Experiment: KB with Hydrastine (1R, 9S) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3623 and Psyr_3624 are separated by 58 nucleotides Psyr_3624 and Psyr_3625 overlap by 11 nucleotides Psyr_3625 and Psyr_3626 are separated by 204 nucleotides Psyr_3626 and Psyr_3627 are separated by 190 nucleotides
Psyr_3623: Psyr_3623 - Protein of unknown function DUF1127, at 4,307,472 to 4,307,705
_3623
Psyr_3624: Psyr_3624 - transcriptional regulator, LysR family, at 4,307,764 to 4,308,654
_3624
Psyr_3625: Psyr_3625 - Protein of unknown function DUF81, at 4,308,644 to 4,309,375
_3625
Psyr_3626: Psyr_3626 - transcriptional regulator, MarR family, at 4,309,580 to 4,310,053
_3626
Psyr_3627: Psyr_3627 - OsmC-like protein, at 4,310,244 to 4,310,663
_3627
Position (kb) 4308
4309
4310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4307.674 kb on - strand, within Psyr_3623 at 4307.810 kb on - strand at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.116 kb on - strand, within Psyr_3624 at 4308.164 kb on - strand, within Psyr_3624 at 4308.628 kb on + strand at 4308.628 kb on + strand at 4308.628 kb on + strand at 4308.628 kb on + strand at 4308.629 kb on - strand at 4308.629 kb on - strand at 4308.629 kb on - strand at 4308.629 kb on - strand at 4308.629 kb on - strand at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.816 kb on + strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4308.817 kb on - strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.032 kb on + strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.033 kb on - strand, within Psyr_3625 at 4309.175 kb on - strand, within Psyr_3625 at 4309.423 kb on + strand at 4309.529 kb on - strand at 4309.543 kb on + strand at 4309.544 kb on - strand at 4309.579 kb on + strand at 4309.579 kb on + strand at 4309.579 kb on + strand at 4309.581 kb on - strand at 4309.694 kb on + strand, within Psyr_3626 at 4309.694 kb on + strand, within Psyr_3626 at 4309.695 kb on - strand, within Psyr_3626 at 4309.695 kb on - strand, within Psyr_3626 at 4309.728 kb on - strand, within Psyr_3626 at 4309.736 kb on + strand, within Psyr_3626 at 4309.737 kb on - strand, within Psyr_3626 at 4309.737 kb on - strand, within Psyr_3626 at 4310.052 kb on - strand at 4310.173 kb on - strand at 4310.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM remove 4,307,674 - Psyr_3623 0.86 -0.5 4,307,810 - +0.3 4,308,116 - Psyr_3624 0.40 -0.7 4,308,116 - Psyr_3624 0.40 -1.1 4,308,116 - Psyr_3624 0.40 -0.2 4,308,116 - Psyr_3624 0.40 -2.8 4,308,164 - Psyr_3624 0.45 +1.9 4,308,628 + -1.0 4,308,628 + +1.5 4,308,628 + +0.6 4,308,628 + -1.4 4,308,629 - +2.8 4,308,629 - -0.2 4,308,629 - +0.5 4,308,629 - -0.2 4,308,629 - -0.4 4,308,816 + Psyr_3625 0.23 +0.2 4,308,816 + Psyr_3625 0.23 +0.1 4,308,816 + Psyr_3625 0.23 -0.8 4,308,816 + Psyr_3625 0.23 +0.1 4,308,816 + Psyr_3625 0.23 +1.4 4,308,817 - Psyr_3625 0.24 -0.0 4,308,817 - Psyr_3625 0.24 -1.4 4,308,817 - Psyr_3625 0.24 +0.9 4,308,817 - Psyr_3625 0.24 +0.9 4,308,817 - Psyr_3625 0.24 +0.1 4,308,817 - Psyr_3625 0.24 -1.6 4,308,817 - Psyr_3625 0.24 +0.7 4,309,032 + Psyr_3625 0.53 -0.9 4,309,032 + Psyr_3625 0.53 -0.8 4,309,033 - Psyr_3625 0.53 +0.7 4,309,033 - Psyr_3625 0.53 -1.2 4,309,033 - Psyr_3625 0.53 +0.4 4,309,033 - Psyr_3625 0.53 -1.2 4,309,175 - Psyr_3625 0.73 +0.2 4,309,423 + -2.6 4,309,529 - -0.8 4,309,543 + +1.2 4,309,544 - -0.0 4,309,579 + -0.7 4,309,579 + +1.9 4,309,579 + -0.3 4,309,581 - +1.8 4,309,694 + Psyr_3626 0.24 -0.6 4,309,694 + Psyr_3626 0.24 -1.1 4,309,695 - Psyr_3626 0.24 +0.2 4,309,695 - Psyr_3626 0.24 +3.8 4,309,728 - Psyr_3626 0.31 +2.2 4,309,736 + Psyr_3626 0.33 -0.0 4,309,737 - Psyr_3626 0.33 +0.2 4,309,737 - Psyr_3626 0.33 +0.4 4,310,052 - -0.7 4,310,173 - +1.3 4,310,257 - -0.0
Or see this region's nucleotide sequence