Experiment: KB with Hydrastine (1R, 9S) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4502 and Psyr_4503 overlap by 4 nucleotides Psyr_4503 and Psyr_4504 overlap by 4 nucleotides Psyr_4504 and Psyr_4505 overlap by 4 nucleotides
Psyr_4502: Psyr_4502 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 5,366,138 to 5,367,457
_4502
Psyr_4503: Psyr_4503 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 5,367,454 to 5,368,347
_4503
Psyr_4504: Psyr_4504 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 5,368,344 to 5,369,237
_4504
Psyr_4505: Psyr_4505 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 5,369,234 to 5,370,340
_4505
Position (kb) 5367
5368
5369 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5366.481 kb on - strand, within Psyr_4502 at 5366.491 kb on + strand, within Psyr_4502 at 5366.491 kb on + strand, within Psyr_4502 at 5366.491 kb on + strand, within Psyr_4502 at 5366.516 kb on + strand, within Psyr_4502 at 5366.516 kb on + strand, within Psyr_4502 at 5366.519 kb on + strand, within Psyr_4502 at 5366.520 kb on - strand, within Psyr_4502 at 5366.579 kb on + strand, within Psyr_4502 at 5366.580 kb on - strand, within Psyr_4502 at 5366.580 kb on - strand, within Psyr_4502 at 5366.581 kb on + strand, within Psyr_4502 at 5366.581 kb on + strand, within Psyr_4502 at 5366.582 kb on - strand, within Psyr_4502 at 5366.582 kb on - strand, within Psyr_4502 at 5366.582 kb on - strand, within Psyr_4502 at 5366.582 kb on - strand, within Psyr_4502 at 5366.582 kb on - strand, within Psyr_4502 at 5366.952 kb on + strand, within Psyr_4502 at 5366.952 kb on + strand, within Psyr_4502 at 5366.953 kb on - strand, within Psyr_4502 at 5366.953 kb on - strand, within Psyr_4502 at 5366.953 kb on - strand, within Psyr_4502 at 5366.953 kb on - strand, within Psyr_4502 at 5366.953 kb on - strand, within Psyr_4502 at 5366.953 kb on - strand, within Psyr_4502 at 5366.953 kb on - strand, within Psyr_4502 at 5366.953 kb on - strand, within Psyr_4502 at 5367.133 kb on - strand, within Psyr_4502 at 5367.283 kb on + strand, within Psyr_4502 at 5367.625 kb on + strand, within Psyr_4503 at 5367.626 kb on - strand, within Psyr_4503 at 5367.943 kb on + strand, within Psyr_4503 at 5367.944 kb on - strand, within Psyr_4503 at 5368.012 kb on + strand, within Psyr_4503 at 5368.013 kb on - strand, within Psyr_4503 at 5368.067 kb on + strand, within Psyr_4503 at 5368.067 kb on + strand, within Psyr_4503 at 5368.067 kb on + strand, within Psyr_4503 at 5368.067 kb on + strand, within Psyr_4503 at 5368.067 kb on + strand, within Psyr_4503 at 5368.067 kb on + strand, within Psyr_4503 at 5368.067 kb on + strand, within Psyr_4503 at 5368.067 kb on + strand, within Psyr_4503 at 5368.067 kb on + strand, within Psyr_4503 at 5368.068 kb on - strand, within Psyr_4503 at 5368.068 kb on - strand, within Psyr_4503 at 5368.068 kb on - strand, within Psyr_4503 at 5368.068 kb on - strand, within Psyr_4503 at 5368.068 kb on - strand, within Psyr_4503 at 5368.068 kb on - strand, within Psyr_4503 at 5368.068 kb on - strand, within Psyr_4503 at 5368.068 kb on - strand, within Psyr_4503 at 5368.068 kb on - strand, within Psyr_4503 at 5368.068 kb on - strand, within Psyr_4503 at 5368.068 kb on - strand, within Psyr_4503 at 5368.090 kb on + strand, within Psyr_4503 at 5368.090 kb on + strand, within Psyr_4503 at 5368.091 kb on - strand, within Psyr_4503 at 5368.182 kb on + strand, within Psyr_4503 at 5368.185 kb on + strand, within Psyr_4503 at 5368.185 kb on + strand, within Psyr_4503 at 5368.185 kb on + strand, within Psyr_4503 at 5368.185 kb on + strand, within Psyr_4503 at 5368.201 kb on + strand, within Psyr_4503 at 5368.202 kb on - strand, within Psyr_4503 at 5368.210 kb on + strand, within Psyr_4503 at 5368.380 kb on + strand at 5368.380 kb on + strand at 5368.381 kb on - strand at 5368.425 kb on + strand at 5368.425 kb on + strand at 5368.425 kb on + strand at 5368.425 kb on + strand at 5368.425 kb on + strand at 5368.425 kb on + strand at 5368.425 kb on + strand at 5368.425 kb on + strand at 5368.425 kb on + strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.426 kb on - strand at 5368.429 kb on + strand at 5368.430 kb on - strand at 5368.430 kb on - strand at 5368.430 kb on - strand at 5368.636 kb on - strand, within Psyr_4504 at 5368.636 kb on - strand, within Psyr_4504 at 5368.705 kb on + strand, within Psyr_4504 at 5368.705 kb on + strand, within Psyr_4504 at 5368.706 kb on - strand, within Psyr_4504 at 5368.722 kb on + strand, within Psyr_4504 at 5368.722 kb on + strand, within Psyr_4504 at 5368.722 kb on + strand, within Psyr_4504 at 5368.722 kb on + strand, within Psyr_4504 at 5368.722 kb on + strand, within Psyr_4504 at 5368.722 kb on + strand, within Psyr_4504 at 5368.722 kb on + strand, within Psyr_4504 at 5368.722 kb on + strand, within Psyr_4504 at 5368.722 kb on + strand, within Psyr_4504 at 5368.723 kb on - strand, within Psyr_4504 at 5368.723 kb on - strand, within Psyr_4504 at 5368.723 kb on - strand, within Psyr_4504 at 5368.723 kb on - strand, within Psyr_4504 at 5368.723 kb on - strand, within Psyr_4504 at 5368.723 kb on - strand, within Psyr_4504 at 5368.723 kb on - strand, within Psyr_4504 at 5368.723 kb on - strand, within Psyr_4504 at 5368.821 kb on + strand, within Psyr_4504 at 5368.884 kb on + strand, within Psyr_4504 at 5368.884 kb on + strand, within Psyr_4504 at 5368.885 kb on - strand, within Psyr_4504 at 5369.031 kb on + strand, within Psyr_4504 at 5369.032 kb on - strand, within Psyr_4504 at 5369.032 kb on - strand, within Psyr_4504 at 5369.032 kb on - strand, within Psyr_4504 at 5369.032 kb on - strand, within Psyr_4504 at 5369.232 kb on - strand at 5369.252 kb on - strand at 5369.252 kb on - strand at 5369.252 kb on - strand at 5369.254 kb on + strand at 5369.254 kb on + strand at 5369.254 kb on + strand at 5369.254 kb on + strand at 5369.255 kb on - strand at 5369.255 kb on - strand at 5369.255 kb on - strand at 5369.255 kb on - strand at 5369.270 kb on - strand at 5369.273 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM remove 5,366,481 - Psyr_4502 0.26 -1.2 5,366,491 + Psyr_4502 0.27 +0.1 5,366,491 + Psyr_4502 0.27 +0.7 5,366,491 + Psyr_4502 0.27 -0.5 5,366,516 + Psyr_4502 0.29 -1.9 5,366,516 + Psyr_4502 0.29 +0.2 5,366,519 + Psyr_4502 0.29 +3.3 5,366,520 - Psyr_4502 0.29 +2.3 5,366,579 + Psyr_4502 0.33 +0.1 5,366,580 - Psyr_4502 0.33 +0.8 5,366,580 - Psyr_4502 0.33 -0.9 5,366,581 + Psyr_4502 0.34 +1.4 5,366,581 + Psyr_4502 0.34 -1.0 5,366,582 - Psyr_4502 0.34 +1.3 5,366,582 - Psyr_4502 0.34 -0.1 5,366,582 - Psyr_4502 0.34 -0.1 5,366,582 - Psyr_4502 0.34 +3.7 5,366,582 - Psyr_4502 0.34 +0.1 5,366,952 + Psyr_4502 0.62 -1.6 5,366,952 + Psyr_4502 0.62 +0.2 5,366,953 - Psyr_4502 0.62 +0.6 5,366,953 - Psyr_4502 0.62 +0.3 5,366,953 - Psyr_4502 0.62 -0.5 5,366,953 - Psyr_4502 0.62 +0.8 5,366,953 - Psyr_4502 0.62 +0.6 5,366,953 - Psyr_4502 0.62 +0.3 5,366,953 - Psyr_4502 0.62 -0.2 5,366,953 - Psyr_4502 0.62 +0.2 5,367,133 - Psyr_4502 0.75 -2.6 5,367,283 + Psyr_4502 0.87 +0.3 5,367,625 + Psyr_4503 0.19 +0.4 5,367,626 - Psyr_4503 0.19 +0.6 5,367,943 + Psyr_4503 0.55 +3.8 5,367,944 - Psyr_4503 0.55 +0.1 5,368,012 + Psyr_4503 0.62 +1.3 5,368,013 - Psyr_4503 0.63 +0.7 5,368,067 + Psyr_4503 0.69 -0.7 5,368,067 + Psyr_4503 0.69 -0.6 5,368,067 + Psyr_4503 0.69 +1.5 5,368,067 + Psyr_4503 0.69 +1.7 5,368,067 + Psyr_4503 0.69 -0.4 5,368,067 + Psyr_4503 0.69 -0.7 5,368,067 + Psyr_4503 0.69 -0.4 5,368,067 + Psyr_4503 0.69 +2.8 5,368,067 + Psyr_4503 0.69 +0.1 5,368,068 - Psyr_4503 0.69 +0.6 5,368,068 - Psyr_4503 0.69 +0.2 5,368,068 - Psyr_4503 0.69 +0.3 5,368,068 - Psyr_4503 0.69 +0.5 5,368,068 - Psyr_4503 0.69 -0.4 5,368,068 - Psyr_4503 0.69 +0.6 5,368,068 - Psyr_4503 0.69 -0.1 5,368,068 - Psyr_4503 0.69 +1.1 5,368,068 - Psyr_4503 0.69 +0.9 5,368,068 - Psyr_4503 0.69 +0.4 5,368,068 - Psyr_4503 0.69 -0.7 5,368,090 + Psyr_4503 0.71 +1.3 5,368,090 + Psyr_4503 0.71 +1.4 5,368,091 - Psyr_4503 0.71 +0.7 5,368,182 + Psyr_4503 0.81 +0.1 5,368,185 + Psyr_4503 0.82 -1.0 5,368,185 + Psyr_4503 0.82 +0.4 5,368,185 + Psyr_4503 0.82 -1.0 5,368,185 + Psyr_4503 0.82 +0.6 5,368,201 + Psyr_4503 0.84 -1.6 5,368,202 - Psyr_4503 0.84 +1.3 5,368,210 + Psyr_4503 0.85 -1.1 5,368,380 + +0.3 5,368,380 + -1.3 5,368,381 - -1.7 5,368,425 + +0.1 5,368,425 + -0.3 5,368,425 + -0.2 5,368,425 + -0.1 5,368,425 + -0.8 5,368,425 + -0.1 5,368,425 + -0.2 5,368,425 + +0.5 5,368,425 + +0.5 5,368,426 - -0.7 5,368,426 - -1.0 5,368,426 - -1.1 5,368,426 - -0.0 5,368,426 - +2.3 5,368,426 - +0.1 5,368,426 - +3.3 5,368,426 - +0.3 5,368,426 - +0.3 5,368,426 - +0.3 5,368,426 - -0.4 5,368,426 - -0.3 5,368,426 - -0.4 5,368,429 + +0.4 5,368,430 - -0.4 5,368,430 - +0.2 5,368,430 - +5.2 5,368,636 - Psyr_4504 0.33 -0.1 5,368,636 - Psyr_4504 0.33 -0.9 5,368,705 + Psyr_4504 0.40 +0.6 5,368,705 + Psyr_4504 0.40 +0.7 5,368,706 - Psyr_4504 0.40 -0.4 5,368,722 + Psyr_4504 0.42 -0.1 5,368,722 + Psyr_4504 0.42 +0.6 5,368,722 + Psyr_4504 0.42 +0.2 5,368,722 + Psyr_4504 0.42 +2.0 5,368,722 + Psyr_4504 0.42 +0.9 5,368,722 + Psyr_4504 0.42 -0.2 5,368,722 + Psyr_4504 0.42 +0.3 5,368,722 + Psyr_4504 0.42 +0.0 5,368,722 + Psyr_4504 0.42 +1.0 5,368,723 - Psyr_4504 0.42 +0.5 5,368,723 - Psyr_4504 0.42 -0.6 5,368,723 - Psyr_4504 0.42 -0.4 5,368,723 - Psyr_4504 0.42 +0.2 5,368,723 - Psyr_4504 0.42 +2.3 5,368,723 - Psyr_4504 0.42 -1.4 5,368,723 - Psyr_4504 0.42 +0.3 5,368,723 - Psyr_4504 0.42 -0.6 5,368,821 + Psyr_4504 0.53 -0.0 5,368,884 + Psyr_4504 0.60 +1.2 5,368,884 + Psyr_4504 0.60 +0.6 5,368,885 - Psyr_4504 0.61 -0.6 5,369,031 + Psyr_4504 0.77 -0.6 5,369,032 - Psyr_4504 0.77 -0.0 5,369,032 - Psyr_4504 0.77 -0.6 5,369,032 - Psyr_4504 0.77 -1.2 5,369,032 - Psyr_4504 0.77 -1.2 5,369,232 - -1.5 5,369,252 - +0.9 5,369,252 - +0.1 5,369,252 - -0.4 5,369,254 + +0.5 5,369,254 + +1.6 5,369,254 + +1.0 5,369,254 + +0.1 5,369,255 - +0.4 5,369,255 - -2.1 5,369,255 - +0.0 5,369,255 - +1.8 5,369,270 - +0.3 5,369,273 - +0.9
Or see this region's nucleotide sequence