Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4989

Experiment: KB with Hydrastine (1R, 9S) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4988 and Psyr_4989 overlap by 13 nucleotidesPsyr_4989 and Psyr_4990 are separated by 246 nucleotides Psyr_4988: Psyr_4988 - YD repeat protein, at 5,916,253 to 5,917,695 _4988 Psyr_4989: Psyr_4989 - hypothetical protein, at 5,917,683 to 5,918,153 _4989 Psyr_4990: Psyr_4990 - YD repeat protein, at 5,918,400 to 5,921,003 _4990 Position (kb) 5917 5918 5919Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5916.778 kb on + strand, within Psyr_4988at 5916.858 kb on + strand, within Psyr_4988at 5917.037 kb on + strand, within Psyr_4988at 5917.228 kb on + strand, within Psyr_4988at 5917.272 kb on + strand, within Psyr_4988at 5917.318 kb on + strand, within Psyr_4988at 5917.318 kb on + strand, within Psyr_4988at 5917.318 kb on + strand, within Psyr_4988at 5917.318 kb on + strand, within Psyr_4988at 5917.318 kb on + strand, within Psyr_4988at 5917.319 kb on - strand, within Psyr_4988at 5917.319 kb on - strand, within Psyr_4988at 5917.319 kb on - strand, within Psyr_4988at 5917.319 kb on - strand, within Psyr_4988at 5917.380 kb on + strand, within Psyr_4988at 5917.423 kb on + strand, within Psyr_4988at 5917.424 kb on - strand, within Psyr_4988at 5917.424 kb on - strand, within Psyr_4988at 5917.488 kb on - strand, within Psyr_4988at 5917.516 kb on - strand, within Psyr_4988at 5917.542 kb on + strand, within Psyr_4988at 5917.548 kb on + strand, within Psyr_4988at 5917.548 kb on + strand, within Psyr_4988at 5917.549 kb on - strand, within Psyr_4988at 5917.550 kb on + strand, within Psyr_4988at 5917.550 kb on + strand, within Psyr_4988at 5917.550 kb on + strand, within Psyr_4988at 5917.550 kb on + strand, within Psyr_4988at 5917.550 kb on + strand, within Psyr_4988at 5917.551 kb on - strandat 5917.551 kb on - strandat 5917.551 kb on - strandat 5917.577 kb on + strandat 5917.577 kb on + strandat 5917.577 kb on + strandat 5917.577 kb on + strandat 5917.578 kb on - strandat 5917.578 kb on - strandat 5917.578 kb on - strandat 5917.650 kb on + strandat 5917.651 kb on - strandat 5917.651 kb on - strandat 5917.659 kb on - strandat 5917.659 kb on - strandat 5917.659 kb on - strandat 5917.662 kb on + strandat 5917.663 kb on - strandat 5917.737 kb on + strand, within Psyr_4989at 5917.738 kb on - strand, within Psyr_4989at 5917.738 kb on - strand, within Psyr_4989at 5917.766 kb on + strand, within Psyr_4989at 5917.766 kb on + strand, within Psyr_4989at 5917.824 kb on - strand, within Psyr_4989at 5917.855 kb on + strand, within Psyr_4989at 5917.900 kb on + strand, within Psyr_4989at 5917.906 kb on + strand, within Psyr_4989at 5917.906 kb on + strand, within Psyr_4989at 5917.985 kb on - strand, within Psyr_4989at 5918.024 kb on - strand, within Psyr_4989at 5918.126 kb on - strandat 5918.287 kb on + strandat 5918.287 kb on + strandat 5918.288 kb on - strandat 5918.291 kb on + strandat 5918.359 kb on + strandat 5918.359 kb on + strandat 5918.361 kb on + strandat 5918.362 kb on - strandat 5918.375 kb on + strandat 5918.411 kb on + strandat 5918.412 kb on - strandat 5918.487 kb on + strandat 5918.487 kb on + strandat 5918.487 kb on + strandat 5918.487 kb on + strandat 5918.487 kb on + strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.488 kb on - strandat 5918.559 kb on + strandat 5918.676 kb on + strand, within Psyr_4990at 5918.676 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.739 kb on + strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.740 kb on - strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.874 kb on + strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.875 kb on - strand, within Psyr_4990at 5918.923 kb on + strand, within Psyr_4990at 5918.923 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.051 kb on + strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990at 5919.052 kb on - strand, within Psyr_4990

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM
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5,916,778 + Psyr_4988 0.36 -1.1
5,916,858 + Psyr_4988 0.42 +1.0
5,917,037 + Psyr_4988 0.54 +0.9
5,917,228 + Psyr_4988 0.68 +0.4
5,917,272 + Psyr_4988 0.71 -0.4
5,917,318 + Psyr_4988 0.74 +2.9
5,917,318 + Psyr_4988 0.74 +0.0
5,917,318 + Psyr_4988 0.74 -0.4
5,917,318 + Psyr_4988 0.74 +0.9
5,917,318 + Psyr_4988 0.74 -0.2
5,917,319 - Psyr_4988 0.74 -1.5
5,917,319 - Psyr_4988 0.74 -0.4
5,917,319 - Psyr_4988 0.74 -0.0
5,917,319 - Psyr_4988 0.74 -0.2
5,917,380 + Psyr_4988 0.78 -1.2
5,917,423 + Psyr_4988 0.81 -0.2
5,917,424 - Psyr_4988 0.81 -1.1
5,917,424 - Psyr_4988 0.81 -0.4
5,917,488 - Psyr_4988 0.86 -2.8
5,917,516 - Psyr_4988 0.88 -0.8
5,917,542 + Psyr_4988 0.89 -0.1
5,917,548 + Psyr_4988 0.90 +0.2
5,917,548 + Psyr_4988 0.90 +2.1
5,917,549 - Psyr_4988 0.90 +1.4
5,917,550 + Psyr_4988 0.90 +0.3
5,917,550 + Psyr_4988 0.90 +1.2
5,917,550 + Psyr_4988 0.90 -1.9
5,917,550 + Psyr_4988 0.90 -0.8
5,917,550 + Psyr_4988 0.90 +0.1
5,917,551 - -0.7
5,917,551 - -1.6
5,917,551 - -0.6
5,917,577 + +1.4
5,917,577 + +2.4
5,917,577 + +0.1
5,917,577 + +1.8
5,917,578 - -0.3
5,917,578 - -1.2
5,917,578 - -0.6
5,917,650 + +0.5
5,917,651 - -0.2
5,917,651 - -1.9
5,917,659 - +0.4
5,917,659 - -0.6
5,917,659 - -2.7
5,917,662 + -1.6
5,917,663 - +0.7
5,917,737 + Psyr_4989 0.11 -0.8
5,917,738 - Psyr_4989 0.12 -2.5
5,917,738 - Psyr_4989 0.12 -1.2
5,917,766 + Psyr_4989 0.18 -1.3
5,917,766 + Psyr_4989 0.18 +2.1
5,917,824 - Psyr_4989 0.30 -1.0
5,917,855 + Psyr_4989 0.37 +0.3
5,917,900 + Psyr_4989 0.46 -0.6
5,917,906 + Psyr_4989 0.47 -2.2
5,917,906 + Psyr_4989 0.47 -0.0
5,917,985 - Psyr_4989 0.64 -2.9
5,918,024 - Psyr_4989 0.72 -0.4
5,918,126 - +0.2
5,918,287 + -1.9
5,918,287 + -0.4
5,918,288 - -2.0
5,918,291 + -0.8
5,918,359 + +0.2
5,918,359 + +1.0
5,918,361 + +1.4
5,918,362 - -1.8
5,918,375 + +0.3
5,918,411 + -0.6
5,918,412 - +0.1
5,918,487 + +1.0
5,918,487 + -0.9
5,918,487 + -1.4
5,918,487 + +0.5
5,918,487 + +1.0
5,918,488 - +2.4
5,918,488 - +1.9
5,918,488 - -0.3
5,918,559 + -0.1
5,918,676 + Psyr_4990 0.11 -1.5
5,918,676 + Psyr_4990 0.11 +0.9
5,918,739 + Psyr_4990 0.13 +1.4
5,918,739 + Psyr_4990 0.13 -0.3
5,918,739 + Psyr_4990 0.13 -0.7
5,918,739 + Psyr_4990 0.13 +0.4
5,918,739 + Psyr_4990 0.13 -0.4
5,918,739 + Psyr_4990 0.13 -1.0
5,918,739 + Psyr_4990 0.13 -0.6
5,918,739 + Psyr_4990 0.13 +0.6
5,918,739 + Psyr_4990 0.13 +0.2
5,918,740 - Psyr_4990 0.13 +0.5
5,918,740 - Psyr_4990 0.13 +0.1
5,918,740 - Psyr_4990 0.13 -1.0
5,918,740 - Psyr_4990 0.13 -0.0
5,918,740 - Psyr_4990 0.13 -1.3
5,918,874 + Psyr_4990 0.18 -2.0
5,918,874 + Psyr_4990 0.18 -1.1
5,918,874 + Psyr_4990 0.18 +0.5
5,918,874 + Psyr_4990 0.18 +1.6
5,918,874 + Psyr_4990 0.18 -1.1
5,918,874 + Psyr_4990 0.18 +0.7
5,918,874 + Psyr_4990 0.18 +0.1
5,918,874 + Psyr_4990 0.18 -2.1
5,918,874 + Psyr_4990 0.18 -0.2
5,918,875 - Psyr_4990 0.18 -0.9
5,918,875 - Psyr_4990 0.18 +0.8
5,918,875 - Psyr_4990 0.18 -0.1
5,918,875 - Psyr_4990 0.18 +0.3
5,918,875 - Psyr_4990 0.18 -1.2
5,918,875 - Psyr_4990 0.18 +0.8
5,918,875 - Psyr_4990 0.18 -0.4
5,918,875 - Psyr_4990 0.18 +0.9
5,918,923 + Psyr_4990 0.20 -0.7
5,918,923 + Psyr_4990 0.20 -1.0
5,919,051 + Psyr_4990 0.25 -0.0
5,919,051 + Psyr_4990 0.25 -0.4
5,919,051 + Psyr_4990 0.25 +0.6
5,919,051 + Psyr_4990 0.25 -0.2
5,919,051 + Psyr_4990 0.25 -0.5
5,919,051 + Psyr_4990 0.25 -0.6
5,919,052 - Psyr_4990 0.25 +0.8
5,919,052 - Psyr_4990 0.25 +3.4
5,919,052 - Psyr_4990 0.25 +0.9
5,919,052 - Psyr_4990 0.25 -0.0
5,919,052 - Psyr_4990 0.25 +1.4
5,919,052 - Psyr_4990 0.25 +1.0
5,919,052 - Psyr_4990 0.25 +0.8
5,919,052 - Psyr_4990 0.25 +0.0
5,919,052 - Psyr_4990 0.25 +0.3
5,919,052 - Psyr_4990 0.25 -1.4

Or see this region's nucleotide sequence