133 0.75 -0.4 4,924,800 - Psyr_4133 0.75 +0.3 4,925,156 + -1.1 4,925,156 + +2.7 4,925,157 - +0.6 4,925,185 + -2.0 4,925,185 + -0.1 4,925,194 - -1.1 4,925,492 + Psyr_4134 0.36 +1.1 4,925,492 + Psyr_4134 0.36 -1.0 4,925,493 - Psyr_4134 0.36 +0.3 4,925,493 - Psyr_4134 0.36 +1.5 4,925,493 - Psyr_4134 0.36 +2.5 4,925,493 - Psyr_4134 0.36 -3.6 4,925,532 - Psyr_4134 0.42 -0.9 4,925,532 - Psyr_4134 0.42 +0.5 4,925,534 + Psyr_4134 0.42 -1.0 4,925,534 + Psyr_4134 0.42 -0.4 4,925,535 - Psyr_4134 0.42 -0.3 4,925,654 + Psyr_4134 0.61 +0.3 4,925,654 + Psyr_4134 0.61 +0.1 4,925,654 + Psyr_4134 0.61 -0.8 4,925,654 + Psyr_4134 0.61 -2.7 4,925,655 - Psyr_4134 0.61 -1.0 4,925,672 + Psyr_4134 0.64 -0.7 4,925,672 + Psyr_4134 0.64 -3.4 4,925,672 + Psyr_4134 0.64 -1.5 4,925,673 - Psyr_4134 0.64 -0.2 4,925,673 - Psyr_4134 0.64 -3.0 4,925,673 - Psyr_4134 0.64 -0.4 4,925,673 - Psyr_4134 0.64 -1.6 4,925,729 + Psyr_4134 0.73 -0.8 4,925,729 + Psyr_4134 0.73 +1.3 4,925,729 + Psyr_4134 0.73 -0.4 4,925,729 + Psyr_4134 0.73 -0.4 4,925,729 + Psyr_4134 0.73 +1.1 4,925,729 + Psyr_4134 0.73 +0.1 4,925,729 + Psyr_4134 0.73 +3.7 4,925,730 - Psyr_4134 0.73 +1.8 4,925,730 - Psyr_4134 0.73 +2.9 4,925,730 - Psyr_4134 0.73 +1.1 4,925,730 - Psyr_4134 0.73 -0.3 4,925,730 - Psyr_4134 0.73 +1.5 4,925,730 - Psyr_4134 0.73 +0.0 4,925,730 - Psyr_4134 0.73 -0.1 4,925,730 - Psyr_4134 0.73 -0.4 4,925,910 + -3.7 4,925,910 + -1.2 4,925,910 + +1.9 4,925,911 - -0.2 4,925,911 - +1.1
Or see this region's nucleotide sequence