Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3322

Experiment: KB with Biochanin a diacetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3321 and Psyr_3322 are separated by 68 nucleotidesPsyr_3322 and Psyr_3323 are separated by 113 nucleotides Psyr_3321: Psyr_3321 - transcriptional regulator, LysR family, at 3,972,243 to 3,973,178 _3321 Psyr_3322: Psyr_3322 - Major facilitator superfamily, at 3,973,247 to 3,974,473 _3322 Psyr_3323: Psyr_3323 - conserved hypothetical protein, at 3,974,587 to 3,975,678 _3323 Position (kb) 3973 3974 3975Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3972.835 kb on - strand, within Psyr_3321at 3972.850 kb on + strand, within Psyr_3321at 3973.052 kb on - strand, within Psyr_3321at 3973.114 kb on + strandat 3973.115 kb on - strandat 3973.115 kb on - strandat 3973.166 kb on + strandat 3973.166 kb on + strandat 3973.167 kb on - strandat 3973.172 kb on + strandat 3973.231 kb on + strandat 3973.771 kb on - strand, within Psyr_3322at 3973.801 kb on + strand, within Psyr_3322at 3973.801 kb on + strand, within Psyr_3322at 3973.802 kb on - strand, within Psyr_3322at 3973.803 kb on + strand, within Psyr_3322at 3973.804 kb on - strand, within Psyr_3322at 3973.804 kb on - strand, within Psyr_3322at 3973.804 kb on - strand, within Psyr_3322at 3974.042 kb on - strand, within Psyr_3322at 3974.055 kb on + strand, within Psyr_3322at 3974.055 kb on + strand, within Psyr_3322at 3974.055 kb on + strand, within Psyr_3322at 3974.056 kb on - strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.068 kb on - strand, within Psyr_3322at 3974.068 kb on - strand, within Psyr_3322at 3974.244 kb on + strand, within Psyr_3322at 3974.504 kb on + strandat 3974.505 kb on - strandat 3974.551 kb on - strandat 3974.554 kb on + strandat 3974.554 kb on + strandat 3974.705 kb on + strand, within Psyr_3323at 3974.705 kb on + strand, within Psyr_3323at 3974.705 kb on + strand, within Psyr_3323at 3974.705 kb on + strand, within Psyr_3323at 3974.705 kb on + strand, within Psyr_3323at 3974.705 kb on + strand, within Psyr_3323at 3974.706 kb on - strand, within Psyr_3323at 3974.706 kb on - strand, within Psyr_3323at 3974.706 kb on - strand, within Psyr_3323at 3974.913 kb on - strand, within Psyr_3323at 3975.189 kb on + strand, within Psyr_3323at 3975.269 kb on + strand, within Psyr_3323at 3975.270 kb on - strand, within Psyr_3323

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Biochanin a diacetate 10 mM
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3,972,835 - Psyr_3321 0.63 +0.8
3,972,850 + Psyr_3321 0.65 -0.5
3,973,052 - Psyr_3321 0.86 +1.7
3,973,114 + -0.4
3,973,115 - -0.0
3,973,115 - +0.6
3,973,166 + +0.5
3,973,166 + -0.8
3,973,167 - +1.1
3,973,172 + +0.5
3,973,231 + +0.4
3,973,771 - Psyr_3322 0.43 +0.8
3,973,801 + Psyr_3322 0.45 -0.9
3,973,801 + Psyr_3322 0.45 +0.1
3,973,802 - Psyr_3322 0.45 -1.2
3,973,803 + Psyr_3322 0.45 +3.1
3,973,804 - Psyr_3322 0.45 -0.3
3,973,804 - Psyr_3322 0.45 -0.5
3,973,804 - Psyr_3322 0.45 +0.5
3,974,042 - Psyr_3322 0.65 -0.3
3,974,055 + Psyr_3322 0.66 +1.3
3,974,055 + Psyr_3322 0.66 +0.7
3,974,055 + Psyr_3322 0.66 +1.0
3,974,056 - Psyr_3322 0.66 -1.9
3,974,067 + Psyr_3322 0.67 -1.6
3,974,067 + Psyr_3322 0.67 -0.8
3,974,067 + Psyr_3322 0.67 +0.5
3,974,067 + Psyr_3322 0.67 +2.7
3,974,067 + Psyr_3322 0.67 +0.0
3,974,067 + Psyr_3322 0.67 -0.4
3,974,067 + Psyr_3322 0.67 +0.1
3,974,068 - Psyr_3322 0.67 +0.8
3,974,068 - Psyr_3322 0.67 +0.1
3,974,244 + Psyr_3322 0.81 -0.7
3,974,504 + +0.5
3,974,505 - +0.6
3,974,551 - -1.7
3,974,554 + -0.3
3,974,554 + +0.1
3,974,705 + Psyr_3323 0.11 +0.0
3,974,705 + Psyr_3323 0.11 -0.4
3,974,705 + Psyr_3323 0.11 +0.2
3,974,705 + Psyr_3323 0.11 -0.5
3,974,705 + Psyr_3323 0.11 -2.1
3,974,705 + Psyr_3323 0.11 -0.6
3,974,706 - Psyr_3323 0.11 -0.1
3,974,706 - Psyr_3323 0.11 -1.6
3,974,706 - Psyr_3323 0.11 -0.6
3,974,913 - Psyr_3323 0.30 +0.4
3,975,189 + Psyr_3323 0.55 -0.1
3,975,269 + Psyr_3323 0.62 -1.7
3,975,270 - Psyr_3323 0.63 +0.7

Or see this region's nucleotide sequence