Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2189

Experiment: KB with Hydrastine (1R, 9S) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2188 and Psyr_2189 are separated by 199 nucleotidesPsyr_2189 and Psyr_2190 are separated by 59 nucleotides Psyr_2188: Psyr_2188 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer:CHASE3, at 2,542,907 to 2,544,529 _2188 Psyr_2189: Psyr_2189 - transcriptional regulator, ArsR family, at 2,544,729 to 2,545,064 _2189 Psyr_2190: Psyr_2190 - NADH:flavin oxidoreductase/NADH oxidase, at 2,545,124 to 2,546,215 _2190 Position (kb) 2544 2545 2546Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2543.734 kb on - strand, within Psyr_2188at 2543.930 kb on - strand, within Psyr_2188at 2544.400 kb on + strandat 2544.746 kb on + strandat 2544.747 kb on - strandat 2544.747 kb on - strandat 2544.831 kb on + strand, within Psyr_2189at 2544.832 kb on - strand, within Psyr_2189at 2544.832 kb on - strand, within Psyr_2189at 2544.973 kb on + strand, within Psyr_2189at 2544.973 kb on + strand, within Psyr_2189at 2544.973 kb on + strand, within Psyr_2189at 2544.973 kb on + strand, within Psyr_2189at 2544.973 kb on + strand, within Psyr_2189at 2544.974 kb on - strand, within Psyr_2189at 2544.974 kb on - strand, within Psyr_2189at 2544.979 kb on - strand, within Psyr_2189at 2545.222 kb on + strandat 2545.318 kb on + strand, within Psyr_2190

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM
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2,543,734 - Psyr_2188 0.51 -0.5
2,543,930 - Psyr_2188 0.63 +0.3
2,544,400 + +1.3
2,544,746 + -0.3
2,544,747 - +0.3
2,544,747 - +0.2
2,544,831 + Psyr_2189 0.30 +0.8
2,544,832 - Psyr_2189 0.31 -0.1
2,544,832 - Psyr_2189 0.31 -1.3
2,544,973 + Psyr_2189 0.73 +0.1
2,544,973 + Psyr_2189 0.73 +1.3
2,544,973 + Psyr_2189 0.73 -0.5
2,544,973 + Psyr_2189 0.73 +0.1
2,544,973 + Psyr_2189 0.73 +3.3
2,544,974 - Psyr_2189 0.73 -0.2
2,544,974 - Psyr_2189 0.73 +0.1
2,544,979 - Psyr_2189 0.74 +0.8
2,545,222 + +2.5
2,545,318 + Psyr_2190 0.18 -2.3

Or see this region's nucleotide sequence