Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2537

Experiment: KB with Biochanin a diacetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2536 and Psyr_2537 are separated by 318 nucleotidesPsyr_2537 and Psyr_2538 overlap by 4 nucleotidesPsyr_2538 and Psyr_2539 overlap by 4 nucleotides Psyr_2536: Psyr_2536 - transcriptional regulator, LysR family, at 2,950,688 to 2,951,677 _2536 Psyr_2537: Psyr_2537 - conserved hypothetical protein, at 2,951,996 to 2,953,456 _2537 Psyr_2538: Psyr_2538 - Binding-protein-dependent transport systems inner membrane component, at 2,953,453 to 2,954,427 _2538 Psyr_2539: Psyr_2539 - Binding-protein-dependent transport systems inner membrane component, at 2,954,424 to 2,955,344 _2539 Position (kb) 2951 2952 2953 2954Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2951.392 kb on + strand, within Psyr_2536at 2951.393 kb on - strand, within Psyr_2536at 2951.393 kb on - strand, within Psyr_2536at 2951.393 kb on - strand, within Psyr_2536at 2951.655 kb on + strandat 2951.656 kb on - strandat 2951.656 kb on - strandat 2951.675 kb on + strandat 2951.676 kb on - strandat 2951.690 kb on + strandat 2951.690 kb on + strandat 2951.768 kb on + strandat 2951.800 kb on - strandat 2951.829 kb on + strandat 2952.333 kb on - strand, within Psyr_2537at 2952.438 kb on + strand, within Psyr_2537at 2952.439 kb on - strand, within Psyr_2537at 2952.454 kb on + strand, within Psyr_2537at 2952.455 kb on - strand, within Psyr_2537at 2952.824 kb on + strand, within Psyr_2537at 2953.265 kb on + strand, within Psyr_2537at 2953.266 kb on - strand, within Psyr_2537at 2953.266 kb on - strand, within Psyr_2537at 2953.642 kb on + strand, within Psyr_2538at 2953.642 kb on + strand, within Psyr_2538at 2953.642 kb on + strand, within Psyr_2538at 2954.018 kb on + strand, within Psyr_2538at 2954.326 kb on + strand, within Psyr_2538at 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.383 kb on + strandat 2954.384 kb on - strandat 2954.384 kb on - strandat 2954.386 kb on + strandat 2954.387 kb on - strandat 2954.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Biochanin a diacetate 10 mM
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2,951,392 + Psyr_2536 0.71 +0.0
2,951,393 - Psyr_2536 0.71 -0.1
2,951,393 - Psyr_2536 0.71 +0.7
2,951,393 - Psyr_2536 0.71 +0.0
2,951,655 + +0.8
2,951,656 - +2.1
2,951,656 - +0.1
2,951,675 + +0.2
2,951,676 - -2.2
2,951,690 + +0.1
2,951,690 + +0.1
2,951,768 + -0.8
2,951,800 - -1.6
2,951,829 + -0.5
2,952,333 - Psyr_2537 0.23 +0.1
2,952,438 + Psyr_2537 0.30 +3.8
2,952,439 - Psyr_2537 0.30 +1.2
2,952,454 + Psyr_2537 0.31 +0.8
2,952,455 - Psyr_2537 0.31 -0.8
2,952,824 + Psyr_2537 0.57 -1.0
2,953,265 + Psyr_2537 0.87 +1.4
2,953,266 - Psyr_2537 0.87 -1.0
2,953,266 - Psyr_2537 0.87 +0.7
2,953,642 + Psyr_2538 0.19 +0.5
2,953,642 + Psyr_2538 0.19 -1.4
2,953,642 + Psyr_2538 0.19 -0.0
2,954,018 + Psyr_2538 0.58 +1.2
2,954,326 + Psyr_2538 0.90 -1.2
2,954,383 + -0.4
2,954,383 + -0.1
2,954,383 + +0.1
2,954,383 + +1.4
2,954,384 - +0.8
2,954,384 - -0.7
2,954,386 + -0.9
2,954,387 - -0.4
2,954,406 - -0.8

Or see this region's nucleotide sequence