Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2720

Experiment: KB with Solanesol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2718 and Psyr_2719 are separated by 321 nucleotidesPsyr_2719 and Psyr_2720 are separated by 5 nucleotidesPsyr_2720 and Psyr_2721 overlap by 4 nucleotidesPsyr_2721 and Psyr_2722 are separated by 86 nucleotides Psyr_2718: Psyr_2718 - Major royal jelly protein, at 3,300,251 to 3,301,435 _2718 Psyr_2719: Psyr_2719 - transcriptional regulator, TetR family, at 3,301,757 to 3,302,338 _2719 Psyr_2720: Psyr_2720 - Urea amidolyase-related protein, at 3,302,344 to 3,303,318 _2720 Psyr_2721: Psyr_2721 - Protein of unknown function DUF213, at 3,303,315 to 3,304,187 _2721 Psyr_2722: Psyr_2722 - LamB/YcsF, at 3,304,274 to 3,305,029 _2722 Position (kb) 3302 3303 3304Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3301.378 kb on + strandat 3301.590 kb on - strandat 3301.625 kb on - strandat 3301.625 kb on - strandat 3301.699 kb on + strandat 3301.699 kb on + strandat 3301.766 kb on - strandat 3301.766 kb on - strandat 3301.766 kb on - strandat 3301.766 kb on - strandat 3301.839 kb on - strand, within Psyr_2719at 3301.898 kb on + strand, within Psyr_2719at 3302.007 kb on - strand, within Psyr_2719at 3302.388 kb on - strandat 3302.704 kb on + strand, within Psyr_2720at 3302.762 kb on + strand, within Psyr_2720at 3302.786 kb on + strand, within Psyr_2720at 3302.786 kb on + strand, within Psyr_2720at 3302.786 kb on + strand, within Psyr_2720at 3302.787 kb on - strand, within Psyr_2720at 3302.787 kb on - strand, within Psyr_2720at 3302.787 kb on - strand, within Psyr_2720at 3302.787 kb on - strand, within Psyr_2720at 3302.787 kb on - strand, within Psyr_2720at 3302.892 kb on + strand, within Psyr_2720at 3302.927 kb on + strand, within Psyr_2720at 3302.927 kb on + strand, within Psyr_2720at 3302.984 kb on + strand, within Psyr_2720at 3302.985 kb on - strand, within Psyr_2720at 3303.117 kb on + strand, within Psyr_2720at 3303.117 kb on + strand, within Psyr_2720at 3303.255 kb on - strandat 3303.446 kb on - strand, within Psyr_2721at 3303.541 kb on + strand, within Psyr_2721at 3303.542 kb on - strand, within Psyr_2721at 3303.542 kb on - strand, within Psyr_2721at 3303.598 kb on + strand, within Psyr_2721at 3303.598 kb on + strand, within Psyr_2721at 3303.598 kb on + strand, within Psyr_2721at 3303.598 kb on + strand, within Psyr_2721at 3303.664 kb on + strand, within Psyr_2721at 3303.664 kb on + strand, within Psyr_2721at 3303.665 kb on - strand, within Psyr_2721at 3303.800 kb on + strand, within Psyr_2721at 3303.800 kb on + strand, within Psyr_2721at 3303.818 kb on - strand, within Psyr_2721at 3303.895 kb on + strand, within Psyr_2721at 3303.895 kb on + strand, within Psyr_2721at 3303.896 kb on - strand, within Psyr_2721at 3303.896 kb on - strand, within Psyr_2721at 3304.121 kb on + strandat 3304.121 kb on + strandat 3304.121 kb on + strandat 3304.121 kb on + strandat 3304.121 kb on + strandat 3304.121 kb on + strandat 3304.121 kb on + strandat 3304.122 kb on - strandat 3304.122 kb on - strandat 3304.122 kb on - strandat 3304.213 kb on + strandat 3304.214 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM
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3,301,378 + -0.6
3,301,590 - -0.5
3,301,625 - +0.0
3,301,625 - -2.0
3,301,699 + +0.3
3,301,699 + +0.6
3,301,766 - +0.4
3,301,766 - +0.9
3,301,766 - +1.8
3,301,766 - +0.9
3,301,839 - Psyr_2719 0.14 -0.0
3,301,898 + Psyr_2719 0.24 -2.2
3,302,007 - Psyr_2719 0.43 -0.9
3,302,388 - +1.3
3,302,704 + Psyr_2720 0.37 -1.2
3,302,762 + Psyr_2720 0.43 +0.2
3,302,786 + Psyr_2720 0.45 +0.6
3,302,786 + Psyr_2720 0.45 -0.1
3,302,786 + Psyr_2720 0.45 +1.3
3,302,787 - Psyr_2720 0.45 +0.8
3,302,787 - Psyr_2720 0.45 +0.3
3,302,787 - Psyr_2720 0.45 -0.1
3,302,787 - Psyr_2720 0.45 -0.9
3,302,787 - Psyr_2720 0.45 +0.2
3,302,892 + Psyr_2720 0.56 -0.8
3,302,927 + Psyr_2720 0.60 +0.5
3,302,927 + Psyr_2720 0.60 -0.7
3,302,984 + Psyr_2720 0.66 +0.3
3,302,985 - Psyr_2720 0.66 +1.3
3,303,117 + Psyr_2720 0.79 +1.2
3,303,117 + Psyr_2720 0.79 -0.3
3,303,255 - +0.3
3,303,446 - Psyr_2721 0.15 -0.8
3,303,541 + Psyr_2721 0.26 +0.3
3,303,542 - Psyr_2721 0.26 +0.1
3,303,542 - Psyr_2721 0.26 +0.4
3,303,598 + Psyr_2721 0.32 +1.9
3,303,598 + Psyr_2721 0.32 +1.3
3,303,598 + Psyr_2721 0.32 -0.8
3,303,598 + Psyr_2721 0.32 +1.9
3,303,664 + Psyr_2721 0.40 -0.7
3,303,664 + Psyr_2721 0.40 +0.0
3,303,665 - Psyr_2721 0.40 -0.2
3,303,800 + Psyr_2721 0.56 +0.6
3,303,800 + Psyr_2721 0.56 -1.4
3,303,818 - Psyr_2721 0.58 -3.2
3,303,895 + Psyr_2721 0.66 +2.9
3,303,895 + Psyr_2721 0.66 +0.7
3,303,896 - Psyr_2721 0.67 +0.8
3,303,896 - Psyr_2721 0.67 +0.3
3,304,121 + +0.3
3,304,121 + +3.0
3,304,121 + -0.5
3,304,121 + -0.3
3,304,121 + +0.1
3,304,121 + +0.9
3,304,121 + -0.5
3,304,122 - +0.5
3,304,122 - -0.1
3,304,122 - +2.3
3,304,213 + +0.3
3,304,214 - +0.5

Or see this region's nucleotide sequence