Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1167

Experiment: KB with Hydrastine (1R, 9S) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1166 and Psyr_1167 are separated by 27 nucleotidesPsyr_1167 and Psyr_1168 overlap by 8 nucleotides Psyr_1166: Psyr_1166 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 1,319,643 to 1,320,659 _1166 Psyr_1167: Psyr_1167 - nucleoside ABC transporter membrane protein, at 1,320,687 to 1,321,607 _1167 Psyr_1168: Psyr_1168 - nucleoside ABC transporter membrane protein, at 1,321,600 to 1,322,709 _1168 Position (kb) 1320 1321 1322Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.819 kb on - strand, within Psyr_1166at 1319.819 kb on - strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166at 1320.095 kb on - strand, within Psyr_1166at 1320.130 kb on + strand, within Psyr_1166at 1320.131 kb on - strand, within Psyr_1166at 1320.221 kb on + strand, within Psyr_1166at 1320.280 kb on + strand, within Psyr_1166at 1320.280 kb on + strand, within Psyr_1166at 1320.280 kb on + strand, within Psyr_1166at 1320.280 kb on + strand, within Psyr_1166at 1320.281 kb on - strand, within Psyr_1166at 1320.281 kb on - strand, within Psyr_1166at 1320.281 kb on - strand, within Psyr_1166at 1320.476 kb on - strand, within Psyr_1166at 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.752 kb on - strandat 1320.752 kb on - strandat 1320.752 kb on - strandat 1320.752 kb on - strandat 1320.775 kb on + strandat 1320.776 kb on - strandat 1320.776 kb on - strandat 1320.983 kb on - strand, within Psyr_1167at 1320.983 kb on - strand, within Psyr_1167at 1320.983 kb on - strand, within Psyr_1167at 1321.671 kb on + strandat 1321.672 kb on - strandat 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.072 kb on + strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.073 kb on - strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.148 kb on + strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.149 kb on - strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.150 kb on + strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.151 kb on - strand, within Psyr_1168at 1322.246 kb on + strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168at 1322.247 kb on - strand, within Psyr_1168

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Hydrastine (1R, 9S) 10 mM
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1,319,776 + Psyr_1166 0.13 -0.1
1,319,776 + Psyr_1166 0.13 -2.0
1,319,776 + Psyr_1166 0.13 +0.8
1,319,776 + Psyr_1166 0.13 -1.0
1,319,776 + Psyr_1166 0.13 +3.7
1,319,776 + Psyr_1166 0.13 +1.6
1,319,776 + Psyr_1166 0.13 -0.2
1,319,776 + Psyr_1166 0.13 -0.4
1,319,776 + Psyr_1166 0.13 -1.0
1,319,776 + Psyr_1166 0.13 +0.6
1,319,776 + Psyr_1166 0.13 +1.8
1,319,776 + Psyr_1166 0.13 -0.4
1,319,777 - Psyr_1166 0.13 +0.2
1,319,777 - Psyr_1166 0.13 +0.7
1,319,777 - Psyr_1166 0.13 -1.4
1,319,777 - Psyr_1166 0.13 -0.2
1,319,777 - Psyr_1166 0.13 -0.8
1,319,777 - Psyr_1166 0.13 -0.4
1,319,777 - Psyr_1166 0.13 +1.2
1,319,777 - Psyr_1166 0.13 +0.4
1,319,819 - Psyr_1166 0.17 -0.4
1,319,819 - Psyr_1166 0.17 -0.2
1,319,840 - Psyr_1166 0.19 -0.6
1,319,840 - Psyr_1166 0.19 +0.9
1,320,095 - Psyr_1166 0.44 +0.1
1,320,130 + Psyr_1166 0.48 +0.6
1,320,131 - Psyr_1166 0.48 -1.1
1,320,221 + Psyr_1166 0.57 -0.1
1,320,280 + Psyr_1166 0.63 -1.4
1,320,280 + Psyr_1166 0.63 -2.4
1,320,280 + Psyr_1166 0.63 -0.4
1,320,280 + Psyr_1166 0.63 +0.4
1,320,281 - Psyr_1166 0.63 -1.4
1,320,281 - Psyr_1166 0.63 +0.4
1,320,281 - Psyr_1166 0.63 +0.9
1,320,476 - Psyr_1166 0.82 -2.4
1,320,751 + -0.1
1,320,751 + +0.2
1,320,751 + -0.6
1,320,751 + +0.5
1,320,752 - +0.0
1,320,752 - +1.0
1,320,752 - +2.5
1,320,752 - -0.9
1,320,775 + -0.7
1,320,776 - -0.8
1,320,776 - +1.6
1,320,983 - Psyr_1167 0.32 -1.4
1,320,983 - Psyr_1167 0.32 +2.2
1,320,983 - Psyr_1167 0.32 -0.3
1,321,671 + +0.9
1,321,672 - +0.7
1,322,072 + Psyr_1168 0.43 -0.3
1,322,072 + Psyr_1168 0.43 +1.4
1,322,072 + Psyr_1168 0.43 -1.0
1,322,072 + Psyr_1168 0.43 +0.5
1,322,072 + Psyr_1168 0.43 -0.8
1,322,072 + Psyr_1168 0.43 -0.6
1,322,072 + Psyr_1168 0.43 -0.5
1,322,073 - Psyr_1168 0.43 -0.0
1,322,073 - Psyr_1168 0.43 +0.6
1,322,073 - Psyr_1168 0.43 -1.6
1,322,073 - Psyr_1168 0.43 -0.4
1,322,073 - Psyr_1168 0.43 +0.1
1,322,073 - Psyr_1168 0.43 +3.8
1,322,148 + Psyr_1168 0.49 +0.2
1,322,148 + Psyr_1168 0.49 -0.2
1,322,149 - Psyr_1168 0.49 -0.0
1,322,149 - Psyr_1168 0.49 +1.2
1,322,149 - Psyr_1168 0.49 +0.8
1,322,149 - Psyr_1168 0.49 +0.6
1,322,149 - Psyr_1168 0.49 +0.2
1,322,149 - Psyr_1168 0.49 +1.3
1,322,149 - Psyr_1168 0.49 -0.4
1,322,149 - Psyr_1168 0.49 +0.6
1,322,150 + Psyr_1168 0.50 -0.6
1,322,150 + Psyr_1168 0.50 +1.3
1,322,150 + Psyr_1168 0.50 -0.7
1,322,150 + Psyr_1168 0.50 +0.8
1,322,150 + Psyr_1168 0.50 -0.1
1,322,150 + Psyr_1168 0.50 +1.5
1,322,150 + Psyr_1168 0.50 +0.4
1,322,150 + Psyr_1168 0.50 +0.0
1,322,150 + Psyr_1168 0.50 +0.1
1,322,150 + Psyr_1168 0.50 -0.9
1,322,150 + Psyr_1168 0.50 +0.2
1,322,150 + Psyr_1168 0.50 -0.7
1,322,150 + Psyr_1168 0.50 -0.7
1,322,150 + Psyr_1168 0.50 +0.9
1,322,151 - Psyr_1168 0.50 +2.2
1,322,151 - Psyr_1168 0.50 -2.0
1,322,151 - Psyr_1168 0.50 +0.8
1,322,151 - Psyr_1168 0.50 +0.1
1,322,151 - Psyr_1168 0.50 +0.0
1,322,151 - Psyr_1168 0.50 +0.5
1,322,151 - Psyr_1168 0.50 -0.2
1,322,151 - Psyr_1168 0.50 +1.5
1,322,246 + Psyr_1168 0.58 +0.8
1,322,247 - Psyr_1168 0.58 +0.5
1,322,247 - Psyr_1168 0.58 +0.2

Or see this region's nucleotide sequence