Experiment: KB with Solanesol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3619 and Psyr_3620 are separated by 69 nucleotides Psyr_3620 and Psyr_3621 are separated by 135 nucleotides Psyr_3621 and Psyr_3622 are separated by 169 nucleotides
Psyr_3619: Psyr_3619 - Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal, at 4,303,040 to 4,304,713
_3619
Psyr_3620: Psyr_3620 - hypothetical protein, at 4,304,783 to 4,305,031
_3620
Psyr_3621: Psyr_3621 - conserved hypothetical protein, at 4,305,167 to 4,305,928
_3621
Psyr_3622: Psyr_3622 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, at 4,306,098 to 4,307,444
_3622
Position (kb) 4305
4306 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4304.846 kb on - strand, within Psyr_3620 at 4304.895 kb on - strand, within Psyr_3620 at 4304.931 kb on - strand, within Psyr_3620 at 4304.931 kb on - strand, within Psyr_3620 at 4304.942 kb on - strand, within Psyr_3620 at 4305.077 kb on + strand at 4305.164 kb on + strand at 4305.164 kb on + strand at 4305.164 kb on + strand at 4305.165 kb on - strand at 4305.330 kb on + strand, within Psyr_3621 at 4305.331 kb on - strand, within Psyr_3621 at 4305.492 kb on + strand, within Psyr_3621 at 4305.492 kb on + strand, within Psyr_3621 at 4305.493 kb on - strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.564 kb on + strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.565 kb on - strand, within Psyr_3621 at 4305.762 kb on + strand, within Psyr_3621 at 4305.762 kb on + strand, within Psyr_3621 at 4305.841 kb on - strand, within Psyr_3621 at 4305.906 kb on - strand at 4306.060 kb on + strand at 4306.088 kb on - strand at 4306.207 kb on - strand at 4306.346 kb on + strand, within Psyr_3622 at 4306.346 kb on + strand, within Psyr_3622 at 4306.569 kb on + strand, within Psyr_3622 at 4306.569 kb on + strand, within Psyr_3622 at 4306.569 kb on + strand, within Psyr_3622 at 4306.569 kb on + strand, within Psyr_3622 at 4306.570 kb on - strand, within Psyr_3622 at 4306.570 kb on - strand, within Psyr_3622 at 4306.570 kb on - strand, within Psyr_3622 at 4306.570 kb on - strand, within Psyr_3622 at 4306.692 kb on + strand, within Psyr_3622 at 4306.693 kb on - strand, within Psyr_3622 at 4306.693 kb on - strand, within Psyr_3622 at 4306.815 kb on + strand, within Psyr_3622 at 4306.816 kb on - strand, within Psyr_3622 at 4306.860 kb on + strand, within Psyr_3622 at 4306.860 kb on + strand, within Psyr_3622 at 4306.860 kb on + strand, within Psyr_3622 at 4306.860 kb on + strand, within Psyr_3622 at 4306.861 kb on - strand, within Psyr_3622 at 4306.861 kb on - strand, within Psyr_3622
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM remove 4,304,846 - Psyr_3620 0.25 +0.9 4,304,895 - Psyr_3620 0.45 -1.4 4,304,931 - Psyr_3620 0.59 -1.1 4,304,931 - Psyr_3620 0.59 +2.8 4,304,942 - Psyr_3620 0.64 +1.4 4,305,077 + -1.0 4,305,164 + -1.5 4,305,164 + +0.7 4,305,164 + +0.3 4,305,165 - -1.6 4,305,330 + Psyr_3621 0.21 -1.9 4,305,331 - Psyr_3621 0.22 +0.2 4,305,492 + Psyr_3621 0.43 -1.6 4,305,492 + Psyr_3621 0.43 -1.2 4,305,493 - Psyr_3621 0.43 +3.5 4,305,564 + Psyr_3621 0.52 +1.4 4,305,564 + Psyr_3621 0.52 -0.8 4,305,564 + Psyr_3621 0.52 +0.8 4,305,564 + Psyr_3621 0.52 +0.8 4,305,564 + Psyr_3621 0.52 +0.4 4,305,564 + Psyr_3621 0.52 +2.2 4,305,564 + Psyr_3621 0.52 -1.4 4,305,564 + Psyr_3621 0.52 +0.1 4,305,565 - Psyr_3621 0.52 +1.8 4,305,565 - Psyr_3621 0.52 -0.7 4,305,565 - Psyr_3621 0.52 +1.0 4,305,565 - Psyr_3621 0.52 -1.4 4,305,565 - Psyr_3621 0.52 -0.7 4,305,565 - Psyr_3621 0.52 -0.9 4,305,565 - Psyr_3621 0.52 -0.6 4,305,565 - Psyr_3621 0.52 +0.7 4,305,565 - Psyr_3621 0.52 -1.8 4,305,565 - Psyr_3621 0.52 +1.0 4,305,565 - Psyr_3621 0.52 +0.0 4,305,565 - Psyr_3621 0.52 +3.2 4,305,565 - Psyr_3621 0.52 +0.5 4,305,565 - Psyr_3621 0.52 -0.9 4,305,565 - Psyr_3621 0.52 +1.4 4,305,565 - Psyr_3621 0.52 -0.4 4,305,762 + Psyr_3621 0.78 -2.3 4,305,762 + Psyr_3621 0.78 -1.0 4,305,841 - Psyr_3621 0.88 +2.2 4,305,906 - +2.9 4,306,060 + +0.1 4,306,088 - +0.0 4,306,207 - -0.5 4,306,346 + Psyr_3622 0.18 -0.5 4,306,346 + Psyr_3622 0.18 -2.4 4,306,569 + Psyr_3622 0.35 +0.1 4,306,569 + Psyr_3622 0.35 +0.5 4,306,569 + Psyr_3622 0.35 +1.0 4,306,569 + Psyr_3622 0.35 -0.7 4,306,570 - Psyr_3622 0.35 +0.5 4,306,570 - Psyr_3622 0.35 -0.4 4,306,570 - Psyr_3622 0.35 +1.8 4,306,570 - Psyr_3622 0.35 -0.1 4,306,692 + Psyr_3622 0.44 +0.0 4,306,693 - Psyr_3622 0.44 +0.9 4,306,693 - Psyr_3622 0.44 +1.6 4,306,815 + Psyr_3622 0.53 +0.4 4,306,816 - Psyr_3622 0.53 -0.0 4,306,860 + Psyr_3622 0.57 +0.6 4,306,860 + Psyr_3622 0.57 +1.2 4,306,860 + Psyr_3622 0.57 +1.8 4,306,860 + Psyr_3622 0.57 +0.4 4,306,861 - Psyr_3622 0.57 +0.6 4,306,861 - Psyr_3622 0.57 +1.8
Or see this region's nucleotide sequence