Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3738

Experiment: KB with Solanesol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3736 and Psyr_3737 are separated by 95 nucleotidesPsyr_3737 and Psyr_3738 are separated by 93 nucleotidesPsyr_3738 and Psyr_3739 are separated by 177 nucleotidesPsyr_3739 and Psyr_3740 are separated by 10 nucleotides Psyr_3736: Psyr_3736 - Peptidoglycan-binding LysM, at 4,449,181 to 4,451,394 _3736 Psyr_3737: Psyr_3737 - transcriptional regulator, MarR family, at 4,451,490 to 4,451,924 _3737 Psyr_3738: Psyr_3738 - ATP-dependent DNA helicase RecQ, at 4,452,018 to 4,454,147 _3738 Psyr_3739: Psyr_3739 - conserved hypothetical protein, at 4,454,325 to 4,454,912 _3739 Psyr_3740: Psyr_3740 - Protein of unknown function DUF454, at 4,454,923 to 4,455,336 _3740 Position (kb) 4452 4453 4454 4455Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4451.037 kb on - strand, within Psyr_3736at 4451.432 kb on - strandat 4451.432 kb on - strandat 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.739 kb on + strand, within Psyr_3737at 4451.740 kb on - strand, within Psyr_3737at 4451.925 kb on - strandat 4451.946 kb on + strandat 4451.946 kb on + strandat 4451.946 kb on + strandat 4451.947 kb on - strandat 4451.947 kb on - strandat 4451.951 kb on - strandat 4451.951 kb on - strandat 4451.953 kb on + strandat 4451.962 kb on - strandat 4451.962 kb on - strandat 4451.974 kb on + strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4452.020 kb on - strandat 4452.020 kb on - strandat 4452.021 kb on + strandat 4452.021 kb on + strandat 4452.021 kb on + strandat 4452.021 kb on + strandat 4452.021 kb on + strandat 4452.022 kb on - strandat 4452.022 kb on - strandat 4452.059 kb on - strandat 4452.235 kb on + strand, within Psyr_3738at 4452.235 kb on + strand, within Psyr_3738at 4452.704 kb on - strand, within Psyr_3738at 4452.898 kb on + strand, within Psyr_3738at 4452.898 kb on + strand, within Psyr_3738at 4452.898 kb on + strand, within Psyr_3738at 4452.899 kb on - strand, within Psyr_3738at 4453.006 kb on + strand, within Psyr_3738at 4453.006 kb on + strand, within Psyr_3738at 4453.213 kb on + strand, within Psyr_3738at 4453.213 kb on + strand, within Psyr_3738at 4453.214 kb on - strand, within Psyr_3738at 4453.214 kb on - strand, within Psyr_3738at 4453.214 kb on - strand, within Psyr_3738at 4453.214 kb on - strand, within Psyr_3738at 4453.214 kb on - strand, within Psyr_3738at 4453.214 kb on - strand, within Psyr_3738at 4453.447 kb on + strand, within Psyr_3738at 4453.447 kb on + strand, within Psyr_3738at 4453.687 kb on + strand, within Psyr_3738at 4453.687 kb on + strand, within Psyr_3738at 4453.688 kb on - strand, within Psyr_3738at 4453.813 kb on + strand, within Psyr_3738at 4453.813 kb on + strand, within Psyr_3738at 4454.104 kb on + strandat 4454.120 kb on + strandat 4454.121 kb on - strandat 4454.121 kb on - strandat 4454.125 kb on - strandat 4454.148 kb on - strandat 4454.191 kb on - strandat 4454.192 kb on + strandat 4454.288 kb on - strandat 4454.345 kb on - strandat 4454.400 kb on + strand, within Psyr_3739at 4454.400 kb on + strand, within Psyr_3739at 4454.400 kb on + strand, within Psyr_3739at 4454.401 kb on - strand, within Psyr_3739at 4454.401 kb on - strand, within Psyr_3739at 4454.418 kb on + strand, within Psyr_3739at 4454.419 kb on - strand, within Psyr_3739at 4454.853 kb on + strand, within Psyr_3739at 4454.854 kb on - strandat 4454.968 kb on + strand, within Psyr_3740at 4455.097 kb on + strand, within Psyr_3740at 4455.097 kb on + strand, within Psyr_3740at 4455.098 kb on - strand, within Psyr_3740at 4455.146 kb on - strand, within Psyr_3740

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM
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4,451,037 - Psyr_3736 0.84 +0.7
4,451,432 - +0.2
4,451,432 - +0.7
4,451,586 + Psyr_3737 0.22 -0.8
4,451,586 + Psyr_3737 0.22 -0.8
4,451,586 + Psyr_3737 0.22 -1.2
4,451,586 + Psyr_3737 0.22 -0.4
4,451,586 + Psyr_3737 0.22 +0.4
4,451,587 - Psyr_3737 0.22 +0.4
4,451,587 - Psyr_3737 0.22 -0.6
4,451,587 - Psyr_3737 0.22 +0.4
4,451,587 - Psyr_3737 0.22 +1.2
4,451,587 - Psyr_3737 0.22 -0.6
4,451,587 - Psyr_3737 0.22 -0.8
4,451,587 - Psyr_3737 0.22 -0.2
4,451,587 - Psyr_3737 0.22 +1.4
4,451,739 + Psyr_3737 0.57 +0.3
4,451,740 - Psyr_3737 0.57 +0.2
4,451,925 - -0.4
4,451,946 + -1.4
4,451,946 + -0.4
4,451,946 + +0.7
4,451,947 - +0.1
4,451,947 - +0.7
4,451,951 - +1.6
4,451,951 - +0.6
4,451,953 + +0.2
4,451,962 - +0.6
4,451,962 - -2.2
4,451,974 + +0.5
4,451,975 - -0.5
4,451,975 - +1.7
4,451,975 - -2.2
4,451,975 - +0.4
4,451,975 - -0.9
4,451,975 - -1.4
4,452,020 - +0.2
4,452,020 - +1.5
4,452,021 + -1.5
4,452,021 + -0.0
4,452,021 + -1.6
4,452,021 + -0.5
4,452,021 + -0.6
4,452,022 - -0.3
4,452,022 - -0.7
4,452,059 - -0.4
4,452,235 + Psyr_3738 0.10 -0.6
4,452,235 + Psyr_3738 0.10 -0.3
4,452,704 - Psyr_3738 0.32 +0.8
4,452,898 + Psyr_3738 0.41 +1.2
4,452,898 + Psyr_3738 0.41 +0.0
4,452,898 + Psyr_3738 0.41 -0.0
4,452,899 - Psyr_3738 0.41 +0.2
4,453,006 + Psyr_3738 0.46 -0.6
4,453,006 + Psyr_3738 0.46 -0.2
4,453,213 + Psyr_3738 0.56 -0.2
4,453,213 + Psyr_3738 0.56 +1.6
4,453,214 - Psyr_3738 0.56 -2.0
4,453,214 - Psyr_3738 0.56 +0.7
4,453,214 - Psyr_3738 0.56 -0.1
4,453,214 - Psyr_3738 0.56 -0.9
4,453,214 - Psyr_3738 0.56 -0.9
4,453,214 - Psyr_3738 0.56 +0.5
4,453,447 + Psyr_3738 0.67 +0.4
4,453,447 + Psyr_3738 0.67 +1.2
4,453,687 + Psyr_3738 0.78 -0.7
4,453,687 + Psyr_3738 0.78 +1.4
4,453,688 - Psyr_3738 0.78 +0.8
4,453,813 + Psyr_3738 0.84 -1.2
4,453,813 + Psyr_3738 0.84 -1.0
4,454,104 + +0.9
4,454,120 + +1.0
4,454,121 - -2.3
4,454,121 - +1.6
4,454,125 - +0.0
4,454,148 - +0.2
4,454,191 - -0.8
4,454,192 + -2.0
4,454,288 - +3.2
4,454,345 - -1.0
4,454,400 + Psyr_3739 0.13 +0.8
4,454,400 + Psyr_3739 0.13 -0.7
4,454,400 + Psyr_3739 0.13 -1.0
4,454,401 - Psyr_3739 0.13 -0.5
4,454,401 - Psyr_3739 0.13 -2.3
4,454,418 + Psyr_3739 0.16 +1.0
4,454,419 - Psyr_3739 0.16 -0.4
4,454,853 + Psyr_3739 0.90 -1.0
4,454,854 - +0.3
4,454,968 + Psyr_3740 0.11 +1.2
4,455,097 + Psyr_3740 0.42 -1.1
4,455,097 + Psyr_3740 0.42 +3.2
4,455,098 - Psyr_3740 0.42 +0.7
4,455,146 - Psyr_3740 0.54 +0.3

Or see this region's nucleotide sequence