Experiment: KB with Emodin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4137 and Psyr_4138 overlap by 4 nucleotides Psyr_4138 and Psyr_4139 are separated by 10 nucleotides Psyr_4139 and Psyr_4140 overlap by 1 nucleotides Psyr_4140 and Psyr_4141 overlap by 1 nucleotides
Psyr_4137: Psyr_4137 - Sulfate transporter/antisigma-factor antagonist STAS, at 4,927,698 to 4,928,003
_4137
Psyr_4138: Psyr_4138 - Toluene tolerance, at 4,928,000 to 4,928,650
_4138
Psyr_4139: Psyr_4139 - Mce4/Rv3499c/MTV023.06c protein, at 4,928,661 to 4,929,128
_4139
Psyr_4140: Psyr_4140 - Protein of unknown function DUF140, at 4,929,128 to 4,929,925
_4140
Psyr_4141: Psyr_4141 - ABC transporter, at 4,929,925 to 4,930,734
_4141
Position (kb) 4928
4929
4930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4927.741 kb on - strand, within Psyr_4137 at 4927.741 kb on - strand, within Psyr_4137 at 4928.033 kb on - strand at 4928.202 kb on + strand, within Psyr_4138 at 4928.202 kb on + strand, within Psyr_4138 at 4928.203 kb on - strand, within Psyr_4138 at 4928.203 kb on - strand, within Psyr_4138 at 4928.214 kb on + strand, within Psyr_4138 at 4928.331 kb on + strand, within Psyr_4138 at 4928.403 kb on + strand, within Psyr_4138 at 4928.478 kb on + strand, within Psyr_4138 at 4928.478 kb on + strand, within Psyr_4138 at 4928.478 kb on + strand, within Psyr_4138 at 4928.478 kb on + strand, within Psyr_4138 at 4928.479 kb on - strand, within Psyr_4138 at 4928.479 kb on - strand, within Psyr_4138 at 4928.502 kb on + strand, within Psyr_4138 at 4928.503 kb on - strand, within Psyr_4138 at 4928.618 kb on + strand at 4928.642 kb on - strand at 4928.642 kb on - strand at 4928.797 kb on + strand, within Psyr_4139 at 4928.798 kb on - strand, within Psyr_4139 at 4928.901 kb on - strand, within Psyr_4139 at 4928.955 kb on + strand, within Psyr_4139 at 4928.955 kb on + strand, within Psyr_4139 at 4928.955 kb on + strand, within Psyr_4139 at 4928.956 kb on - strand, within Psyr_4139 at 4928.956 kb on - strand, within Psyr_4139 at 4928.985 kb on - strand, within Psyr_4139 at 4928.985 kb on - strand, within Psyr_4139 at 4929.001 kb on + strand, within Psyr_4139 at 4929.002 kb on - strand, within Psyr_4139 at 4929.008 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.011 kb on - strand, within Psyr_4139 at 4929.011 kb on - strand, within Psyr_4139 at 4929.160 kb on + strand at 4929.290 kb on + strand, within Psyr_4140 at 4929.291 kb on - strand, within Psyr_4140 at 4929.341 kb on - strand, within Psyr_4140 at 4929.372 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.490 kb on - strand, within Psyr_4140 at 4929.672 kb on + strand, within Psyr_4140 at 4929.672 kb on + strand, within Psyr_4140 at 4929.862 kb on + strand at 4929.917 kb on - strand at 4929.940 kb on + strand at 4929.941 kb on - strand at 4930.017 kb on + strand, within Psyr_4141 at 4930.017 kb on + strand, within Psyr_4141 at 4930.017 kb on + strand, within Psyr_4141 at 4930.018 kb on - strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Emodin 10 mM remove 4,927,741 - Psyr_4137 0.14 +0.2 4,927,741 - Psyr_4137 0.14 -3.5 4,928,033 - -1.9 4,928,202 + Psyr_4138 0.31 -3.4 4,928,202 + Psyr_4138 0.31 -0.1 4,928,203 - Psyr_4138 0.31 -3.3 4,928,203 - Psyr_4138 0.31 -2.3 4,928,214 + Psyr_4138 0.33 +1.3 4,928,331 + Psyr_4138 0.51 +2.9 4,928,403 + Psyr_4138 0.62 +0.9 4,928,478 + Psyr_4138 0.73 -1.1 4,928,478 + Psyr_4138 0.73 -0.9 4,928,478 + Psyr_4138 0.73 -1.8 4,928,478 + Psyr_4138 0.73 +0.8 4,928,479 - Psyr_4138 0.74 -0.1 4,928,479 - Psyr_4138 0.74 -2.9 4,928,502 + Psyr_4138 0.77 +0.9 4,928,503 - Psyr_4138 0.77 -2.3 4,928,618 + -2.3 4,928,642 - -2.5 4,928,642 - -0.7 4,928,797 + Psyr_4139 0.29 -0.5 4,928,798 - Psyr_4139 0.29 -1.1 4,928,901 - Psyr_4139 0.51 +1.9 4,928,955 + Psyr_4139 0.63 -3.6 4,928,955 + Psyr_4139 0.63 +1.7 4,928,955 + Psyr_4139 0.63 -1.2 4,928,956 - Psyr_4139 0.63 -0.1 4,928,956 - Psyr_4139 0.63 -1.8 4,928,985 - Psyr_4139 0.69 -2.4 4,928,985 - Psyr_4139 0.69 -2.5 4,929,001 + Psyr_4139 0.73 -2.6 4,929,002 - Psyr_4139 0.73 +0.3 4,929,008 + Psyr_4139 0.74 -0.4 4,929,010 + Psyr_4139 0.75 -1.1 4,929,010 + Psyr_4139 0.75 -2.4 4,929,010 + Psyr_4139 0.75 -0.5 4,929,010 + Psyr_4139 0.75 -1.4 4,929,011 - Psyr_4139 0.75 -1.4 4,929,011 - Psyr_4139 0.75 -1.9 4,929,160 + -2.4 4,929,290 + Psyr_4140 0.20 -0.4 4,929,291 - Psyr_4140 0.20 -0.6 4,929,341 - Psyr_4140 0.27 -1.7 4,929,372 + Psyr_4140 0.31 -0.1 4,929,489 + Psyr_4140 0.45 -0.1 4,929,489 + Psyr_4140 0.45 -2.7 4,929,489 + Psyr_4140 0.45 -2.7 4,929,489 + Psyr_4140 0.45 -2.5 4,929,489 + Psyr_4140 0.45 -3.2 4,929,490 - Psyr_4140 0.45 -0.1 4,929,672 + Psyr_4140 0.68 -1.1 4,929,672 + Psyr_4140 0.68 -1.1 4,929,862 + +1.4 4,929,917 - -0.2 4,929,940 + -0.8 4,929,941 - -0.5 4,930,017 + Psyr_4141 0.11 -0.6 4,930,017 + Psyr_4141 0.11 -0.4 4,930,017 + Psyr_4141 0.11 -1.3 4,930,018 - Psyr_4141 0.11 -2.4 4,930,088 + Psyr_4141 0.20 -0.5 4,930,088 + Psyr_4141 0.20 -0.6 4,930,089 - Psyr_4141 0.20 -1.4 4,930,089 - Psyr_4141 0.20 -1.1 4,930,089 - Psyr_4141 0.20 -2.5 4,930,089 - Psyr_4141 0.20 -1.1
Or see this region's nucleotide sequence