Experiment: KB with Emodin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3999 and Psyr_4000 are separated by 170 nucleotides Psyr_4000 and Psyr_4001 are separated by 167 nucleotides Psyr_4001 and Psyr_4002 are separated by 145 nucleotides
Psyr_3999: Psyr_3999 - General substrate transporter:Major facilitator superfamily, at 4,763,337 to 4,764,662
_3999
Psyr_4000: Psyr_4000 - hypothetical protein, at 4,764,833 to 4,765,087
_4000
Psyr_4001: Psyr_4001 - conserved domain protein, at 4,765,255 to 4,765,572
_4001
Psyr_4002: Psyr_4002 - conserved hypothetical protein, at 4,765,718 to 4,766,341
_4002
Position (kb) 4764
4765
4766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4763.844 kb on + strand, within Psyr_3999 at 4763.845 kb on - strand, within Psyr_3999 at 4763.925 kb on + strand, within Psyr_3999 at 4763.926 kb on - strand, within Psyr_3999 at 4763.926 kb on - strand, within Psyr_3999 at 4763.926 kb on - strand, within Psyr_3999 at 4763.926 kb on - strand, within Psyr_3999 at 4763.926 kb on - strand, within Psyr_3999 at 4763.926 kb on - strand, within Psyr_3999 at 4763.926 kb on - strand, within Psyr_3999 at 4763.926 kb on - strand, within Psyr_3999 at 4763.926 kb on - strand, within Psyr_3999 at 4763.926 kb on - strand, within Psyr_3999 at 4764.132 kb on + strand, within Psyr_3999 at 4764.133 kb on - strand, within Psyr_3999 at 4764.138 kb on + strand, within Psyr_3999 at 4764.138 kb on + strand, within Psyr_3999 at 4764.138 kb on + strand, within Psyr_3999 at 4764.138 kb on + strand, within Psyr_3999 at 4764.138 kb on + strand, within Psyr_3999 at 4764.138 kb on + strand, within Psyr_3999 at 4764.138 kb on + strand, within Psyr_3999 at 4764.138 kb on + strand, within Psyr_3999 at 4764.138 kb on + strand, within Psyr_3999 at 4764.139 kb on - strand, within Psyr_3999 at 4764.139 kb on - strand, within Psyr_3999 at 4764.139 kb on - strand, within Psyr_3999 at 4764.139 kb on - strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.147 kb on + strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.148 kb on - strand, within Psyr_3999 at 4764.149 kb on + strand, within Psyr_3999 at 4764.149 kb on + strand, within Psyr_3999 at 4764.149 kb on + strand, within Psyr_3999 at 4764.149 kb on + strand, within Psyr_3999 at 4764.149 kb on + strand, within Psyr_3999 at 4764.149 kb on + strand, within Psyr_3999 at 4764.149 kb on + strand, within Psyr_3999 at 4764.149 kb on + strand, within Psyr_3999 at 4764.149 kb on + strand, within Psyr_3999 at 4764.149 kb on + strand, within Psyr_3999 at 4764.150 kb on - strand, within Psyr_3999 at 4764.150 kb on - strand, within Psyr_3999 at 4764.150 kb on - strand, within Psyr_3999 at 4764.150 kb on - strand, within Psyr_3999 at 4764.159 kb on + strand, within Psyr_3999 at 4764.159 kb on + strand, within Psyr_3999 at 4764.159 kb on + strand, within Psyr_3999 at 4764.160 kb on - strand, within Psyr_3999 at 4764.160 kb on - strand, within Psyr_3999 at 4764.160 kb on - strand, within Psyr_3999 at 4764.160 kb on - strand, within Psyr_3999 at 4764.321 kb on - strand, within Psyr_3999 at 4764.347 kb on + strand, within Psyr_3999 at 4764.348 kb on - strand, within Psyr_3999 at 4764.348 kb on - strand, within Psyr_3999 at 4764.411 kb on + strand, within Psyr_3999 at 4764.411 kb on + strand, within Psyr_3999 at 4764.413 kb on + strand, within Psyr_3999 at 4764.413 kb on + strand, within Psyr_3999 at 4764.413 kb on + strand, within Psyr_3999 at 4764.413 kb on + strand, within Psyr_3999 at 4764.413 kb on + strand, within Psyr_3999 at 4764.413 kb on + strand, within Psyr_3999 at 4764.486 kb on + strand, within Psyr_3999 at 4764.525 kb on + strand, within Psyr_3999 at 4764.526 kb on - strand, within Psyr_3999 at 4764.526 kb on - strand, within Psyr_3999 at 4764.526 kb on - strand, within Psyr_3999 at 4764.567 kb on + strand at 4764.570 kb on + strand at 4764.570 kb on + strand at 4764.570 kb on + strand at 4764.576 kb on + strand at 4764.577 kb on - strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.612 kb on + strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.613 kb on - strand at 4764.706 kb on + strand at 4764.706 kb on + strand at 4764.707 kb on - strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.708 kb on + strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.709 kb on - strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.710 kb on + strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.711 kb on - strand at 4764.775 kb on - strand at 4764.775 kb on - strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.850 kb on + strand at 4764.896 kb on + strand, within Psyr_4000 at 4764.896 kb on + strand, within Psyr_4000 at 4764.896 kb on + strand, within Psyr_4000 at 4764.896 kb on + strand, within Psyr_4000 at 4764.896 kb on + strand, within Psyr_4000 at 4764.896 kb on + strand, within Psyr_4000 at 4764.897 kb on - strand, within Psyr_4000 at 4764.897 kb on - strand, within Psyr_4000 at 4764.897 kb on - strand, within Psyr_4000 at 4764.897 kb on - strand, within Psyr_4000 at 4764.908 kb on + strand, within Psyr_4000 at 4764.926 kb on + strand, within Psyr_4000 at 4764.927 kb on - strand, within Psyr_4000 at 4764.953 kb on + strand, within Psyr_4000 at 4764.954 kb on - strand, within Psyr_4000 at 4764.954 kb on - strand, within Psyr_4000 at 4764.954 kb on - strand, within Psyr_4000 at 4764.954 kb on - strand, within Psyr_4000 at 4764.980 kb on - strand, within Psyr_4000 at 4765.028 kb on - strand, within Psyr_4000 at 4765.061 kb on + strand, within Psyr_4000 at 4765.061 kb on + strand, within Psyr_4000 at 4765.129 kb on - strand at 4765.139 kb on - strand at 4765.169 kb on + strand at 4765.170 kb on - strand at 4765.679 kb on + strand at 4765.680 kb on - strand at 4765.680 kb on - strand at 4765.680 kb on - strand at 4765.680 kb on - strand at 4765.694 kb on + strand at 4765.730 kb on - strand at 4765.739 kb on + strand at 4765.740 kb on - strand at 4765.791 kb on + strand, within Psyr_4002 at 4765.856 kb on + strand, within Psyr_4002 at 4765.856 kb on + strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.933 kb on + strand, within Psyr_4002 at 4765.934 kb on - strand, within Psyr_4002 at 4765.934 kb on - strand, within Psyr_4002
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Emodin 10 mM remove 4,763,844 + Psyr_3999 0.38 +1.0 4,763,845 - Psyr_3999 0.38 -1.1 4,763,925 + Psyr_3999 0.44 +0.4 4,763,926 - Psyr_3999 0.44 +1.2 4,763,926 - Psyr_3999 0.44 +2.2 4,763,926 - Psyr_3999 0.44 +0.9 4,763,926 - Psyr_3999 0.44 -0.0 4,763,926 - Psyr_3999 0.44 -1.0 4,763,926 - Psyr_3999 0.44 -0.5 4,763,926 - Psyr_3999 0.44 +1.7 4,763,926 - Psyr_3999 0.44 -0.1 4,763,926 - Psyr_3999 0.44 -1.2 4,763,926 - Psyr_3999 0.44 -1.7 4,764,132 + Psyr_3999 0.60 +0.3 4,764,133 - Psyr_3999 0.60 -1.8 4,764,138 + Psyr_3999 0.60 -0.3 4,764,138 + Psyr_3999 0.60 +0.3 4,764,138 + Psyr_3999 0.60 +0.3 4,764,138 + Psyr_3999 0.60 +0.5 4,764,138 + Psyr_3999 0.60 -1.6 4,764,138 + Psyr_3999 0.60 -0.1 4,764,138 + Psyr_3999 0.60 +0.4 4,764,138 + Psyr_3999 0.60 +0.5 4,764,138 + Psyr_3999 0.60 -1.8 4,764,139 - Psyr_3999 0.60 +2.5 4,764,139 - Psyr_3999 0.60 +0.9 4,764,139 - Psyr_3999 0.60 +1.0 4,764,139 - Psyr_3999 0.60 +0.7 4,764,147 + Psyr_3999 0.61 -0.2 4,764,147 + Psyr_3999 0.61 -1.1 4,764,147 + Psyr_3999 0.61 -0.1 4,764,147 + Psyr_3999 0.61 -0.3 4,764,147 + Psyr_3999 0.61 -0.7 4,764,147 + Psyr_3999 0.61 -2.8 4,764,147 + Psyr_3999 0.61 -0.2 4,764,147 + Psyr_3999 0.61 +0.5 4,764,147 + Psyr_3999 0.61 -0.5 4,764,147 + Psyr_3999 0.61 -0.3 4,764,147 + Psyr_3999 0.61 -0.5 4,764,147 + Psyr_3999 0.61 +3.2 4,764,147 + Psyr_3999 0.61 -2.0 4,764,147 + Psyr_3999 0.61 +1.3 4,764,147 + Psyr_3999 0.61 -0.9 4,764,147 + Psyr_3999 0.61 +0.1 4,764,147 + Psyr_3999 0.61 +0.2 4,764,147 + Psyr_3999 0.61 +0.4 4,764,147 + Psyr_3999 0.61 +0.9 4,764,148 - Psyr_3999 0.61 -0.4 4,764,148 - Psyr_3999 0.61 -0.1 4,764,148 - Psyr_3999 0.61 -0.0 4,764,148 - Psyr_3999 0.61 +0.7 4,764,148 - Psyr_3999 0.61 -0.1 4,764,148 - Psyr_3999 0.61 -2.0 4,764,148 - Psyr_3999 0.61 +0.4 4,764,148 - Psyr_3999 0.61 -0.2 4,764,148 - Psyr_3999 0.61 +0.2 4,764,148 - Psyr_3999 0.61 +0.2 4,764,148 - Psyr_3999 0.61 +0.3 4,764,148 - Psyr_3999 0.61 +0.6 4,764,148 - Psyr_3999 0.61 -1.5 4,764,148 - Psyr_3999 0.61 -0.5 4,764,148 - Psyr_3999 0.61 -0.6 4,764,148 - Psyr_3999 0.61 +0.3 4,764,148 - Psyr_3999 0.61 -0.3 4,764,148 - Psyr_3999 0.61 -0.3 4,764,148 - Psyr_3999 0.61 -0.6 4,764,148 - Psyr_3999 0.61 +3.6 4,764,148 - Psyr_3999 0.61 -0.7 4,764,148 - Psyr_3999 0.61 +0.9 4,764,148 - Psyr_3999 0.61 +0.6 4,764,149 + Psyr_3999 0.61 -0.3 4,764,149 + Psyr_3999 0.61 +0.1 4,764,149 + Psyr_3999 0.61 -1.6 4,764,149 + Psyr_3999 0.61 +0.2 4,764,149 + Psyr_3999 0.61 +0.9 4,764,149 + Psyr_3999 0.61 +1.2 4,764,149 + Psyr_3999 0.61 -0.8 4,764,149 + Psyr_3999 0.61 +0.3 4,764,149 + Psyr_3999 0.61 +0.6 4,764,149 + Psyr_3999 0.61 +0.6 4,764,150 - Psyr_3999 0.61 -0.8 4,764,150 - Psyr_3999 0.61 +0.9 4,764,150 - Psyr_3999 0.61 -1.6 4,764,150 - Psyr_3999 0.61 +1.0 4,764,159 + Psyr_3999 0.62 -0.5 4,764,159 + Psyr_3999 0.62 -0.2 4,764,159 + Psyr_3999 0.62 -1.9 4,764,160 - Psyr_3999 0.62 -0.6 4,764,160 - Psyr_3999 0.62 -0.5 4,764,160 - Psyr_3999 0.62 +0.9 4,764,160 - Psyr_3999 0.62 +1.8 4,764,321 - Psyr_3999 0.74 +0.4 4,764,347 + Psyr_3999 0.76 +1.0 4,764,348 - Psyr_3999 0.76 +0.1 4,764,348 - Psyr_3999 0.76 -0.4 4,764,411 + Psyr_3999 0.81 +2.5 4,764,411 + Psyr_3999 0.81 +1.2 4,764,413 + Psyr_3999 0.81 -1.4 4,764,413 + Psyr_3999 0.81 +4.6 4,764,413 + Psyr_3999 0.81 -0.9 4,764,413 + Psyr_3999 0.81 -0.7 4,764,413 + Psyr_3999 0.81 -0.3 4,764,413 + Psyr_3999 0.81 -0.4 4,764,486 + Psyr_3999 0.87 -0.8 4,764,525 + Psyr_3999 0.90 +1.3 4,764,526 - Psyr_3999 0.90 +0.9 4,764,526 - Psyr_3999 0.90 -0.3 4,764,526 - Psyr_3999 0.90 -1.7 4,764,567 + -1.7 4,764,570 + +0.3 4,764,570 + +0.9 4,764,570 + -0.8 4,764,576 + +0.7 4,764,577 - -0.3 4,764,612 + +0.9 4,764,612 + +0.6 4,764,612 + +0.0 4,764,612 + -2.8 4,764,612 + +0.0 4,764,612 + +0.4 4,764,612 + -0.3 4,764,612 + +0.6 4,764,612 + -0.8 4,764,612 + -0.4 4,764,612 + -1.8 4,764,612 + -1.5 4,764,612 + +3.9 4,764,613 - +1.7 4,764,613 - +0.3 4,764,613 - +2.0 4,764,613 - +1.0 4,764,613 - +0.2 4,764,613 - +0.2 4,764,613 - +1.1 4,764,706 + +0.1 4,764,706 + +1.0 4,764,707 - +0.1 4,764,708 + -0.7 4,764,708 + -0.4 4,764,708 + -0.9 4,764,708 + +0.1 4,764,708 + -0.3 4,764,708 + +0.2 4,764,708 + +0.5 4,764,708 + -0.6 4,764,709 - +3.4 4,764,709 - -0.5 4,764,709 - +1.6 4,764,709 - -0.5 4,764,709 - -1.1 4,764,710 + -2.4 4,764,710 + -0.8 4,764,710 + -0.9 4,764,710 + +0.6 4,764,710 + +0.5 4,764,710 + +0.2 4,764,710 + +3.1 4,764,710 + +0.3 4,764,710 + +0.1 4,764,710 + +0.3 4,764,710 + -0.1 4,764,711 - -1.4 4,764,711 - -0.1 4,764,711 - -0.4 4,764,711 - -0.0 4,764,711 - -0.7 4,764,775 - -0.8 4,764,775 - -1.6 4,764,848 + -0.3 4,764,848 + +0.2 4,764,848 + +0.9 4,764,848 + -0.6 4,764,848 + -0.1 4,764,848 + +0.0 4,764,848 + -1.4 4,764,848 + +0.3 4,764,848 + -3.1 4,764,849 - -0.8 4,764,849 - +1.4 4,764,849 - +0.1 4,764,849 - +3.0 4,764,849 - -1.1 4,764,849 - -0.6 4,764,849 - +0.2 4,764,850 + -2.3 4,764,896 + Psyr_4000 0.25 +1.7 4,764,896 + Psyr_4000 0.25 -1.0 4,764,896 + Psyr_4000 0.25 -0.5 4,764,896 + Psyr_4000 0.25 +1.3 4,764,896 + Psyr_4000 0.25 -0.5 4,764,896 + Psyr_4000 0.25 +0.6 4,764,897 - Psyr_4000 0.25 +0.8 4,764,897 - Psyr_4000 0.25 -0.9 4,764,897 - Psyr_4000 0.25 -0.7 4,764,897 - Psyr_4000 0.25 -0.7 4,764,908 + Psyr_4000 0.29 -1.3 4,764,926 + Psyr_4000 0.36 -1.9 4,764,927 - Psyr_4000 0.37 -1.4 4,764,953 + Psyr_4000 0.47 +1.7 4,764,954 - Psyr_4000 0.47 -0.1 4,764,954 - Psyr_4000 0.47 +0.7 4,764,954 - Psyr_4000 0.47 -0.1 4,764,954 - Psyr_4000 0.47 -1.2 4,764,980 - Psyr_4000 0.58 -1.8 4,765,028 - Psyr_4000 0.76 -0.6 4,765,061 + Psyr_4000 0.89 +0.0 4,765,061 + Psyr_4000 0.89 -1.3 4,765,129 - -1.3 4,765,139 - -0.7 4,765,169 + -1.9 4,765,170 - +0.7 4,765,679 + -1.1 4,765,680 - -0.8 4,765,680 - -0.3 4,765,680 - -1.4 4,765,680 - -0.3 4,765,694 + +0.2 4,765,730 - -0.1 4,765,739 + +0.9 4,765,740 - +0.8 4,765,791 + Psyr_4002 0.12 -1.0 4,765,856 + Psyr_4002 0.22 -1.2 4,765,856 + Psyr_4002 0.22 +0.1 4,765,857 - Psyr_4002 0.22 +0.2 4,765,857 - Psyr_4002 0.22 +1.9 4,765,857 - Psyr_4002 0.22 +0.5 4,765,880 + Psyr_4002 0.26 -0.3 4,765,880 + Psyr_4002 0.26 +1.2 4,765,880 + Psyr_4002 0.26 -1.8 4,765,880 + Psyr_4002 0.26 +0.0 4,765,881 - Psyr_4002 0.26 +0.1 4,765,881 - Psyr_4002 0.26 -0.4 4,765,881 - Psyr_4002 0.26 +0.1 4,765,881 - Psyr_4002 0.26 -1.4 4,765,881 - Psyr_4002 0.26 -1.7 4,765,881 - Psyr_4002 0.26 +0.7 4,765,881 - Psyr_4002 0.26 -0.7 4,765,933 + Psyr_4002 0.34 +1.1 4,765,934 - Psyr_4002 0.35 +0.5 4,765,934 - Psyr_4002 0.35 -2.2
Or see this region's nucleotide sequence