Experiment: KB with Emodin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3902 and Psyr_3903 are separated by 8 nucleotides Psyr_3903 and Psyr_3904 are separated by 341 nucleotides Psyr_3904 and Psyr_3905 are separated by 59 nucleotides
Psyr_3902: Psyr_3902 - ABC transporter:TOBE, at 4,643,126 to 4,644,199
_3902
Psyr_3903: Psyr_3903 - Conserved hypothetical protein 11, at 4,644,208 to 4,644,678
_3903
Psyr_3904: Psyr_3904 - Major intrinsic protein, at 4,645,020 to 4,645,877
_3904
Psyr_3905: Psyr_3905 - glycerol kinase, at 4,645,937 to 4,647,442
_3905
Position (kb) 4645
4646 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4644.041 kb on + strand, within Psyr_3902 at 4644.042 kb on - strand, within Psyr_3902 at 4644.194 kb on - strand at 4644.244 kb on - strand at 4644.305 kb on + strand, within Psyr_3903 at 4644.305 kb on + strand, within Psyr_3903 at 4644.305 kb on + strand, within Psyr_3903 at 4644.305 kb on + strand, within Psyr_3903 at 4644.305 kb on + strand, within Psyr_3903 at 4644.469 kb on + strand, within Psyr_3903 at 4644.470 kb on - strand, within Psyr_3903 at 4644.470 kb on - strand, within Psyr_3903 at 4644.470 kb on - strand, within Psyr_3903 at 4644.470 kb on - strand, within Psyr_3903 at 4644.470 kb on - strand, within Psyr_3903 at 4644.509 kb on - strand, within Psyr_3903 at 4644.509 kb on - strand, within Psyr_3903 at 4644.620 kb on + strand, within Psyr_3903 at 4644.620 kb on + strand, within Psyr_3903 at 4644.621 kb on - strand, within Psyr_3903 at 4644.621 kb on - strand, within Psyr_3903 at 4644.723 kb on + strand at 4644.797 kb on + strand at 4644.797 kb on + strand at 4644.797 kb on + strand at 4644.798 kb on - strand at 4644.915 kb on + strand at 4644.915 kb on + strand at 4644.915 kb on + strand at 4644.915 kb on + strand at 4644.915 kb on + strand at 4644.916 kb on - strand at 4644.916 kb on - strand at 4645.015 kb on + strand at 4645.033 kb on + strand at 4645.197 kb on + strand, within Psyr_3904 at 4645.197 kb on + strand, within Psyr_3904 at 4645.197 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.293 kb on + strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.294 kb on - strand, within Psyr_3904 at 4645.296 kb on - strand, within Psyr_3904 at 4645.341 kb on + strand, within Psyr_3904 at 4645.341 kb on + strand, within Psyr_3904 at 4645.350 kb on + strand, within Psyr_3904 at 4645.350 kb on + strand, within Psyr_3904 at 4645.350 kb on + strand, within Psyr_3904 at 4645.350 kb on + strand, within Psyr_3904 at 4645.351 kb on - strand, within Psyr_3904 at 4645.351 kb on - strand, within Psyr_3904 at 4645.440 kb on + strand, within Psyr_3904 at 4645.722 kb on + strand, within Psyr_3904 at 4645.722 kb on + strand, within Psyr_3904 at 4645.920 kb on - strand at 4645.961 kb on + strand at 4645.961 kb on + strand at 4645.961 kb on + strand at 4645.961 kb on + strand at 4645.961 kb on + strand at 4645.962 kb on - strand at 4645.962 kb on - strand at 4645.962 kb on - strand at 4645.962 kb on - strand at 4645.962 kb on - strand at 4645.962 kb on - strand at 4645.962 kb on - strand at 4646.240 kb on + strand, within Psyr_3905 at 4646.241 kb on - strand, within Psyr_3905 at 4646.241 kb on - strand, within Psyr_3905 at 4646.315 kb on + strand, within Psyr_3905 at 4646.315 kb on + strand, within Psyr_3905 at 4646.315 kb on + strand, within Psyr_3905 at 4646.315 kb on + strand, within Psyr_3905 at 4646.316 kb on - strand, within Psyr_3905 at 4646.316 kb on - strand, within Psyr_3905 at 4646.316 kb on - strand, within Psyr_3905 at 4646.496 kb on - strand, within Psyr_3905 at 4646.723 kb on + strand, within Psyr_3905 at 4646.723 kb on + strand, within Psyr_3905 at 4646.723 kb on + strand, within Psyr_3905 at 4646.723 kb on + strand, within Psyr_3905 at 4646.724 kb on - strand, within Psyr_3905
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Emodin 10 mM remove 4,644,041 + Psyr_3902 0.85 +0.9 4,644,042 - Psyr_3902 0.85 -1.8 4,644,194 - +0.9 4,644,244 - +0.3 4,644,305 + Psyr_3903 0.21 -0.1 4,644,305 + Psyr_3903 0.21 -1.2 4,644,305 + Psyr_3903 0.21 -1.3 4,644,305 + Psyr_3903 0.21 +0.8 4,644,305 + Psyr_3903 0.21 -0.9 4,644,469 + Psyr_3903 0.55 +1.9 4,644,470 - Psyr_3903 0.56 -0.7 4,644,470 - Psyr_3903 0.56 -1.2 4,644,470 - Psyr_3903 0.56 +1.9 4,644,470 - Psyr_3903 0.56 -0.1 4,644,470 - Psyr_3903 0.56 -1.9 4,644,509 - Psyr_3903 0.64 -2.1 4,644,509 - Psyr_3903 0.64 +0.4 4,644,620 + Psyr_3903 0.87 -2.3 4,644,620 + Psyr_3903 0.87 -1.0 4,644,621 - Psyr_3903 0.88 -0.7 4,644,621 - Psyr_3903 0.88 -1.4 4,644,723 + +0.5 4,644,797 + +1.6 4,644,797 + -0.5 4,644,797 + +0.5 4,644,798 - +1.2 4,644,915 + -0.9 4,644,915 + +2.1 4,644,915 + -2.7 4,644,915 + -1.3 4,644,915 + -0.7 4,644,916 - -1.5 4,644,916 - -1.8 4,645,015 + -1.0 4,645,033 + -0.3 4,645,197 + Psyr_3904 0.21 -1.8 4,645,197 + Psyr_3904 0.21 +1.1 4,645,197 + Psyr_3904 0.21 -2.1 4,645,293 + Psyr_3904 0.32 -1.3 4,645,293 + Psyr_3904 0.32 -1.4 4,645,293 + Psyr_3904 0.32 -1.1 4,645,293 + Psyr_3904 0.32 -1.0 4,645,293 + Psyr_3904 0.32 -0.4 4,645,294 - Psyr_3904 0.32 -2.3 4,645,294 - Psyr_3904 0.32 -4.0 4,645,294 - Psyr_3904 0.32 -1.7 4,645,294 - Psyr_3904 0.32 -3.6 4,645,294 - Psyr_3904 0.32 -0.9 4,645,294 - Psyr_3904 0.32 +2.9 4,645,296 - Psyr_3904 0.32 -3.0 4,645,341 + Psyr_3904 0.37 -2.4 4,645,341 + Psyr_3904 0.37 -0.4 4,645,350 + Psyr_3904 0.38 -1.4 4,645,350 + Psyr_3904 0.38 +0.1 4,645,350 + Psyr_3904 0.38 +0.3 4,645,350 + Psyr_3904 0.38 -1.4 4,645,351 - Psyr_3904 0.39 -3.4 4,645,351 - Psyr_3904 0.39 -3.5 4,645,440 + Psyr_3904 0.49 -2.4 4,645,722 + Psyr_3904 0.82 -2.3 4,645,722 + Psyr_3904 0.82 +0.9 4,645,920 - -1.2 4,645,961 + -3.0 4,645,961 + +0.3 4,645,961 + -0.6 4,645,961 + -1.1 4,645,961 + +1.3 4,645,962 - -0.7 4,645,962 - -1.3 4,645,962 - +0.9 4,645,962 - -1.1 4,645,962 - +0.1 4,645,962 - -2.3 4,645,962 - -0.4 4,646,240 + Psyr_3905 0.20 -0.4 4,646,241 - Psyr_3905 0.20 +1.6 4,646,241 - Psyr_3905 0.20 -0.1 4,646,315 + Psyr_3905 0.25 -2.1 4,646,315 + Psyr_3905 0.25 -1.0 4,646,315 + Psyr_3905 0.25 -0.9 4,646,315 + Psyr_3905 0.25 -1.9 4,646,316 - Psyr_3905 0.25 -3.2 4,646,316 - Psyr_3905 0.25 -2.3 4,646,316 - Psyr_3905 0.25 -2.8 4,646,496 - Psyr_3905 0.37 -0.3 4,646,723 + Psyr_3905 0.52 -2.3 4,646,723 + Psyr_3905 0.52 -1.4 4,646,723 + Psyr_3905 0.52 +0.3 4,646,723 + Psyr_3905 0.52 -2.2 4,646,724 - Psyr_3905 0.52 -2.5
Or see this region's nucleotide sequence