Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1986

Experiment: KB with Biochanin a diacetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1985 and Psyr_1986 are separated by 70 nucleotidesPsyr_1986 and Psyr_1987 are separated by 180 nucleotides Psyr_1985: Psyr_1985 - 3-isopropylmalate dehydrogenase, at 2,304,956 to 2,306,038 _1985 Psyr_1986: Psyr_1986 - aspartate semialdehyde dehydrogenase, at 2,306,109 to 2,307,221 _1986 Psyr_1987: Psyr_1987 - 2-keto-3-deoxygalactonate kinase, at 2,307,402 to 2,308,406 _1987 Position (kb) 2306 2307 2308Strain fitness (log2 ratio) -1 0 1 2 3at 2305.376 kb on + strand, within Psyr_1985at 2305.376 kb on + strand, within Psyr_1985at 2305.376 kb on + strand, within Psyr_1985at 2305.377 kb on - strand, within Psyr_1985at 2305.377 kb on - strand, within Psyr_1985at 2305.377 kb on - strand, within Psyr_1985at 2305.431 kb on - strand, within Psyr_1985at 2305.445 kb on + strand, within Psyr_1985at 2305.619 kb on + strand, within Psyr_1985at 2305.619 kb on + strand, within Psyr_1985at 2305.619 kb on + strand, within Psyr_1985at 2305.619 kb on + strand, within Psyr_1985at 2305.619 kb on + strand, within Psyr_1985at 2305.619 kb on + strand, within Psyr_1985at 2305.619 kb on + strand, within Psyr_1985at 2305.619 kb on + strand, within Psyr_1985at 2305.619 kb on + strand, within Psyr_1985at 2305.620 kb on - strand, within Psyr_1985at 2305.620 kb on - strand, within Psyr_1985at 2305.620 kb on - strand, within Psyr_1985at 2305.620 kb on - strand, within Psyr_1985at 2305.620 kb on - strand, within Psyr_1985at 2305.620 kb on - strand, within Psyr_1985at 2305.620 kb on - strand, within Psyr_1985at 2305.784 kb on + strand, within Psyr_1985at 2305.784 kb on + strand, within Psyr_1985at 2305.784 kb on + strand, within Psyr_1985at 2305.785 kb on - strand, within Psyr_1985at 2305.785 kb on - strand, within Psyr_1985at 2307.281 kb on + strandat 2307.308 kb on + strandat 2307.358 kb on - strandat 2307.358 kb on - strandat 2307.359 kb on + strandat 2307.479 kb on - strandat 2307.911 kb on - strand, within Psyr_1987at 2308.092 kb on - strand, within Psyr_1987at 2308.152 kb on + strand, within Psyr_1987at 2308.153 kb on - strand, within Psyr_1987at 2308.153 kb on - strand, within Psyr_1987

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Biochanin a diacetate 10 mM
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2,305,376 + Psyr_1985 0.39 -0.2
2,305,376 + Psyr_1985 0.39 -0.3
2,305,376 + Psyr_1985 0.39 -0.5
2,305,377 - Psyr_1985 0.39 +3.5
2,305,377 - Psyr_1985 0.39 -0.0
2,305,377 - Psyr_1985 0.39 +0.2
2,305,431 - Psyr_1985 0.44 -0.5
2,305,445 + Psyr_1985 0.45 +0.9
2,305,619 + Psyr_1985 0.61 +1.3
2,305,619 + Psyr_1985 0.61 +0.4
2,305,619 + Psyr_1985 0.61 -0.0
2,305,619 + Psyr_1985 0.61 -0.0
2,305,619 + Psyr_1985 0.61 +2.8
2,305,619 + Psyr_1985 0.61 +0.5
2,305,619 + Psyr_1985 0.61 +0.1
2,305,619 + Psyr_1985 0.61 +0.6
2,305,619 + Psyr_1985 0.61 +1.5
2,305,620 - Psyr_1985 0.61 -0.4
2,305,620 - Psyr_1985 0.61 +1.5
2,305,620 - Psyr_1985 0.61 +0.8
2,305,620 - Psyr_1985 0.61 -0.1
2,305,620 - Psyr_1985 0.61 -1.4
2,305,620 - Psyr_1985 0.61 +1.1
2,305,620 - Psyr_1985 0.61 -1.1
2,305,784 + Psyr_1985 0.76 +0.5
2,305,784 + Psyr_1985 0.76 -0.6
2,305,784 + Psyr_1985 0.76 -0.4
2,305,785 - Psyr_1985 0.77 +0.1
2,305,785 - Psyr_1985 0.77 +0.1
2,307,281 + +0.2
2,307,308 + -0.3
2,307,358 - -0.8
2,307,358 - +0.0
2,307,359 + +0.0
2,307,479 - -0.9
2,307,911 - Psyr_1987 0.51 +0.3
2,308,092 - Psyr_1987 0.69 +0.2
2,308,152 + Psyr_1987 0.75 -0.6
2,308,153 - Psyr_1987 0.75 +3.1
2,308,153 - Psyr_1987 0.75 +0.7

Or see this region's nucleotide sequence