Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_5011

Experiment: KB with Emodin 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Emodin 10 mM
5,942,696	+				-0.6
5,942,696	+				-0.1
5,942,696	+				+0.1
5,942,697	-				-1.1
5,942,697	-				-0.8
5,942,697	-				+0.5
5,942,697	-				-0.5
5,942,726	+				-0.6
5,942,726	+				-0.7
5,942,726	+				+0.2
5,942,726	+				+4.8
5,942,726	+				+0.0
5,942,726	+				+0.1
5,942,726	+				-2.7
5,942,726	+				-0.9
5,942,726	+				-0.7
5,942,726	+				-0.1
5,942,726	+				-0.1
5,942,726	+				+0.4
5,942,726	+				+0.5
5,942,726	+				-0.6
5,942,727	-				-0.1
5,942,727	-				-1.6
5,942,727	-				+1.0
5,942,727	-				-0.2
5,942,727	-				-0.7
5,942,727	-				+0.9
5,942,727	-				+1.1
5,942,727	-				+1.0
5,942,727	-				-0.6
5,942,727	-				-1.8
5,942,727	-				-1.2
5,942,727	-				-1.5
5,942,727	-				-1.2
5,942,727	-				+0.5
5,942,727	-				-0.4
5,942,770	+				-0.0
5,942,813	+		Psyr_5010	0.11	+0.3
5,942,814	-		Psyr_5010	0.11	-2.2
5,942,839	-		Psyr_5010	0.14	-1.2
5,942,839	-		Psyr_5010	0.14	-1.3
5,942,882	+		Psyr_5010	0.18	+2.5
5,942,903	+		Psyr_5010	0.20	+0.7
5,942,903	+		Psyr_5010	0.20	-0.6
5,942,903	+		Psyr_5010	0.20	+0.3
5,942,903	+		Psyr_5010	0.20	-1.0
5,942,903	+		Psyr_5010	0.20	+1.5
5,943,044	+		Psyr_5010	0.35	+0.1
5,943,044	+		Psyr_5010	0.35	+0.4
5,943,045	-		Psyr_5010	0.35	-0.4
5,943,097	+		Psyr_5010	0.41	-1.5
5,943,098	-		Psyr_5010	0.41	-0.2
5,943,098	-		Psyr_5010	0.41	-2.2
5,943,098	-		Psyr_5010	0.41	-0.9
5,943,107	-		Psyr_5010	0.42	-0.7
5,943,350	+		Psyr_5010	0.67	-1.5
5,943,350	+		Psyr_5010	0.67	+0.1
5,943,350	+		Psyr_5010	0.67	+3.7
5,943,350	+		Psyr_5010	0.67	+0.8
5,943,350	+		Psyr_5010	0.67	+0.6
5,943,350	+		Psyr_5010	0.67	+0.5
5,943,350	+		Psyr_5010	0.67	-0.6
5,943,351	-		Psyr_5010	0.68	-0.3
5,943,351	-		Psyr_5010	0.68	+1.1
5,943,351	-		Psyr_5010	0.68	+0.3
5,943,351	-		Psyr_5010	0.68	+0.2
5,943,419	+		Psyr_5010	0.75	-1.0
5,943,419	+		Psyr_5010	0.75	-0.2
5,943,419	+		Psyr_5010	0.75	+0.1
5,943,629	+				+1.5
5,943,629	+				+0.3
5,943,969	+				+4.7
5,943,969	+				+3.1
5,943,969	+				-0.1
5,943,969	+				+1.3
5,943,969	+				+0.6
5,943,969	+				-0.6
5,943,969	+				+1.0
5,943,969	+				+1.3
5,943,969	+				-0.4
5,943,969	+				+1.3
5,943,969	+				+0.2
5,943,969	+				-0.7
5,943,969	+				+0.1
5,943,970	-				+1.3
5,943,970	-				-0.6
5,943,970	-				+0.7
5,943,970	-				+0.2
5,943,970	-				-1.3
5,943,970	-				-1.1
5,944,420	+		Psyr_5011	0.22	+0.4
5,944,421	-		Psyr_5011	0.22	-0.4
5,944,421	-		Psyr_5011	0.22	-0.8
5,944,421	-		Psyr_5011	0.22	-0.4
5,944,459	+		Psyr_5011	0.23	-0.2
5,944,501	+		Psyr_5011	0.25	-0.5
5,944,501	+		Psyr_5011	0.25	+1.0
5,944,501	+		Psyr_5011	0.25	-0.9
5,944,501	+		Psyr_5011	0.25	+2.1
5,944,502	-		Psyr_5011	0.25	-0.3
5,944,502	-		Psyr_5011	0.25	-0.3
5,944,625	+		Psyr_5011	0.28	-0.2
5,944,625	+		Psyr_5011	0.28	-0.0
5,944,625	+		Psyr_5011	0.28	+0.1
5,944,666	+		Psyr_5011	0.29	+1.4
5,944,667	-		Psyr_5011	0.29	-0.1
5,944,667	-		Psyr_5011	0.29	+1.2
5,944,700	+		Psyr_5011	0.30	+0.0
5,944,700	+		Psyr_5011	0.30	+0.9
5,944,700	+		Psyr_5011	0.30	-0.4
5,944,701	-		Psyr_5011	0.30	+0.5
5,944,791	+		Psyr_5011	0.33	-0.1
5,944,792	-		Psyr_5011	0.33	-0.4
5,945,066	-		Psyr_5011	0.41	+0.9
5,945,066	-		Psyr_5011	0.41	+0.3
5,945,066	-		Psyr_5011	0.41	+1.6
5,945,218	+		Psyr_5011	0.45	+0.2
5,945,218	+		Psyr_5011	0.45	-0.5
5,945,218	+		Psyr_5011	0.45	+0.3
5,945,218	+		Psyr_5011	0.45	-0.5
5,945,218	+		Psyr_5011	0.45	-0.5
5,945,218	+		Psyr_5011	0.45	-0.1
5,945,218	+		Psyr_5011	0.45	-0.2
5,945,218	+		Psyr_5011	0.45	+0.6
5,945,218	+		Psyr_5011	0.45	-0.3
5,945,218	+		Psyr_5011	0.45	-0.3
5,945,218	+		Psyr_5011	0.45	+0.1
5,945,218	+		Psyr_5011	0.45	+0.8
5,945,218	+		Psyr_5011	0.45	-0.8
5,945,219	-		Psyr_5011	0.45	+0.6
5,945,219	-		Psyr_5011	0.45	-0.2
5,945,219	-		Psyr_5011	0.45	+1.3
5,945,219	-		Psyr_5011	0.45	-0.5
5,945,219	-		Psyr_5011	0.45	-0.4
5,945,219	-		Psyr_5011	0.45	+0.7
5,945,219	-		Psyr_5011	0.45	-0.4
5,945,219	-		Psyr_5011	0.45	+0.4
5,945,219	-		Psyr_5011	0.45	-0.2
5,945,219	-		Psyr_5011	0.45	+0.2
5,945,219	-		Psyr_5011	0.45	+1.4
5,945,248	+		Psyr_5011	0.46	+1.5
5,945,249	-		Psyr_5011	0.46	+1.5
5,945,249	-		Psyr_5011	0.46	+1.4
5,945,249	-		Psyr_5011	0.46	+0.1
5,945,249	-		Psyr_5011	0.46	+1.5
5,945,252	+		Psyr_5011	0.46	+1.6
5,945,252	+		Psyr_5011	0.46	+1.1
5,945,252	+		Psyr_5011	0.46	+0.4
5,945,252	+		Psyr_5011	0.46	+1.1
5,945,253	-		Psyr_5011	0.46	+1.5
5,945,253	-		Psyr_5011	0.46	+0.4
5,945,253	-		Psyr_5011	0.46	+0.3
5,945,253	-		Psyr_5011	0.46	-1.1
5,945,253	-		Psyr_5011	0.46	+0.7
5,945,253	-		Psyr_5011	0.46	-0.3
5,945,253	-		Psyr_5011	0.46	-0.6
5,945,253	-		Psyr_5011	0.46	+0.9
5,945,253	-		Psyr_5011	0.46	-1.6
5,945,253	-		Psyr_5011	0.46	-0.5
5,945,253	-		Psyr_5011	0.46	+0.4
5,945,253	-		Psyr_5011	0.46	-0.0
5,945,253	-		Psyr_5011	0.46	+0.0
5,945,281	+		Psyr_5011	0.47	+0.1
5,945,281	+		Psyr_5011	0.47	-0.3
5,945,281	+		Psyr_5011	0.47	+1.4
5,945,282	-		Psyr_5011	0.47	+0.6
5,945,313	+		Psyr_5011	0.48	-0.2
5,945,313	+		Psyr_5011	0.48	-0.2
5,945,314	-		Psyr_5011	0.48	-0.8
5,945,314	-		Psyr_5011	0.48	-0.5
5,945,458	+		Psyr_5011	0.52	-1.8
5,945,522	-		Psyr_5011	0.54	-0.1
5,945,522	-		Psyr_5011	0.54	+0.1
5,945,558	+		Psyr_5011	0.55	+0.1
5,945,558	+		Psyr_5011	0.55	+0.2
5,945,558	+		Psyr_5011	0.55	-0.4
5,945,559	-		Psyr_5011	0.55	+0.4
5,945,559	-		Psyr_5011	0.55	+0.3
5,945,559	-		Psyr_5011	0.55	+1.0
5,945,559	-		Psyr_5011	0.55	-0.5
5,945,559	-		Psyr_5011	0.55	-1.1
5,945,559	-		Psyr_5011	0.55	-2.3
5,945,559	-		Psyr_5011	0.55	-0.9
5,945,578	+		Psyr_5011	0.56	-1.3
5,945,578	+		Psyr_5011	0.56	+0.4
5,945,578	+		Psyr_5011	0.56	+0.7
5,945,578	+		Psyr_5011	0.56	-2.9
5,945,578	+		Psyr_5011	0.56	+0.8
5,945,579	-		Psyr_5011	0.56	+1.1
5,945,579	-		Psyr_5011	0.56	+0.8
5,945,579	-		Psyr_5011	0.56	-0.3
5,945,579	-		Psyr_5011	0.56	-1.1
5,945,597	-		Psyr_5011	0.56	+0.3
5,945,597	-		Psyr_5011	0.56	-0.9
5,945,597	-		Psyr_5011	0.56	-1.1
5,945,769	+		Psyr_5011	0.61	+0.6
5,945,769	+		Psyr_5011	0.61	+0.8
5,945,770	-		Psyr_5011	0.61	+0.3
5,945,881	-		Psyr_5011	0.65	-0.6
5,945,994	+		Psyr_5011	0.68	+0.3
5,945,994	+		Psyr_5011	0.68	-0.3
5,945,994	+		Psyr_5011	0.68	-0.3
5,945,995	-		Psyr_5011	0.68	+1.3
5,945,995	-		Psyr_5011	0.68	+0.2
5,946,027	+		Psyr_5011	0.69	-1.9
5,946,027	+		Psyr_5011	0.69	-0.1
5,946,028	-		Psyr_5011	0.69	-0.5
5,946,214	+		Psyr_5011	0.74	+0.8
5,946,262	+		Psyr_5011	0.76	+0.1
5,946,262	+		Psyr_5011	0.76	+1.7
5,946,262	+		Psyr_5011	0.76	-1.4
5,946,262	+		Psyr_5011	0.76	+0.4
5,946,262	+		Psyr_5011	0.76	-0.1
5,946,263	-		Psyr_5011	0.76	-1.0
5,946,263	-		Psyr_5011	0.76	-0.0
5,946,263	-		Psyr_5011	0.76	-0.2
5,946,263	-		Psyr_5011	0.76	+0.3
5,946,332	-		Psyr_5011	0.78	-1.2
5,946,332	-		Psyr_5011	0.78	+0.6
5,946,499	+		Psyr_5011	0.83	-0.1
5,946,499	+		Psyr_5011	0.83	-0.4
5,946,500	-		Psyr_5011	0.83	-1.3
5,946,500	-		Psyr_5011	0.83	+0.7
5,946,500	-		Psyr_5011	0.83	-0.1
5,946,500	-		Psyr_5011	0.83	-0.7
5,946,500	-		Psyr_5011	0.83	+0.3
5,946,515	-		Psyr_5011	0.83	+0.4
5,946,515	-		Psyr_5011	0.83	-1.6
5,946,515	-		Psyr_5011	0.83	+0.7
5,946,586	+		Psyr_5011	0.85	-1.7
5,946,587	-		Psyr_5011	0.85	-0.7
5,946,705	+		Psyr_5011	0.88	-1.5
5,946,798	+				-0.8
5,946,798	+				-1.6
5,946,827	-				-0.1
5,946,827	-				-2.7
5,946,827	-				-0.0
5,946,943	+				+0.1
5,946,943	+				-0.1
5,946,943	+				-0.4
5,946,943	+				+0.7
5,946,943	+				-1.5
5,946,943	+				-0.9
5,946,943	+				-0.4
5,946,944	-				-0.1
5,946,944	-				+0.4
5,947,075	+				-0.8
5,947,076	-				+0.4
5,947,119	+				-0.1
5,947,119	+				-0.1
5,947,119	+				-3.0
5,947,119	+				+0.6
5,947,119	+				+1.5
5,947,119	+				-2.5
5,947,119	+				-0.3
5,947,119	+				-1.2
5,947,120	-				-1.1
5,947,120	-				+1.1
5,947,120	-				-1.4
5,947,398	+		Psyr_5012	0.55	+1.1
5,947,398	+		Psyr_5012	0.55	+0.1
5,947,398	+		Psyr_5012	0.55	-1.1
5,947,398	+		Psyr_5012	0.55	-0.5
5,947,398	+		Psyr_5012	0.55	-0.9
5,947,398	+		Psyr_5012	0.55	-0.5
5,947,398	+		Psyr_5012	0.55	-0.7
5,947,398	+		Psyr_5012	0.55	+0.4
5,947,398	+		Psyr_5012	0.55	-0.8
5,947,398	+		Psyr_5012	0.55	-0.6
5,947,398	+		Psyr_5012	0.55	-1.1
5,947,398	+		Psyr_5012	0.55	-0.2
5,947,398	+		Psyr_5012	0.55	-0.6
5,947,399	-		Psyr_5012	0.55	+0.0
5,947,399	-		Psyr_5012	0.55	+1.1
5,947,399	-		Psyr_5012	0.55	+0.7
5,947,399	-		Psyr_5012	0.55	+0.2
5,947,399	-		Psyr_5012	0.55	+0.4
5,947,399	-		Psyr_5012	0.55	-0.6
5,947,399	-		Psyr_5012	0.55	-0.2
5,947,399	-		Psyr_5012	0.55	+0.6
5,947,399	-		Psyr_5012	0.55	-0.5
5,947,399	-		Psyr_5012	0.55	-0.2
5,947,399	-		Psyr_5012	0.55	-0.1
5,947,399	-		Psyr_5012	0.55	-1.0
5,947,399	-		Psyr_5012	0.55	-1.7
5,947,399	-		Psyr_5012	0.55	-2.8
5,947,399	-		Psyr_5012	0.55	-0.5
5,947,399	-		Psyr_5012	0.55	+0.4
5,947,400	+		Psyr_5012	0.55	-0.1
5,947,400	+		Psyr_5012	0.55	-0.6
5,947,400	+		Psyr_5012	0.55	+0.2
5,947,401	-		Psyr_5012	0.56	-0.7
5,947,401	-		Psyr_5012	0.56	-0.3
5,947,401	-		Psyr_5012	0.56	-0.7
5,947,401	-		Psyr_5012	0.56	+0.1
5,947,401	-		Psyr_5012	0.56	-1.0
5,947,401	-		Psyr_5012	0.56	-0.6
5,947,401	-		Psyr_5012	0.56	-0.9
5,947,589	+				+0.6
5,947,666	+				+0.9
5,947,666	+				-0.1
5,947,703	+				-0.8
5,947,745	-		Psyr_RNA78	0.12	+0.7
5,947,745	-		Psyr_RNA78	0.12	-0.7
5,947,745	-		Psyr_RNA78	0.12	+1.4
5,947,745	-		Psyr_RNA78	0.12	-0.8
5,947,833	+		Psyr_RNA78	0.89	-0.1
5,947,833	+		Psyr_RNA78	0.89	-0.5
5,947,834	-				-0.4
5,947,834	-				+1.0
5,947,834	-				-3.1
5,947,834	-				+0.5
5,947,834	-				+0.2
5,947,873	+				-0.9
5,947,901	+				-0.5
5,947,901	+				+0.4
5,947,902	-				-0.6
5,947,902	-				-0.3
5,947,906	-				+0.7
5,947,927	-				-1.3