Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1163

Experiment: KB with Solanesol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1161 and Psyr_1162 overlap by 4 nucleotidesPsyr_1162 and Psyr_1163 overlap by 1 nucleotidesPsyr_1163 and Psyr_1164 overlap by 4 nucleotides Psyr_1161: Psyr_1161 - transcriptional regulator, GntR family, at 1,315,662 to 1,316,348 _1161 Psyr_1162: Psyr_1162 - conserved hypothetical protein, at 1,316,345 to 1,316,740 _1162 Psyr_1163: Psyr_1163 - Isochorismatase hydrolase, at 1,316,740 to 1,317,417 _1163 Psyr_1164: Psyr_1164 - nucleoside ABC transporter ATP-binding protein, at 1,317,414 to 1,318,949 _1164 Position (kb) 1316 1317 1318Strain fitness (log2 ratio) -3 -2 -1 0 1at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.816 kb on + strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.817 kb on - strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.820 kb on + strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.821 kb on - strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.973 kb on + strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.974 kb on - strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.977 kb on + strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1315.978 kb on - strand, within Psyr_1161at 1316.021 kb on + strand, within Psyr_1161at 1316.022 kb on - strand, within Psyr_1161at 1316.098 kb on + strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.272 kb on + strand, within Psyr_1161at 1316.273 kb on - strand, within Psyr_1161at 1316.273 kb on - strand, within Psyr_1161at 1316.273 kb on - strand, within Psyr_1161at 1316.273 kb on - strand, within Psyr_1161at 1316.273 kb on - strand, within Psyr_1161at 1316.640 kb on + strand, within Psyr_1162at 1316.640 kb on + strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.641 kb on - strand, within Psyr_1162at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1316.859 kb on - strand, within Psyr_1163at 1317.269 kb on - strand, within Psyr_1163at 1317.531 kb on - strandat 1317.933 kb on + strand, within Psyr_1164at 1317.933 kb on + strand, within Psyr_1164at 1318.133 kb on + strand, within Psyr_1164at 1318.330 kb on + strand, within Psyr_1164at 1318.330 kb on + strand, within Psyr_1164at 1318.331 kb on - strand, within Psyr_1164

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Solanesol 10 mM
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1,315,816 + Psyr_1161 0.22 -0.4
1,315,816 + Psyr_1161 0.22 +0.0
1,315,816 + Psyr_1161 0.22 +1.4
1,315,816 + Psyr_1161 0.22 +1.2
1,315,816 + Psyr_1161 0.22 -1.0
1,315,817 - Psyr_1161 0.23 +0.7
1,315,817 - Psyr_1161 0.23 +0.8
1,315,817 - Psyr_1161 0.23 +0.4
1,315,817 - Psyr_1161 0.23 -1.0
1,315,820 + Psyr_1161 0.23 -1.8
1,315,820 + Psyr_1161 0.23 -0.4
1,315,820 + Psyr_1161 0.23 +0.5
1,315,820 + Psyr_1161 0.23 +1.2
1,315,820 + Psyr_1161 0.23 +0.9
1,315,820 + Psyr_1161 0.23 +0.5
1,315,820 + Psyr_1161 0.23 -0.8
1,315,820 + Psyr_1161 0.23 +1.2
1,315,820 + Psyr_1161 0.23 +1.2
1,315,821 - Psyr_1161 0.23 -1.4
1,315,821 - Psyr_1161 0.23 -2.3
1,315,821 - Psyr_1161 0.23 -3.4
1,315,821 - Psyr_1161 0.23 -0.1
1,315,821 - Psyr_1161 0.23 -1.7
1,315,821 - Psyr_1161 0.23 -1.5
1,315,821 - Psyr_1161 0.23 +0.1
1,315,821 - Psyr_1161 0.23 -0.8
1,315,821 - Psyr_1161 0.23 -0.5
1,315,973 + Psyr_1161 0.45 +1.6
1,315,973 + Psyr_1161 0.45 -1.1
1,315,973 + Psyr_1161 0.45 +0.6
1,315,974 - Psyr_1161 0.45 -3.4
1,315,974 - Psyr_1161 0.45 +0.2
1,315,974 - Psyr_1161 0.45 +0.4
1,315,974 - Psyr_1161 0.45 -0.6
1,315,974 - Psyr_1161 0.45 -0.6
1,315,974 - Psyr_1161 0.45 -1.5
1,315,974 - Psyr_1161 0.45 +0.2
1,315,974 - Psyr_1161 0.45 +0.1
1,315,974 - Psyr_1161 0.45 +0.6
1,315,974 - Psyr_1161 0.45 -0.2
1,315,974 - Psyr_1161 0.45 +1.0
1,315,974 - Psyr_1161 0.45 +0.2
1,315,977 + Psyr_1161 0.46 +0.5
1,315,977 + Psyr_1161 0.46 +0.3
1,315,977 + Psyr_1161 0.46 +1.6
1,315,977 + Psyr_1161 0.46 -0.2
1,315,977 + Psyr_1161 0.46 +0.4
1,315,977 + Psyr_1161 0.46 -0.5
1,315,977 + Psyr_1161 0.46 +0.2
1,315,978 - Psyr_1161 0.46 +1.2
1,315,978 - Psyr_1161 0.46 +0.1
1,315,978 - Psyr_1161 0.46 -1.8
1,315,978 - Psyr_1161 0.46 +0.2
1,315,978 - Psyr_1161 0.46 +0.3
1,315,978 - Psyr_1161 0.46 +0.6
1,315,978 - Psyr_1161 0.46 +0.4
1,315,978 - Psyr_1161 0.46 -0.7
1,315,978 - Psyr_1161 0.46 +0.9
1,315,978 - Psyr_1161 0.46 -1.5
1,315,978 - Psyr_1161 0.46 -1.4
1,315,978 - Psyr_1161 0.46 -1.3
1,316,021 + Psyr_1161 0.52 +0.7
1,316,022 - Psyr_1161 0.52 -1.1
1,316,098 + Psyr_1161 0.63 +1.2
1,316,272 + Psyr_1161 0.89 +0.2
1,316,272 + Psyr_1161 0.89 +0.7
1,316,273 - Psyr_1161 0.89 +0.3
1,316,273 - Psyr_1161 0.89 -0.2
1,316,273 - Psyr_1161 0.89 +0.5
1,316,273 - Psyr_1161 0.89 -0.0
1,316,273 - Psyr_1161 0.89 -1.5
1,316,640 + Psyr_1162 0.74 -1.6
1,316,640 + Psyr_1162 0.74 +0.2
1,316,641 - Psyr_1162 0.75 -1.6
1,316,641 - Psyr_1162 0.75 +0.3
1,316,641 - Psyr_1162 0.75 -0.3
1,316,641 - Psyr_1162 0.75 -0.2
1,316,641 - Psyr_1162 0.75 +0.2
1,316,859 - Psyr_1163 0.18 -0.3
1,316,859 - Psyr_1163 0.18 -0.9
1,316,859 - Psyr_1163 0.18 -1.4
1,317,269 - Psyr_1163 0.78 -1.0
1,317,531 - -1.6
1,317,933 + Psyr_1164 0.34 +0.8
1,317,933 + Psyr_1164 0.34 -0.2
1,318,133 + Psyr_1164 0.47 -0.5
1,318,330 + Psyr_1164 0.60 +0.2
1,318,330 + Psyr_1164 0.60 -0.2
1,318,331 - Psyr_1164 0.60 -0.1

Or see this region's nucleotide sequence