Experiment: KB with Solanesol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3409 and Psyr_3410 are separated by 50 nucleotides Psyr_3410 and Psyr_3411 are separated by 93 nucleotides Psyr_3411 and Psyr_3412 are separated by 1 nucleotides
Psyr_3409: Psyr_3409 - conserved hypothetical protein, at 4,071,519 to 4,073,348
_3409
Psyr_3410: Psyr_3410 - hypothetical protein, at 4,073,399 to 4,076,032
_3410
Psyr_3411: Psyr_3411 - conserved hypothetical protein, at 4,076,126 to 4,076,584
_3411
Psyr_3412: Psyr_3412 - conserved domain protein, at 4,076,586 to 4,077,374
_3412
Position (kb) 4073
4074
4075
4076
4077 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4072.413 kb on - strand, within Psyr_3409 at 4072.509 kb on + strand, within Psyr_3409 at 4072.509 kb on + strand, within Psyr_3409 at 4072.510 kb on - strand, within Psyr_3409 at 4072.510 kb on - strand, within Psyr_3409 at 4072.510 kb on - strand, within Psyr_3409 at 4072.521 kb on - strand, within Psyr_3409 at 4072.620 kb on - strand, within Psyr_3409 at 4072.756 kb on + strand, within Psyr_3409 at 4072.757 kb on - strand, within Psyr_3409 at 4072.757 kb on - strand, within Psyr_3409 at 4072.771 kb on - strand, within Psyr_3409 at 4072.833 kb on - strand, within Psyr_3409 at 4072.872 kb on + strand, within Psyr_3409 at 4072.875 kb on + strand, within Psyr_3409 at 4072.992 kb on - strand, within Psyr_3409 at 4073.069 kb on - strand, within Psyr_3409 at 4073.103 kb on + strand, within Psyr_3409 at 4073.104 kb on - strand, within Psyr_3409 at 4073.104 kb on - strand, within Psyr_3409 at 4073.104 kb on - strand, within Psyr_3409 at 4073.104 kb on - strand, within Psyr_3409 at 4073.104 kb on - strand, within Psyr_3409 at 4073.202 kb on - strand at 4073.222 kb on - strand at 4073.267 kb on - strand at 4073.267 kb on - strand at 4073.371 kb on - strand at 4073.410 kb on - strand at 4073.450 kb on + strand at 4073.450 kb on + strand at 4073.450 kb on + strand at 4073.450 kb on + strand at 4073.450 kb on + strand at 4073.451 kb on - strand at 4073.451 kb on - strand at 4073.451 kb on - strand at 4073.451 kb on - strand at 4073.451 kb on - strand at 4073.451 kb on - strand at 4073.481 kb on + strand at 4073.482 kb on - strand at 4073.508 kb on + strand at 4073.508 kb on + strand at 4073.584 kb on + strand at 4073.588 kb on + strand at 4073.588 kb on + strand at 4073.588 kb on + strand at 4073.588 kb on + strand at 4073.589 kb on - strand at 4073.589 kb on - strand at 4073.589 kb on - strand at 4073.589 kb on - strand at 4073.589 kb on - strand at 4073.589 kb on - strand at 4073.636 kb on + strand at 4073.636 kb on + strand at 4073.637 kb on - strand at 4073.637 kb on - strand at 4073.637 kb on - strand at 4073.637 kb on - strand at 4073.681 kb on + strand, within Psyr_3410 at 4073.681 kb on + strand, within Psyr_3410 at 4073.681 kb on + strand, within Psyr_3410 at 4073.681 kb on + strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.682 kb on - strand, within Psyr_3410 at 4073.687 kb on + strand, within Psyr_3410 at 4073.688 kb on - strand, within Psyr_3410 at 4073.689 kb on + strand, within Psyr_3410 at 4073.689 kb on + strand, within Psyr_3410 at 4073.689 kb on + strand, within Psyr_3410 at 4073.690 kb on - strand, within Psyr_3410 at 4073.690 kb on - strand, within Psyr_3410 at 4073.737 kb on - strand, within Psyr_3410 at 4073.885 kb on - strand, within Psyr_3410 at 4073.885 kb on - strand, within Psyr_3410 at 4073.912 kb on + strand, within Psyr_3410 at 4073.912 kb on + strand, within Psyr_3410 at 4073.913 kb on - strand, within Psyr_3410 at 4073.913 kb on - strand, within Psyr_3410 at 4073.913 kb on - strand, within Psyr_3410 at 4073.913 kb on - strand, within Psyr_3410 at 4073.965 kb on + strand, within Psyr_3410 at 4073.999 kb on - strand, within Psyr_3410 at 4073.999 kb on - strand, within Psyr_3410 at 4074.025 kb on + strand, within Psyr_3410 at 4074.026 kb on - strand, within Psyr_3410 at 4074.026 kb on - strand, within Psyr_3410 at 4074.089 kb on + strand, within Psyr_3410 at 4074.089 kb on + strand, within Psyr_3410 at 4074.089 kb on + strand, within Psyr_3410 at 4074.089 kb on + strand, within Psyr_3410 at 4074.089 kb on + strand, within Psyr_3410 at 4074.089 kb on + strand, within Psyr_3410 at 4074.090 kb on - strand, within Psyr_3410 at 4074.090 kb on - strand, within Psyr_3410 at 4074.090 kb on - strand, within Psyr_3410 at 4074.090 kb on - strand, within Psyr_3410 at 4074.090 kb on - strand, within Psyr_3410 at 4074.237 kb on + strand, within Psyr_3410 at 4074.312 kb on + strand, within Psyr_3410 at 4074.312 kb on + strand, within Psyr_3410 at 4074.389 kb on + strand, within Psyr_3410 at 4074.389 kb on + strand, within Psyr_3410 at 4074.390 kb on - strand, within Psyr_3410 at 4074.517 kb on + strand, within Psyr_3410 at 4074.549 kb on - strand, within Psyr_3410 at 4074.551 kb on + strand, within Psyr_3410 at 4074.551 kb on + strand, within Psyr_3410 at 4074.551 kb on + strand, within Psyr_3410 at 4074.551 kb on + strand, within Psyr_3410 at 4074.551 kb on + strand, within Psyr_3410 at 4074.552 kb on - strand, within Psyr_3410 at 4074.552 kb on - strand, within Psyr_3410 at 4074.674 kb on + strand, within Psyr_3410 at 4074.728 kb on + strand, within Psyr_3410 at 4074.728 kb on + strand, within Psyr_3410 at 4074.729 kb on - strand, within Psyr_3410 at 4074.731 kb on + strand, within Psyr_3410 at 4074.775 kb on - strand, within Psyr_3410 at 4074.778 kb on - strand, within Psyr_3410 at 4074.778 kb on - strand, within Psyr_3410 at 4074.870 kb on + strand, within Psyr_3410 at 4074.870 kb on + strand, within Psyr_3410 at 4074.870 kb on + strand, within Psyr_3410 at 4074.870 kb on + strand, within Psyr_3410 at 4074.871 kb on - strand, within Psyr_3410 at 4074.871 kb on - strand, within Psyr_3410 at 4074.968 kb on + strand, within Psyr_3410 at 4074.968 kb on + strand, within Psyr_3410 at 4074.969 kb on - strand, within Psyr_3410 at 4074.977 kb on + strand, within Psyr_3410 at 4074.977 kb on + strand, within Psyr_3410 at 4074.977 kb on + strand, within Psyr_3410 at 4074.977 kb on + strand, within Psyr_3410 at 4074.977 kb on + strand, within Psyr_3410 at 4074.977 kb on + strand, within Psyr_3410 at 4074.977 kb on + strand, within Psyr_3410 at 4074.977 kb on + strand, within Psyr_3410 at 4074.977 kb on + strand, within Psyr_3410 at 4074.978 kb on - strand, within Psyr_3410 at 4074.978 kb on - strand, within Psyr_3410 at 4074.978 kb on - strand, within Psyr_3410 at 4074.978 kb on - strand, within Psyr_3410 at 4074.978 kb on - strand, within Psyr_3410 at 4074.978 kb on - strand, within Psyr_3410 at 4074.978 kb on - strand, within Psyr_3410 at 4074.978 kb on - strand, within Psyr_3410 at 4074.978 kb on - strand, within Psyr_3410 at 4074.992 kb on - strand, within Psyr_3410 at 4075.038 kb on - strand, within Psyr_3410 at 4075.038 kb on - strand, within Psyr_3410 at 4075.076 kb on + strand, within Psyr_3410 at 4075.076 kb on + strand, within Psyr_3410 at 4075.078 kb on + strand, within Psyr_3410 at 4075.126 kb on + strand, within Psyr_3410 at 4075.126 kb on + strand, within Psyr_3410 at 4075.127 kb on - strand, within Psyr_3410 at 4075.127 kb on - strand, within Psyr_3410 at 4075.127 kb on - strand, within Psyr_3410 at 4075.127 kb on - strand, within Psyr_3410 at 4075.353 kb on + strand, within Psyr_3410 at 4075.354 kb on - strand, within Psyr_3410 at 4075.409 kb on + strand, within Psyr_3410 at 4075.410 kb on - strand, within Psyr_3410 at 4075.410 kb on - strand, within Psyr_3410 at 4075.443 kb on + strand, within Psyr_3410 at 4075.529 kb on + strand, within Psyr_3410 at 4075.529 kb on + strand, within Psyr_3410 at 4075.529 kb on + strand, within Psyr_3410 at 4075.530 kb on - strand, within Psyr_3410 at 4075.530 kb on - strand, within Psyr_3410 at 4075.530 kb on - strand, within Psyr_3410 at 4075.530 kb on - strand, within Psyr_3410 at 4075.530 kb on - strand, within Psyr_3410 at 4075.622 kb on + strand, within Psyr_3410 at 4075.736 kb on + strand, within Psyr_3410 at 4075.736 kb on + strand, within Psyr_3410 at 4075.871 kb on + strand at 4075.871 kb on + strand at 4075.955 kb on + strand at 4075.955 kb on + strand at 4075.956 kb on - strand at 4075.956 kb on - strand at 4076.405 kb on + strand, within Psyr_3411 at 4076.405 kb on + strand, within Psyr_3411 at 4076.405 kb on + strand, within Psyr_3411 at 4076.405 kb on + strand, within Psyr_3411 at 4076.405 kb on + strand, within Psyr_3411 at 4076.405 kb on + strand, within Psyr_3411 at 4076.406 kb on - strand, within Psyr_3411 at 4076.406 kb on - strand, within Psyr_3411 at 4076.438 kb on + strand, within Psyr_3411 at 4076.439 kb on - strand, within Psyr_3411 at 4076.439 kb on - strand, within Psyr_3411 at 4076.505 kb on + strand, within Psyr_3411 at 4076.527 kb on + strand, within Psyr_3411 at 4076.528 kb on - strand, within Psyr_3411 at 4076.528 kb on - strand, within Psyr_3411 at 4076.573 kb on + strand at 4076.726 kb on - strand, within Psyr_3412
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM remove 4,072,413 - Psyr_3409 0.49 -0.6 4,072,509 + Psyr_3409 0.54 +2.4 4,072,509 + Psyr_3409 0.54 -1.7 4,072,510 - Psyr_3409 0.54 -1.7 4,072,510 - Psyr_3409 0.54 -0.7 4,072,510 - Psyr_3409 0.54 -2.6 4,072,521 - Psyr_3409 0.55 -0.3 4,072,620 - Psyr_3409 0.60 +2.1 4,072,756 + Psyr_3409 0.68 -1.6 4,072,757 - Psyr_3409 0.68 -0.8 4,072,757 - Psyr_3409 0.68 +0.2 4,072,771 - Psyr_3409 0.68 -1.4 4,072,833 - Psyr_3409 0.72 +1.6 4,072,872 + Psyr_3409 0.74 +0.1 4,072,875 + Psyr_3409 0.74 -2.9 4,072,992 - Psyr_3409 0.80 +0.6 4,073,069 - Psyr_3409 0.85 +0.7 4,073,103 + Psyr_3409 0.87 -0.3 4,073,104 - Psyr_3409 0.87 -1.9 4,073,104 - Psyr_3409 0.87 -1.1 4,073,104 - Psyr_3409 0.87 -0.5 4,073,104 - Psyr_3409 0.87 -2.0 4,073,104 - Psyr_3409 0.87 +0.2 4,073,202 - -0.3 4,073,222 - +1.4 4,073,267 - -0.9 4,073,267 - +0.1 4,073,371 - +0.7 4,073,410 - -1.8 4,073,450 + -2.2 4,073,450 + +0.9 4,073,450 + +0.7 4,073,450 + -1.9 4,073,450 + -0.3 4,073,451 - +0.7 4,073,451 - -0.3 4,073,451 - +0.6 4,073,451 - -0.3 4,073,451 - +0.6 4,073,451 - +0.7 4,073,481 + -0.1 4,073,482 - -0.1 4,073,508 + -0.3 4,073,508 + -0.6 4,073,584 + +0.0 4,073,588 + -1.1 4,073,588 + -2.2 4,073,588 + +1.7 4,073,588 + -0.5 4,073,589 - -0.1 4,073,589 - +1.5 4,073,589 - +0.5 4,073,589 - -3.4 4,073,589 - +0.7 4,073,589 - +0.2 4,073,636 + -0.4 4,073,636 + +0.3 4,073,637 - -1.0 4,073,637 - +0.0 4,073,637 - +1.8 4,073,637 - +0.8 4,073,681 + Psyr_3410 0.11 +0.5 4,073,681 + Psyr_3410 0.11 -0.6 4,073,681 + Psyr_3410 0.11 +0.9 4,073,681 + Psyr_3410 0.11 +0.2 4,073,682 - Psyr_3410 0.11 -1.9 4,073,682 - Psyr_3410 0.11 -0.6 4,073,682 - Psyr_3410 0.11 +2.1 4,073,682 - Psyr_3410 0.11 -0.7 4,073,682 - Psyr_3410 0.11 -0.9 4,073,682 - Psyr_3410 0.11 -0.2 4,073,687 + Psyr_3410 0.11 -1.0 4,073,688 - Psyr_3410 0.11 +0.3 4,073,689 + Psyr_3410 0.11 -0.0 4,073,689 + Psyr_3410 0.11 +1.1 4,073,689 + Psyr_3410 0.11 -0.5 4,073,690 - Psyr_3410 0.11 -0.9 4,073,690 - Psyr_3410 0.11 +0.1 4,073,737 - Psyr_3410 0.13 +1.1 4,073,885 - Psyr_3410 0.18 +0.0 4,073,885 - Psyr_3410 0.18 +0.8 4,073,912 + Psyr_3410 0.19 +0.9 4,073,912 + Psyr_3410 0.19 +0.7 4,073,913 - Psyr_3410 0.20 +0.7 4,073,913 - Psyr_3410 0.20 +2.8 4,073,913 - Psyr_3410 0.20 -0.6 4,073,913 - Psyr_3410 0.20 -1.3 4,073,965 + Psyr_3410 0.21 +1.0 4,073,999 - Psyr_3410 0.23 +2.2 4,073,999 - Psyr_3410 0.23 -0.2 4,074,025 + Psyr_3410 0.24 -0.5 4,074,026 - Psyr_3410 0.24 -0.4 4,074,026 - Psyr_3410 0.24 -0.4 4,074,089 + Psyr_3410 0.26 +0.9 4,074,089 + Psyr_3410 0.26 +0.1 4,074,089 + Psyr_3410 0.26 +1.2 4,074,089 + Psyr_3410 0.26 +0.3 4,074,089 + Psyr_3410 0.26 +0.5 4,074,089 + Psyr_3410 0.26 +1.6 4,074,090 - Psyr_3410 0.26 +0.1 4,074,090 - Psyr_3410 0.26 -0.1 4,074,090 - Psyr_3410 0.26 +3.5 4,074,090 - Psyr_3410 0.26 -0.1 4,074,090 - Psyr_3410 0.26 +1.1 4,074,237 + Psyr_3410 0.32 -0.1 4,074,312 + Psyr_3410 0.35 -0.9 4,074,312 + Psyr_3410 0.35 -0.9 4,074,389 + Psyr_3410 0.38 -0.9 4,074,389 + Psyr_3410 0.38 +2.7 4,074,390 - Psyr_3410 0.38 -0.1 4,074,517 + Psyr_3410 0.42 +0.3 4,074,549 - Psyr_3410 0.44 +3.1 4,074,551 + Psyr_3410 0.44 +1.1 4,074,551 + Psyr_3410 0.44 +0.3 4,074,551 + Psyr_3410 0.44 +0.9 4,074,551 + Psyr_3410 0.44 +1.1 4,074,551 + Psyr_3410 0.44 +0.1 4,074,552 - Psyr_3410 0.44 +0.2 4,074,552 - Psyr_3410 0.44 -1.3 4,074,674 + Psyr_3410 0.48 -0.2 4,074,728 + Psyr_3410 0.50 +1.5 4,074,728 + Psyr_3410 0.50 -2.0 4,074,729 - Psyr_3410 0.50 +0.5 4,074,731 + Psyr_3410 0.51 +0.8 4,074,775 - Psyr_3410 0.52 -0.0 4,074,778 - Psyr_3410 0.52 -0.9 4,074,778 - Psyr_3410 0.52 -1.8 4,074,870 + Psyr_3410 0.56 +1.7 4,074,870 + Psyr_3410 0.56 -1.4 4,074,870 + Psyr_3410 0.56 +0.1 4,074,870 + Psyr_3410 0.56 +0.5 4,074,871 - Psyr_3410 0.56 +0.3 4,074,871 - Psyr_3410 0.56 +2.7 4,074,968 + Psyr_3410 0.60 -0.4 4,074,968 + Psyr_3410 0.60 +0.0 4,074,969 - Psyr_3410 0.60 +1.7 4,074,977 + Psyr_3410 0.60 +0.9 4,074,977 + Psyr_3410 0.60 +1.1 4,074,977 + Psyr_3410 0.60 -2.7 4,074,977 + Psyr_3410 0.60 -2.0 4,074,977 + Psyr_3410 0.60 +0.5 4,074,977 + Psyr_3410 0.60 +0.1 4,074,977 + Psyr_3410 0.60 -1.0 4,074,977 + Psyr_3410 0.60 -0.6 4,074,977 + Psyr_3410 0.60 +0.1 4,074,978 - Psyr_3410 0.60 -1.1 4,074,978 - Psyr_3410 0.60 -0.0 4,074,978 - Psyr_3410 0.60 +1.0 4,074,978 - Psyr_3410 0.60 -1.0 4,074,978 - Psyr_3410 0.60 +0.8 4,074,978 - Psyr_3410 0.60 -1.6 4,074,978 - Psyr_3410 0.60 -1.2 4,074,978 - Psyr_3410 0.60 -0.7 4,074,978 - Psyr_3410 0.60 +1.5 4,074,992 - Psyr_3410 0.60 -0.3 4,075,038 - Psyr_3410 0.62 +0.7 4,075,038 - Psyr_3410 0.62 -2.1 4,075,076 + Psyr_3410 0.64 +0.4 4,075,076 + Psyr_3410 0.64 +0.1 4,075,078 + Psyr_3410 0.64 -0.0 4,075,126 + Psyr_3410 0.66 +2.1 4,075,126 + Psyr_3410 0.66 +0.7 4,075,127 - Psyr_3410 0.66 -0.4 4,075,127 - Psyr_3410 0.66 +0.6 4,075,127 - Psyr_3410 0.66 +0.4 4,075,127 - Psyr_3410 0.66 -1.1 4,075,353 + Psyr_3410 0.74 +1.0 4,075,354 - Psyr_3410 0.74 +0.3 4,075,409 + Psyr_3410 0.76 -0.5 4,075,410 - Psyr_3410 0.76 +1.8 4,075,410 - Psyr_3410 0.76 +0.8 4,075,443 + Psyr_3410 0.78 +1.1 4,075,529 + Psyr_3410 0.81 -0.4 4,075,529 + Psyr_3410 0.81 +2.5 4,075,529 + Psyr_3410 0.81 -1.4 4,075,530 - Psyr_3410 0.81 +0.4 4,075,530 - Psyr_3410 0.81 -0.6 4,075,530 - Psyr_3410 0.81 +0.3 4,075,530 - Psyr_3410 0.81 -0.4 4,075,530 - Psyr_3410 0.81 +1.6 4,075,622 + Psyr_3410 0.84 -0.2 4,075,736 + Psyr_3410 0.89 +0.4 4,075,736 + Psyr_3410 0.89 -0.2 4,075,871 + +1.1 4,075,871 + +3.0 4,075,955 + -1.8 4,075,955 + +0.3 4,075,956 - +2.1 4,075,956 - -1.2 4,076,405 + Psyr_3411 0.61 +1.3 4,076,405 + Psyr_3411 0.61 +1.0 4,076,405 + Psyr_3411 0.61 +0.9 4,076,405 + Psyr_3411 0.61 +0.5 4,076,405 + Psyr_3411 0.61 -0.9 4,076,405 + Psyr_3411 0.61 -0.0 4,076,406 - Psyr_3411 0.61 -0.3 4,076,406 - Psyr_3411 0.61 -0.2 4,076,438 + Psyr_3411 0.68 -1.3 4,076,439 - Psyr_3411 0.68 -0.3 4,076,439 - Psyr_3411 0.68 -0.4 4,076,505 + Psyr_3411 0.83 +0.3 4,076,527 + Psyr_3411 0.87 -0.3 4,076,528 - Psyr_3411 0.88 +0.2 4,076,528 - Psyr_3411 0.88 -0.6 4,076,573 + -1.7 4,076,726 - Psyr_3412 0.18 +0.8
Or see this region's nucleotide sequence