Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1704

Experiment: KB with Solanesol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1703 and Psyr_1704 are separated by 221 nucleotidesPsyr_1704 and Psyr_1705 are separated by 116 nucleotides Psyr_1703: Psyr_1703 - Fatty acid desaturase, at 1,912,821 to 1,913,873 _1703 Psyr_1704: Psyr_1704 - Amino acid adenylation, at 1,914,095 to 1,918,063 _1704 Psyr_1705: Psyr_1705 - Amino acid adenylation, at 1,918,180 to 1,930,740 _1705 Position (kb) 1914 1915 1916 1917 1918 1919Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1913.187 kb on + strand, within Psyr_1703at 1913.269 kb on + strand, within Psyr_1703at 1913.276 kb on - strand, within Psyr_1703at 1913.307 kb on + strand, within Psyr_1703at 1913.403 kb on + strand, within Psyr_1703at 1913.404 kb on - strand, within Psyr_1703at 1913.405 kb on + strand, within Psyr_1703at 1913.426 kb on + strand, within Psyr_1703at 1913.486 kb on + strand, within Psyr_1703at 1913.486 kb on + strand, within Psyr_1703at 1913.487 kb on - strand, within Psyr_1703at 1913.487 kb on - strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.489 kb on - strand, within Psyr_1703at 1913.489 kb on - strand, within Psyr_1703at 1913.492 kb on - strand, within Psyr_1703at 1913.497 kb on + strand, within Psyr_1703at 1913.599 kb on + strand, within Psyr_1703at 1913.643 kb on + strand, within Psyr_1703at 1913.643 kb on + strand, within Psyr_1703at 1913.722 kb on + strand, within Psyr_1703at 1913.722 kb on + strand, within Psyr_1703at 1913.722 kb on + strand, within Psyr_1703at 1913.722 kb on + strand, within Psyr_1703at 1913.722 kb on + strand, within Psyr_1703at 1913.722 kb on + strand, within Psyr_1703at 1913.723 kb on - strand, within Psyr_1703at 1913.723 kb on - strand, within Psyr_1703at 1913.723 kb on - strand, within Psyr_1703at 1913.723 kb on - strand, within Psyr_1703at 1913.723 kb on - strand, within Psyr_1703at 1913.723 kb on - strand, within Psyr_1703at 1913.738 kb on + strand, within Psyr_1703at 1913.847 kb on - strandat 1913.926 kb on - strandat 1913.927 kb on + strandat 1913.928 kb on - strandat 1913.928 kb on - strandat 1913.928 kb on - strandat 1913.933 kb on - strandat 1913.933 kb on - strandat 1913.954 kb on + strandat 1913.975 kb on + strandat 1914.005 kb on + strandat 1914.076 kb on + strandat 1914.077 kb on - strandat 1914.169 kb on + strandat 1914.169 kb on + strandat 1914.169 kb on + strandat 1914.169 kb on + strandat 1914.169 kb on + strandat 1914.170 kb on - strandat 1914.170 kb on - strandat 1914.170 kb on - strandat 1914.170 kb on - strandat 1914.170 kb on - strandat 1914.170 kb on - strandat 1914.170 kb on - strandat 1914.170 kb on - strandat 1914.235 kb on - strandat 1914.235 kb on - strandat 1914.245 kb on - strandat 1914.251 kb on + strandat 1914.251 kb on + strandat 1914.254 kb on - strandat 1914.451 kb on - strandat 1914.461 kb on + strandat 1914.461 kb on + strandat 1914.461 kb on + strandat 1914.472 kb on + strandat 1914.564 kb on + strand, within Psyr_1704at 1914.564 kb on + strand, within Psyr_1704at 1914.565 kb on - strand, within Psyr_1704at 1914.565 kb on - strand, within Psyr_1704at 1914.565 kb on - strand, within Psyr_1704at 1914.565 kb on - strand, within Psyr_1704at 1914.642 kb on - strand, within Psyr_1704at 1914.881 kb on - strand, within Psyr_1704at 1914.906 kb on - strand, within Psyr_1704at 1914.920 kb on - strand, within Psyr_1704at 1915.096 kb on + strand, within Psyr_1704at 1915.097 kb on - strand, within Psyr_1704at 1915.164 kb on + strand, within Psyr_1704at 1915.165 kb on - strand, within Psyr_1704at 1915.223 kb on + strand, within Psyr_1704at 1915.224 kb on - strand, within Psyr_1704at 1915.224 kb on - strand, within Psyr_1704at 1915.224 kb on - strand, within Psyr_1704at 1915.400 kb on + strand, within Psyr_1704at 1915.400 kb on + strand, within Psyr_1704at 1915.401 kb on - strand, within Psyr_1704at 1915.507 kb on - strand, within Psyr_1704at 1915.507 kb on - strand, within Psyr_1704at 1915.625 kb on - strand, within Psyr_1704at 1915.748 kb on + strand, within Psyr_1704at 1915.749 kb on - strand, within Psyr_1704at 1916.007 kb on + strand, within Psyr_1704at 1916.007 kb on + strand, within Psyr_1704at 1916.008 kb on - strand, within Psyr_1704at 1916.008 kb on - strand, within Psyr_1704at 1916.008 kb on - strand, within Psyr_1704at 1916.183 kb on + strand, within Psyr_1704at 1916.183 kb on + strand, within Psyr_1704at 1916.242 kb on - strand, within Psyr_1704at 1916.298 kb on - strand, within Psyr_1704at 1916.344 kb on - strand, within Psyr_1704at 1916.390 kb on + strand, within Psyr_1704at 1916.391 kb on - strand, within Psyr_1704at 1916.576 kb on - strand, within Psyr_1704at 1916.637 kb on + strand, within Psyr_1704at 1916.637 kb on + strand, within Psyr_1704at 1916.744 kb on + strand, within Psyr_1704at 1916.745 kb on - strand, within Psyr_1704at 1916.747 kb on + strand, within Psyr_1704at 1916.747 kb on + strand, within Psyr_1704at 1916.747 kb on + strand, within Psyr_1704at 1916.747 kb on + strand, within Psyr_1704at 1916.747 kb on + strand, within Psyr_1704at 1916.747 kb on + strand, within Psyr_1704at 1916.747 kb on + strand, within Psyr_1704at 1916.748 kb on - strand, within Psyr_1704at 1916.748 kb on - strand, within Psyr_1704at 1916.748 kb on - strand, within Psyr_1704at 1916.748 kb on - strand, within Psyr_1704at 1916.748 kb on - strand, within Psyr_1704at 1916.748 kb on - strand, within Psyr_1704at 1916.748 kb on - strand, within Psyr_1704at 1916.748 kb on - strand, within Psyr_1704at 1916.748 kb on - strand, within Psyr_1704at 1916.748 kb on - strand, within Psyr_1704at 1916.755 kb on + strand, within Psyr_1704at 1916.755 kb on + strand, within Psyr_1704at 1916.755 kb on + strand, within Psyr_1704at 1916.755 kb on + strand, within Psyr_1704at 1916.755 kb on + strand, within Psyr_1704at 1916.756 kb on - strand, within Psyr_1704at 1916.756 kb on - strand, within Psyr_1704at 1916.756 kb on - strand, within Psyr_1704at 1916.756 kb on - strand, within Psyr_1704at 1916.834 kb on + strand, within Psyr_1704at 1916.834 kb on + strand, within Psyr_1704at 1916.834 kb on + strand, within Psyr_1704at 1916.834 kb on + strand, within Psyr_1704at 1916.834 kb on + strand, within Psyr_1704at 1916.835 kb on - strand, within Psyr_1704at 1916.835 kb on - strand, within Psyr_1704at 1916.835 kb on - strand, within Psyr_1704at 1916.835 kb on - strand, within Psyr_1704at 1916.835 kb on - strand, within Psyr_1704at 1916.835 kb on - strand, within Psyr_1704at 1916.835 kb on - strand, within Psyr_1704at 1917.084 kb on + strand, within Psyr_1704at 1917.084 kb on + strand, within Psyr_1704at 1917.084 kb on + strand, within Psyr_1704at 1917.084 kb on + strand, within Psyr_1704at 1917.084 kb on + strand, within Psyr_1704at 1917.084 kb on + strand, within Psyr_1704at 1917.085 kb on - strand, within Psyr_1704at 1917.085 kb on - strand, within Psyr_1704at 1917.200 kb on + strand, within Psyr_1704at 1917.272 kb on + strand, within Psyr_1704at 1917.272 kb on + strand, within Psyr_1704at 1917.272 kb on + strand, within Psyr_1704at 1917.272 kb on + strand, within Psyr_1704at 1917.272 kb on + strand, within Psyr_1704at 1917.272 kb on + strand, within Psyr_1704at 1917.325 kb on - strand, within Psyr_1704at 1917.325 kb on - strand, within Psyr_1704at 1917.357 kb on - strand, within Psyr_1704at 1917.517 kb on + strand, within Psyr_1704at 1917.518 kb on - strand, within Psyr_1704at 1917.518 kb on - strand, within Psyr_1704at 1917.695 kb on + strandat 1917.695 kb on + strandat 1917.695 kb on + strandat 1917.696 kb on - strandat 1918.134 kb on + strandat 1918.135 kb on - strandat 1918.321 kb on + strandat 1918.321 kb on + strandat 1918.322 kb on - strandat 1918.322 kb on - strandat 1918.322 kb on - strandat 1918.322 kb on - strandat 1918.344 kb on + strandat 1918.344 kb on + strandat 1918.396 kb on + strandat 1918.397 kb on - strandat 1918.556 kb on - strandat 1918.765 kb on + strandat 1918.978 kb on + strandat 1918.978 kb on + strandat 1918.978 kb on + strandat 1918.979 kb on - strandat 1918.979 kb on - strandat 1918.979 kb on - strandat 1918.979 kb on - strandat 1918.980 kb on + strandat 1918.980 kb on + strandat 1918.981 kb on - strandat 1918.981 kb on - strandat 1918.981 kb on - strandat 1918.981 kb on - strandat 1918.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM
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1,913,187 + Psyr_1703 0.35 -0.8
1,913,269 + Psyr_1703 0.43 -0.4
1,913,276 - Psyr_1703 0.43 +0.2
1,913,307 + Psyr_1703 0.46 -2.1
1,913,403 + Psyr_1703 0.55 -0.4
1,913,404 - Psyr_1703 0.55 -1.4
1,913,405 + Psyr_1703 0.55 +0.6
1,913,426 + Psyr_1703 0.57 -1.0
1,913,486 + Psyr_1703 0.63 +0.5
1,913,486 + Psyr_1703 0.63 -0.4
1,913,487 - Psyr_1703 0.63 -1.7
1,913,487 - Psyr_1703 0.63 -0.5
1,913,488 + Psyr_1703 0.63 -0.9
1,913,488 + Psyr_1703 0.63 -0.3
1,913,488 + Psyr_1703 0.63 -0.8
1,913,488 + Psyr_1703 0.63 -2.2
1,913,488 + Psyr_1703 0.63 +0.3
1,913,488 + Psyr_1703 0.63 +0.1
1,913,488 + Psyr_1703 0.63 +0.4
1,913,489 - Psyr_1703 0.63 -2.3
1,913,489 - Psyr_1703 0.63 -1.6
1,913,492 - Psyr_1703 0.64 -0.2
1,913,497 + Psyr_1703 0.64 +0.7
1,913,599 + Psyr_1703 0.74 +0.6
1,913,643 + Psyr_1703 0.78 -0.2
1,913,643 + Psyr_1703 0.78 +2.7
1,913,722 + Psyr_1703 0.86 +0.8
1,913,722 + Psyr_1703 0.86 +0.8
1,913,722 + Psyr_1703 0.86 +0.3
1,913,722 + Psyr_1703 0.86 -0.4
1,913,722 + Psyr_1703 0.86 -0.3
1,913,722 + Psyr_1703 0.86 -0.4
1,913,723 - Psyr_1703 0.86 +0.7
1,913,723 - Psyr_1703 0.86 +1.2
1,913,723 - Psyr_1703 0.86 -1.3
1,913,723 - Psyr_1703 0.86 -0.3
1,913,723 - Psyr_1703 0.86 -2.2
1,913,723 - Psyr_1703 0.86 -0.2
1,913,738 + Psyr_1703 0.87 +0.6
1,913,847 - -0.0
1,913,926 - +0.5
1,913,927 + +0.2
1,913,928 - -0.4
1,913,928 - +1.0
1,913,928 - +0.2
1,913,933 - -1.7
1,913,933 - -1.6
1,913,954 + -1.7
1,913,975 + -0.1
1,914,005 + -0.9
1,914,076 + +0.5
1,914,077 - +0.5
1,914,169 + -2.0
1,914,169 + -3.4
1,914,169 + -1.0
1,914,169 + -0.0
1,914,169 + -0.1
1,914,170 - -0.0
1,914,170 - -1.0
1,914,170 - -0.8
1,914,170 - +0.1
1,914,170 - -1.2
1,914,170 - +0.7
1,914,170 - +0.3
1,914,170 - +3.4
1,914,235 - -3.1
1,914,235 - +0.2
1,914,245 - -2.9
1,914,251 + -1.7
1,914,251 + -0.7
1,914,254 - -0.4
1,914,451 - -0.4
1,914,461 + +1.2
1,914,461 + -1.1
1,914,461 + -0.3
1,914,472 + +0.3
1,914,564 + Psyr_1704 0.12 +1.6
1,914,564 + Psyr_1704 0.12 -0.0
1,914,565 - Psyr_1704 0.12 +0.7
1,914,565 - Psyr_1704 0.12 +1.7
1,914,565 - Psyr_1704 0.12 -0.8
1,914,565 - Psyr_1704 0.12 -0.7
1,914,642 - Psyr_1704 0.14 -0.8
1,914,881 - Psyr_1704 0.20 +0.5
1,914,906 - Psyr_1704 0.20 -0.4
1,914,920 - Psyr_1704 0.21 -1.7
1,915,096 + Psyr_1704 0.25 -0.4
1,915,097 - Psyr_1704 0.25 +0.2
1,915,164 + Psyr_1704 0.27 -0.4
1,915,165 - Psyr_1704 0.27 -2.9
1,915,223 + Psyr_1704 0.28 +2.2
1,915,224 - Psyr_1704 0.28 +0.3
1,915,224 - Psyr_1704 0.28 -1.2
1,915,224 - Psyr_1704 0.28 +0.2
1,915,400 + Psyr_1704 0.33 -0.8
1,915,400 + Psyr_1704 0.33 +1.8
1,915,401 - Psyr_1704 0.33 +0.2
1,915,507 - Psyr_1704 0.36 +0.4
1,915,507 - Psyr_1704 0.36 -0.5
1,915,625 - Psyr_1704 0.39 -0.6
1,915,748 + Psyr_1704 0.42 +0.5
1,915,749 - Psyr_1704 0.42 -1.4
1,916,007 + Psyr_1704 0.48 +0.1
1,916,007 + Psyr_1704 0.48 +0.7
1,916,008 - Psyr_1704 0.48 +1.6
1,916,008 - Psyr_1704 0.48 +0.9
1,916,008 - Psyr_1704 0.48 -0.2
1,916,183 + Psyr_1704 0.53 -0.4
1,916,183 + Psyr_1704 0.53 -1.4
1,916,242 - Psyr_1704 0.54 +0.9
1,916,298 - Psyr_1704 0.56 -0.8
1,916,344 - Psyr_1704 0.57 -0.6
1,916,390 + Psyr_1704 0.58 +0.3
1,916,391 - Psyr_1704 0.58 +2.9
1,916,576 - Psyr_1704 0.63 +0.3
1,916,637 + Psyr_1704 0.64 +0.3
1,916,637 + Psyr_1704 0.64 +0.0
1,916,744 + Psyr_1704 0.67 -0.7
1,916,745 - Psyr_1704 0.67 +0.0
1,916,747 + Psyr_1704 0.67 +1.5
1,916,747 + Psyr_1704 0.67 +1.4
1,916,747 + Psyr_1704 0.67 +1.2
1,916,747 + Psyr_1704 0.67 +2.2
1,916,747 + Psyr_1704 0.67 -0.1
1,916,747 + Psyr_1704 0.67 -0.3
1,916,747 + Psyr_1704 0.67 +2.7
1,916,748 - Psyr_1704 0.67 -2.1
1,916,748 - Psyr_1704 0.67 +0.2
1,916,748 - Psyr_1704 0.67 -0.3
1,916,748 - Psyr_1704 0.67 -0.8
1,916,748 - Psyr_1704 0.67 -0.2
1,916,748 - Psyr_1704 0.67 -1.8
1,916,748 - Psyr_1704 0.67 +1.2
1,916,748 - Psyr_1704 0.67 -1.0
1,916,748 - Psyr_1704 0.67 +0.5
1,916,748 - Psyr_1704 0.67 -0.8
1,916,755 + Psyr_1704 0.67 +0.8
1,916,755 + Psyr_1704 0.67 +0.8
1,916,755 + Psyr_1704 0.67 +1.4
1,916,755 + Psyr_1704 0.67 -1.0
1,916,755 + Psyr_1704 0.67 -0.3
1,916,756 - Psyr_1704 0.67 -0.5
1,916,756 - Psyr_1704 0.67 -1.7
1,916,756 - Psyr_1704 0.67 -0.3
1,916,756 - Psyr_1704 0.67 -2.2
1,916,834 + Psyr_1704 0.69 +0.7
1,916,834 + Psyr_1704 0.69 -0.5
1,916,834 + Psyr_1704 0.69 -0.7
1,916,834 + Psyr_1704 0.69 -1.8
1,916,834 + Psyr_1704 0.69 -1.0
1,916,835 - Psyr_1704 0.69 -0.3
1,916,835 - Psyr_1704 0.69 +1.4
1,916,835 - Psyr_1704 0.69 -3.3
1,916,835 - Psyr_1704 0.69 -1.1
1,916,835 - Psyr_1704 0.69 +0.5
1,916,835 - Psyr_1704 0.69 +0.7
1,916,835 - Psyr_1704 0.69 -0.9
1,917,084 + Psyr_1704 0.75 +0.6
1,917,084 + Psyr_1704 0.75 +0.9
1,917,084 + Psyr_1704 0.75 +0.6
1,917,084 + Psyr_1704 0.75 +0.3
1,917,084 + Psyr_1704 0.75 +1.2
1,917,084 + Psyr_1704 0.75 -0.4
1,917,085 - Psyr_1704 0.75 +0.0
1,917,085 - Psyr_1704 0.75 +0.9
1,917,200 + Psyr_1704 0.78 -0.5
1,917,272 + Psyr_1704 0.80 +0.9
1,917,272 + Psyr_1704 0.80 +0.8
1,917,272 + Psyr_1704 0.80 +1.0
1,917,272 + Psyr_1704 0.80 -0.0
1,917,272 + Psyr_1704 0.80 +2.2
1,917,272 + Psyr_1704 0.80 -0.6
1,917,325 - Psyr_1704 0.81 +0.7
1,917,325 - Psyr_1704 0.81 +1.4
1,917,357 - Psyr_1704 0.82 +0.3
1,917,517 + Psyr_1704 0.86 -0.3
1,917,518 - Psyr_1704 0.86 -0.2
1,917,518 - Psyr_1704 0.86 -2.9
1,917,695 + +0.5
1,917,695 + +0.5
1,917,695 + -1.3
1,917,696 - +1.2
1,918,134 + +2.4
1,918,135 - +0.5
1,918,321 + +0.7
1,918,321 + +0.0
1,918,322 - +1.6
1,918,322 - -1.2
1,918,322 - +2.7
1,918,322 - +0.9
1,918,344 + +1.7
1,918,344 + +1.2
1,918,396 + -0.1
1,918,397 - +2.3
1,918,556 - +0.2
1,918,765 + +1.2
1,918,978 + +0.1
1,918,978 + -0.7
1,918,978 + -1.0
1,918,979 - -1.8
1,918,979 - +1.2
1,918,979 - -1.2
1,918,979 - -0.3
1,918,980 + +0.4
1,918,980 + +0.2
1,918,981 - +0.1
1,918,981 - +2.4
1,918,981 - +0.2
1,918,981 - -0.2
1,918,981 - -0.1

Or see this region's nucleotide sequence