Experiment: KB with Biochanin a diacetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1985 and Psyr_1986 are separated by 70 nucleotides Psyr_1986 and Psyr_1987 are separated by 180 nucleotides
Psyr_1985: Psyr_1985 - 3-isopropylmalate dehydrogenase, at 2,304,956 to 2,306,038
_1985
Psyr_1986: Psyr_1986 - aspartate semialdehyde dehydrogenase, at 2,306,109 to 2,307,221
_1986
Psyr_1987: Psyr_1987 - 2-keto-3-deoxygalactonate kinase, at 2,307,402 to 2,308,406
_1987
Position (kb)
2306
2307
2308 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2305.376 kb on + strand, within Psyr_1985 at 2305.376 kb on + strand, within Psyr_1985 at 2305.376 kb on + strand, within Psyr_1985 at 2305.377 kb on - strand, within Psyr_1985 at 2305.377 kb on - strand, within Psyr_1985 at 2305.377 kb on - strand, within Psyr_1985 at 2305.431 kb on - strand, within Psyr_1985 at 2305.445 kb on + strand, within Psyr_1985 at 2305.619 kb on + strand, within Psyr_1985 at 2305.619 kb on + strand, within Psyr_1985 at 2305.619 kb on + strand, within Psyr_1985 at 2305.619 kb on + strand, within Psyr_1985 at 2305.619 kb on + strand, within Psyr_1985 at 2305.619 kb on + strand, within Psyr_1985 at 2305.619 kb on + strand, within Psyr_1985 at 2305.619 kb on + strand, within Psyr_1985 at 2305.619 kb on + strand, within Psyr_1985 at 2305.620 kb on - strand, within Psyr_1985 at 2305.620 kb on - strand, within Psyr_1985 at 2305.620 kb on - strand, within Psyr_1985 at 2305.620 kb on - strand, within Psyr_1985 at 2305.620 kb on - strand, within Psyr_1985 at 2305.620 kb on - strand, within Psyr_1985 at 2305.620 kb on - strand, within Psyr_1985 at 2305.784 kb on + strand, within Psyr_1985 at 2305.784 kb on + strand, within Psyr_1985 at 2305.784 kb on + strand, within Psyr_1985 at 2305.785 kb on - strand, within Psyr_1985 at 2305.785 kb on - strand, within Psyr_1985 at 2307.281 kb on + strand at 2307.308 kb on + strand at 2307.358 kb on - strand at 2307.358 kb on - strand at 2307.359 kb on + strand at 2307.479 kb on - strand at 2307.911 kb on - strand, within Psyr_1987 at 2308.092 kb on - strand, within Psyr_1987 at 2308.152 kb on + strand, within Psyr_1987 at 2308.153 kb on - strand, within Psyr_1987 at 2308.153 kb on - strand, within Psyr_1987
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Biochanin a diacetate 10 mM remove 2,305,376 + Psyr_1985 0.39 -0.2 2,305,376 + Psyr_1985 0.39 -0.3 2,305,376 + Psyr_1985 0.39 -0.5 2,305,377 - Psyr_1985 0.39 +3.5 2,305,377 - Psyr_1985 0.39 -0.0 2,305,377 - Psyr_1985 0.39 +0.2 2,305,431 - Psyr_1985 0.44 -0.5 2,305,445 + Psyr_1985 0.45 +0.9 2,305,619 + Psyr_1985 0.61 +1.3 2,305,619 + Psyr_1985 0.61 +0.4 2,305,619 + Psyr_1985 0.61 -0.0 2,305,619 + Psyr_1985 0.61 -0.0 2,305,619 + Psyr_1985 0.61 +2.8 2,305,619 + Psyr_1985 0.61 +0.5 2,305,619 + Psyr_1985 0.61 +0.1 2,305,619 + Psyr_1985 0.61 +0.6 2,305,619 + Psyr_1985 0.61 +1.5 2,305,620 - Psyr_1985 0.61 -0.4 2,305,620 - Psyr_1985 0.61 +1.5 2,305,620 - Psyr_1985 0.61 +0.8 2,305,620 - Psyr_1985 0.61 -0.1 2,305,620 - Psyr_1985 0.61 -1.4 2,305,620 - Psyr_1985 0.61 +1.1 2,305,620 - Psyr_1985 0.61 -1.1 2,305,784 + Psyr_1985 0.76 +0.5 2,305,784 + Psyr_1985 0.76 -0.6 2,305,784 + Psyr_1985 0.76 -0.4 2,305,785 - Psyr_1985 0.77 +0.1 2,305,785 - Psyr_1985 0.77 +0.1 2,307,281 + +0.2 2,307,308 + -0.3 2,307,358 - -0.8 2,307,358 - +0.0 2,307,359 + +0.0 2,307,479 - -0.9 2,307,911 - Psyr_1987 0.51 +0.3 2,308,092 - Psyr_1987 0.69 +0.2 2,308,152 + Psyr_1987 0.75 -0.6 2,308,153 - Psyr_1987 0.75 +3.1 2,308,153 - Psyr_1987 0.75 +0.7
Or see this region's nucleotide sequence