Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2482

Experiment: KB with Hydrastine (1R, 9S) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2480 and Psyr_2481 are separated by 90 nucleotidesPsyr_2481 and Psyr_2482 are separated by 153 nucleotidesPsyr_2482 and Psyr_2483 overlap by 4 nucleotides Psyr_2480: Psyr_2480 - transcriptional regulator, LysR family, at 2,877,813 to 2,878,730 _2480 Psyr_2481: Psyr_2481 - thiol peroxidase (atypical 2-Cys peroxiredoxin), at 2,878,821 to 2,879,321 _2481 Psyr_2482: Psyr_2482 - Secretion protein HlyD, at 2,879,475 to 2,880,779 _2482 Psyr_2483: Psyr_2483 - Acriflavin resistance protein, at 2,880,776 to 2,883,886 _2483 Position (kb) 2879 2880 2881Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2878.585 kb on + strand, within Psyr_2480at 2878.586 kb on - strand, within Psyr_2480at 2878.586 kb on - strand, within Psyr_2480at 2878.706 kb on + strandat 2878.752 kb on + strandat 2878.754 kb on + strandat 2878.755 kb on - strandat 2878.755 kb on - strandat 2878.963 kb on + strand, within Psyr_2481at 2878.964 kb on - strand, within Psyr_2481at 2878.964 kb on - strand, within Psyr_2481at 2879.016 kb on - strand, within Psyr_2481at 2879.169 kb on + strand, within Psyr_2481at 2879.169 kb on + strand, within Psyr_2481at 2879.169 kb on + strand, within Psyr_2481at 2879.170 kb on - strand, within Psyr_2481at 2879.292 kb on + strandat 2879.334 kb on + strandat 2879.430 kb on + strandat 2879.430 kb on + strandat 2879.430 kb on + strandat 2879.430 kb on + strandat 2879.441 kb on - strandat 2879.718 kb on + strand, within Psyr_2482at 2880.018 kb on + strand, within Psyr_2482at 2880.018 kb on + strand, within Psyr_2482at 2880.427 kb on + strand, within Psyr_2482at 2880.775 kb on + strandat 2880.775 kb on + strandat 2880.775 kb on + strandat 2880.776 kb on - strandat 2880.776 kb on - strandat 2880.860 kb on + strandat 2880.862 kb on + strandat 2881.517 kb on + strand, within Psyr_2483

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM
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2,878,585 + Psyr_2480 0.84 -0.3
2,878,586 - Psyr_2480 0.84 -0.2
2,878,586 - Psyr_2480 0.84 -1.5
2,878,706 + +0.0
2,878,752 + +0.7
2,878,754 + -0.3
2,878,755 - +1.7
2,878,755 - -1.4
2,878,963 + Psyr_2481 0.28 -0.3
2,878,964 - Psyr_2481 0.29 +2.3
2,878,964 - Psyr_2481 0.29 -1.3
2,879,016 - Psyr_2481 0.39 -2.8
2,879,169 + Psyr_2481 0.69 -0.1
2,879,169 + Psyr_2481 0.69 +2.0
2,879,169 + Psyr_2481 0.69 +1.5
2,879,170 - Psyr_2481 0.70 -1.4
2,879,292 + +1.1
2,879,334 + -0.4
2,879,430 + +0.3
2,879,430 + -0.1
2,879,430 + -0.3
2,879,430 + -1.1
2,879,441 - -1.1
2,879,718 + Psyr_2482 0.19 -1.4
2,880,018 + Psyr_2482 0.42 +1.9
2,880,018 + Psyr_2482 0.42 +0.7
2,880,427 + Psyr_2482 0.73 +1.1
2,880,775 + -0.4
2,880,775 + +0.0
2,880,775 + +0.1
2,880,776 - +0.1
2,880,776 - -0.6
2,880,860 + -2.1
2,880,862 + -1.0
2,881,517 + Psyr_2483 0.24 -0.8

Or see this region's nucleotide sequence