Experiment: KB with Hydrastine (1R, 9S) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3936 and Psyr_3937 are separated by 27 nucleotides Psyr_3937 and Psyr_3938 are separated by 76 nucleotides Psyr_3938 and Psyr_3939 are separated by 260 nucleotides
Psyr_3936: Psyr_3936 - General substrate transporter:Major facilitator superfamily, at 4,680,987 to 4,682,327
_3936
Psyr_3937: Psyr_3937 - Polysaccharide deacetylase, at 4,682,355 to 4,683,236
_3937
Psyr_3938: Psyr_3938 - Amidase, at 4,683,313 to 4,684,686
_3938
Psyr_3939: Psyr_3939 - transcriptional regulator, GntR family, at 4,684,947 to 4,686,026
_3939
Position (kb) 4683
4684
4685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4682.313 kb on - strand at 4682.313 kb on - strand at 4682.313 kb on - strand at 4682.313 kb on - strand at 4682.317 kb on + strand at 4682.318 kb on - strand at 4682.318 kb on - strand at 4682.318 kb on - strand at 4682.318 kb on - strand at 4682.728 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.767 kb on + strand, within Psyr_3937 at 4682.803 kb on + strand, within Psyr_3937 at 4682.803 kb on + strand, within Psyr_3937 at 4682.803 kb on + strand, within Psyr_3937 at 4682.804 kb on - strand, within Psyr_3937 at 4682.804 kb on - strand, within Psyr_3937 at 4682.804 kb on - strand, within Psyr_3937 at 4682.869 kb on + strand, within Psyr_3937 at 4682.870 kb on - strand, within Psyr_3937 at 4683.066 kb on - strand, within Psyr_3937 at 4683.169 kb on + strand at 4683.169 kb on + strand at 4683.170 kb on - strand at 4683.326 kb on - strand at 4683.630 kb on - strand, within Psyr_3938 at 4683.630 kb on - strand, within Psyr_3938 at 4684.137 kb on + strand, within Psyr_3938 at 4684.138 kb on - strand, within Psyr_3938 at 4684.820 kb on + strand at 4684.821 kb on - strand at 4684.915 kb on - strand at 4685.025 kb on - strand at 4685.025 kb on - strand at 4685.360 kb on + strand, within Psyr_3939 at 4685.360 kb on + strand, within Psyr_3939 at 4685.360 kb on + strand, within Psyr_3939 at 4685.360 kb on + strand, within Psyr_3939 at 4685.360 kb on + strand, within Psyr_3939 at 4685.360 kb on + strand, within Psyr_3939 at 4685.361 kb on - strand, within Psyr_3939 at 4685.397 kb on - strand, within Psyr_3939 at 4685.572 kb on - strand, within Psyr_3939
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM remove 4,682,313 - -0.1 4,682,313 - -0.2 4,682,313 - -1.3 4,682,313 - -1.5 4,682,317 + -0.2 4,682,318 - +1.6 4,682,318 - +0.5 4,682,318 - +2.3 4,682,318 - -0.6 4,682,728 + Psyr_3937 0.42 -0.0 4,682,764 + Psyr_3937 0.46 +0.8 4,682,764 + Psyr_3937 0.46 -0.9 4,682,764 + Psyr_3937 0.46 -2.3 4,682,764 + Psyr_3937 0.46 +0.6 4,682,764 + Psyr_3937 0.46 +1.1 4,682,764 + Psyr_3937 0.46 +2.1 4,682,764 + Psyr_3937 0.46 +1.0 4,682,764 + Psyr_3937 0.46 +0.7 4,682,764 + Psyr_3937 0.46 -0.7 4,682,765 - Psyr_3937 0.46 -1.3 4,682,765 - Psyr_3937 0.46 -0.8 4,682,765 - Psyr_3937 0.46 +2.1 4,682,765 - Psyr_3937 0.46 +0.9 4,682,767 + Psyr_3937 0.47 +1.6 4,682,803 + Psyr_3937 0.51 -1.1 4,682,803 + Psyr_3937 0.51 -2.7 4,682,803 + Psyr_3937 0.51 -0.3 4,682,804 - Psyr_3937 0.51 +0.1 4,682,804 - Psyr_3937 0.51 -0.7 4,682,804 - Psyr_3937 0.51 +1.1 4,682,869 + Psyr_3937 0.58 -3.1 4,682,870 - Psyr_3937 0.58 -1.4 4,683,066 - Psyr_3937 0.81 +3.5 4,683,169 + -0.1 4,683,169 + -1.2 4,683,170 - +0.1 4,683,326 - -1.0 4,683,630 - Psyr_3938 0.23 -0.5 4,683,630 - Psyr_3938 0.23 +0.2 4,684,137 + Psyr_3938 0.60 -0.2 4,684,138 - Psyr_3938 0.60 -0.9 4,684,820 + +2.7 4,684,821 - -1.5 4,684,915 - -0.2 4,685,025 - -0.8 4,685,025 - -0.9 4,685,360 + Psyr_3939 0.38 +0.1 4,685,360 + Psyr_3939 0.38 -0.6 4,685,360 + Psyr_3939 0.38 +0.4 4,685,360 + Psyr_3939 0.38 -0.2 4,685,360 + Psyr_3939 0.38 +0.5 4,685,360 + Psyr_3939 0.38 -1.5 4,685,361 - Psyr_3939 0.38 -0.4 4,685,397 - Psyr_3939 0.42 -3.2 4,685,572 - Psyr_3939 0.58 +1.1
Or see this region's nucleotide sequence