Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1366

Experiment: KB with Solanesol 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1364 and Psyr_1365 are separated by 13 nucleotidesPsyr_1365 and Psyr_1366 are separated by 7 nucleotidesPsyr_1366 and Psyr_1367 are separated by 104 nucleotides Psyr_1364: Psyr_1364 - cell division protein FtsB, at 1,548,383 to 1,548,739 _1364 Psyr_1365: Psyr_1365 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,548,753 to 1,549,463 _1365 Psyr_1366: Psyr_1366 - transcriptional regulator, LysR family, at 1,549,471 to 1,550,367 _1366 Psyr_1367: Psyr_1367 - Zinc-containing alcohol dehydrogenase superfamily, at 1,550,472 to 1,551,584 _1367 Position (kb) 1549 1550 1551Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1548.472 kb on + strand, within Psyr_1364at 1548.737 kb on + strandat 1549.432 kb on + strandat 1549.482 kb on - strandat 1549.515 kb on - strandat 1549.646 kb on + strand, within Psyr_1366at 1549.646 kb on + strand, within Psyr_1366at 1549.647 kb on - strand, within Psyr_1366at 1549.649 kb on + strand, within Psyr_1366at 1549.666 kb on + strand, within Psyr_1366at 1549.666 kb on + strand, within Psyr_1366at 1549.713 kb on + strand, within Psyr_1366at 1549.713 kb on + strand, within Psyr_1366at 1549.713 kb on + strand, within Psyr_1366at 1549.714 kb on - strand, within Psyr_1366at 1549.850 kb on + strand, within Psyr_1366at 1549.850 kb on + strand, within Psyr_1366at 1549.850 kb on + strand, within Psyr_1366at 1549.851 kb on - strand, within Psyr_1366at 1549.851 kb on - strand, within Psyr_1366at 1549.851 kb on - strand, within Psyr_1366at 1549.851 kb on - strand, within Psyr_1366at 1549.851 kb on - strand, within Psyr_1366at 1549.871 kb on + strand, within Psyr_1366at 1549.871 kb on + strand, within Psyr_1366at 1549.871 kb on + strand, within Psyr_1366at 1549.871 kb on + strand, within Psyr_1366at 1549.871 kb on + strand, within Psyr_1366at 1549.871 kb on + strand, within Psyr_1366at 1549.871 kb on + strand, within Psyr_1366at 1549.872 kb on - strand, within Psyr_1366at 1549.872 kb on - strand, within Psyr_1366at 1549.872 kb on - strand, within Psyr_1366at 1550.009 kb on + strand, within Psyr_1366at 1550.010 kb on - strand, within Psyr_1366at 1550.214 kb on - strand, within Psyr_1366at 1550.364 kb on - strandat 1550.364 kb on - strandat 1550.380 kb on + strandat 1550.381 kb on - strandat 1550.431 kb on - strandat 1550.433 kb on + strandat 1550.433 kb on + strandat 1550.433 kb on + strandat 1550.434 kb on - strandat 1550.575 kb on + strandat 1550.576 kb on - strandat 1550.578 kb on + strandat 1550.578 kb on + strandat 1550.578 kb on + strandat 1550.579 kb on - strandat 1550.607 kb on + strand, within Psyr_1367at 1550.736 kb on + strand, within Psyr_1367at 1550.817 kb on - strand, within Psyr_1367at 1550.817 kb on - strand, within Psyr_1367at 1550.817 kb on - strand, within Psyr_1367at 1550.853 kb on + strand, within Psyr_1367at 1550.877 kb on + strand, within Psyr_1367at 1550.904 kb on + strand, within Psyr_1367at 1550.905 kb on - strand, within Psyr_1367at 1550.911 kb on + strand, within Psyr_1367at 1550.912 kb on - strand, within Psyr_1367at 1550.912 kb on - strand, within Psyr_1367at 1550.912 kb on - strand, within Psyr_1367

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM
remove
1,548,472 + Psyr_1364 0.25 +0.2
1,548,737 + -0.4
1,549,432 + -0.1
1,549,482 - +0.3
1,549,515 - -0.7
1,549,646 + Psyr_1366 0.20 -0.5
1,549,646 + Psyr_1366 0.20 +0.6
1,549,647 - Psyr_1366 0.20 +0.3
1,549,649 + Psyr_1366 0.20 -0.0
1,549,666 + Psyr_1366 0.22 -0.8
1,549,666 + Psyr_1366 0.22 +0.7
1,549,713 + Psyr_1366 0.27 +0.9
1,549,713 + Psyr_1366 0.27 +0.3
1,549,713 + Psyr_1366 0.27 -0.6
1,549,714 - Psyr_1366 0.27 +0.2
1,549,850 + Psyr_1366 0.42 -0.2
1,549,850 + Psyr_1366 0.42 -0.8
1,549,850 + Psyr_1366 0.42 -0.3
1,549,851 - Psyr_1366 0.42 -0.7
1,549,851 - Psyr_1366 0.42 -0.5
1,549,851 - Psyr_1366 0.42 +2.2
1,549,851 - Psyr_1366 0.42 +1.5
1,549,851 - Psyr_1366 0.42 +0.1
1,549,871 + Psyr_1366 0.45 -0.2
1,549,871 + Psyr_1366 0.45 +0.8
1,549,871 + Psyr_1366 0.45 +1.2
1,549,871 + Psyr_1366 0.45 +1.3
1,549,871 + Psyr_1366 0.45 -1.2
1,549,871 + Psyr_1366 0.45 +0.9
1,549,871 + Psyr_1366 0.45 +2.2
1,549,872 - Psyr_1366 0.45 +1.2
1,549,872 - Psyr_1366 0.45 +2.2
1,549,872 - Psyr_1366 0.45 -0.0
1,550,009 + Psyr_1366 0.60 -0.6
1,550,010 - Psyr_1366 0.60 +0.6
1,550,214 - Psyr_1366 0.83 +0.8
1,550,364 - -1.1
1,550,364 - +3.1
1,550,380 + +0.8
1,550,381 - -0.7
1,550,431 - -1.0
1,550,433 + -0.5
1,550,433 + +0.7
1,550,433 + -0.1
1,550,434 - +0.3
1,550,575 + +4.0
1,550,576 - -2.7
1,550,578 + -1.1
1,550,578 + +0.5
1,550,578 + +0.9
1,550,579 - -1.8
1,550,607 + Psyr_1367 0.12 -0.7
1,550,736 + Psyr_1367 0.24 +0.9
1,550,817 - Psyr_1367 0.31 -2.8
1,550,817 - Psyr_1367 0.31 -0.5
1,550,817 - Psyr_1367 0.31 -2.1
1,550,853 + Psyr_1367 0.34 -0.4
1,550,877 + Psyr_1367 0.36 -0.3
1,550,904 + Psyr_1367 0.39 +0.6
1,550,905 - Psyr_1367 0.39 +0.6
1,550,911 + Psyr_1367 0.39 -1.0
1,550,912 - Psyr_1367 0.40 -1.1
1,550,912 - Psyr_1367 0.40 -1.3
1,550,912 - Psyr_1367 0.40 -0.4

Or see this region's nucleotide sequence