Experiment: KB with Emodin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4517 and Psyr_4518 are separated by 338 nucleotides Psyr_4518 and Psyr_4519 are separated by 9 nucleotides Psyr_4519 and Psyr_4520 are separated by 78 nucleotides
Psyr_4517: Psyr_4517 - SEC-C motif protein, at 5,381,044 to 5,382,201
_4517
Psyr_4518: Psyr_4518 - single-strand binding protein, at 5,382,540 to 5,383,091
_4518
Psyr_4519: Psyr_4519 - General substrate transporter:Major facilitator superfamily, at 5,383,101 to 5,384,495
_4519
Psyr_4520: Psyr_4520 - Excinuclease ABC subunit A, at 5,384,574 to 5,387,459
_4520
Position (kb) 5383
5384
5385 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5382.117 kb on + strand at 5382.119 kb on + strand at 5382.120 kb on - strand at 5382.120 kb on - strand at 5382.185 kb on + strand at 5382.186 kb on - strand at 5382.202 kb on - strand at 5382.209 kb on - strand at 5382.253 kb on - strand at 5382.313 kb on + strand at 5382.324 kb on + strand at 5382.330 kb on - strand at 5382.460 kb on + strand at 5382.461 kb on - strand at 5382.468 kb on - strand at 5382.526 kb on + strand at 5382.526 kb on + strand at 5382.533 kb on - strand at 5383.180 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.184 kb on - strand at 5383.294 kb on - strand, within Psyr_4519 at 5383.294 kb on - strand, within Psyr_4519 at 5383.294 kb on - strand, within Psyr_4519 at 5383.605 kb on + strand, within Psyr_4519 at 5383.605 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.675 kb on + strand, within Psyr_4519 at 5383.676 kb on - strand, within Psyr_4519 at 5383.676 kb on - strand, within Psyr_4519 at 5383.676 kb on - strand, within Psyr_4519 at 5383.676 kb on - strand, within Psyr_4519 at 5383.676 kb on - strand, within Psyr_4519 at 5383.676 kb on - strand, within Psyr_4519 at 5383.726 kb on + strand, within Psyr_4519 at 5383.726 kb on + strand, within Psyr_4519 at 5383.727 kb on - strand, within Psyr_4519 at 5383.727 kb on - strand, within Psyr_4519 at 5383.908 kb on + strand, within Psyr_4519 at 5383.936 kb on + strand, within Psyr_4519 at 5384.163 kb on - strand, within Psyr_4519 at 5384.163 kb on - strand, within Psyr_4519 at 5384.242 kb on + strand, within Psyr_4519 at 5384.243 kb on - strand, within Psyr_4519 at 5384.243 kb on - strand, within Psyr_4519 at 5384.243 kb on - strand, within Psyr_4519 at 5384.243 kb on - strand, within Psyr_4519 at 5384.243 kb on - strand, within Psyr_4519 at 5384.318 kb on - strand, within Psyr_4519 at 5384.374 kb on + strand at 5384.375 kb on - strand at 5384.527 kb on + strand at 5384.528 kb on - strand at 5384.544 kb on + strand at 5384.544 kb on + strand at 5384.544 kb on + strand at 5384.545 kb on - strand at 5384.553 kb on + strand at 5384.554 kb on - strand at 5384.588 kb on + strand at 5384.588 kb on + strand at 5384.588 kb on + strand at 5384.590 kb on + strand at 5384.591 kb on - strand at 5384.591 kb on - strand at 5384.591 kb on - strand at 5384.591 kb on - strand at 5384.641 kb on + strand at 5384.642 kb on - strand at 5384.672 kb on + strand at 5384.781 kb on + strand at 5384.781 kb on + strand at 5384.782 kb on - strand at 5384.782 kb on - strand at 5384.802 kb on + strand at 5384.847 kb on - strand at 5384.891 kb on + strand, within Psyr_4520 at 5384.891 kb on + strand, within Psyr_4520 at 5384.891 kb on + strand, within Psyr_4520 at 5384.891 kb on + strand, within Psyr_4520 at 5384.891 kb on + strand, within Psyr_4520 at 5384.892 kb on - strand, within Psyr_4520 at 5384.892 kb on - strand, within Psyr_4520 at 5384.892 kb on - strand, within Psyr_4520 at 5384.943 kb on + strand, within Psyr_4520 at 5384.944 kb on - strand, within Psyr_4520 at 5384.944 kb on - strand, within Psyr_4520 at 5384.944 kb on - strand, within Psyr_4520 at 5384.958 kb on + strand, within Psyr_4520
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Emodin 10 mM remove 5,382,117 + +1.0 5,382,119 + -0.1 5,382,120 - -0.6 5,382,120 - -0.2 5,382,185 + -0.3 5,382,186 - -0.5 5,382,202 - +1.0 5,382,209 - +1.2 5,382,253 - +0.4 5,382,313 + -0.3 5,382,324 + +0.6 5,382,330 - +0.4 5,382,460 + +1.3 5,382,461 - +1.7 5,382,468 - -0.7 5,382,526 + +0.0 5,382,526 + -1.1 5,382,533 - +0.3 5,383,180 - -2.8 5,383,184 - -0.9 5,383,184 - +2.0 5,383,184 - +2.6 5,383,184 - -4.2 5,383,294 - Psyr_4519 0.14 -0.2 5,383,294 - Psyr_4519 0.14 -3.6 5,383,294 - Psyr_4519 0.14 -0.4 5,383,605 + Psyr_4519 0.36 -1.8 5,383,605 + Psyr_4519 0.36 -1.3 5,383,675 + Psyr_4519 0.41 -3.2 5,383,675 + Psyr_4519 0.41 -2.6 5,383,675 + Psyr_4519 0.41 -3.7 5,383,675 + Psyr_4519 0.41 -0.8 5,383,675 + Psyr_4519 0.41 +1.0 5,383,675 + Psyr_4519 0.41 -2.1 5,383,676 - Psyr_4519 0.41 -3.2 5,383,676 - Psyr_4519 0.41 -4.0 5,383,676 - Psyr_4519 0.41 -4.0 5,383,676 - Psyr_4519 0.41 -2.9 5,383,676 - Psyr_4519 0.41 +1.0 5,383,676 - Psyr_4519 0.41 -0.8 5,383,726 + Psyr_4519 0.45 -3.1 5,383,726 + Psyr_4519 0.45 -2.2 5,383,727 - Psyr_4519 0.45 -0.6 5,383,727 - Psyr_4519 0.45 -3.5 5,383,908 + Psyr_4519 0.58 -1.6 5,383,936 + Psyr_4519 0.60 -1.6 5,384,163 - Psyr_4519 0.76 -2.6 5,384,163 - Psyr_4519 0.76 -2.1 5,384,242 + Psyr_4519 0.82 -3.2 5,384,243 - Psyr_4519 0.82 -1.3 5,384,243 - Psyr_4519 0.82 -3.0 5,384,243 - Psyr_4519 0.82 -3.0 5,384,243 - Psyr_4519 0.82 -1.8 5,384,243 - Psyr_4519 0.82 -1.8 5,384,318 - Psyr_4519 0.87 -4.2 5,384,374 + -1.0 5,384,375 - -3.4 5,384,527 + -0.5 5,384,528 - -1.4 5,384,544 + +0.3 5,384,544 + +0.1 5,384,544 + -0.2 5,384,545 - -0.4 5,384,553 + -0.6 5,384,554 - +0.6 5,384,588 + -1.0 5,384,588 + -0.4 5,384,588 + -0.1 5,384,590 + -0.1 5,384,591 - +0.6 5,384,591 - +0.3 5,384,591 - +1.4 5,384,591 - -0.3 5,384,641 + +0.9 5,384,642 - +0.0 5,384,672 + -1.2 5,384,781 + -1.1 5,384,781 + -0.9 5,384,782 - -0.7 5,384,782 - +0.0 5,384,802 + -0.2 5,384,847 - -0.2 5,384,891 + Psyr_4520 0.11 -0.8 5,384,891 + Psyr_4520 0.11 +0.0 5,384,891 + Psyr_4520 0.11 +0.7 5,384,891 + Psyr_4520 0.11 -2.3 5,384,891 + Psyr_4520 0.11 -0.2 5,384,892 - Psyr_4520 0.11 -0.7 5,384,892 - Psyr_4520 0.11 +1.1 5,384,892 - Psyr_4520 0.11 -0.6 5,384,943 + Psyr_4520 0.13 -0.3 5,384,944 - Psyr_4520 0.13 +0.0 5,384,944 - Psyr_4520 0.13 -0.3 5,384,944 - Psyr_4520 0.13 +1.0 5,384,958 + Psyr_4520 0.13 -1.7
Or see this region's nucleotide sequence