Experiment: KB with Emodin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1549 and Psyr_1550 are separated by 0 nucleotides Psyr_1550 and Psyr_1551 are separated by 28 nucleotides Psyr_1551 and Psyr_RNA25 are separated by 92 nucleotides Psyr_RNA25 and Psyr_1552 are separated by 58 nucleotides
Psyr_1549: Psyr_1549 - lipoprotein, putative, at 1,742,241 to 1,743,359
_1549
Psyr_1550: Psyr_1550 - Beta-lactamase-like protein, at 1,743,360 to 1,744,118
_1550
Psyr_1551: Psyr_1551 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,744,147 to 1,744,857
_1551
Psyr_RNA25: Psyr_RNA25 - tRNA-Ser, at 1,744,950 to 1,745,039
_RNA25
Psyr_1552: Psyr_1552 - CDS, at 1,745,098 to 1,745,496
_1552
Position (kb) 1743
1744
1745 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1742.604 kb on + strand, within Psyr_1549 at 1742.604 kb on + strand, within Psyr_1549 at 1742.799 kb on + strand, within Psyr_1549 at 1742.799 kb on + strand, within Psyr_1549 at 1742.800 kb on - strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.939 kb on + strand, within Psyr_1549 at 1742.940 kb on - strand, within Psyr_1549 at 1743.120 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.123 kb on + strand, within Psyr_1549 at 1743.124 kb on - strand, within Psyr_1549 at 1743.422 kb on + strand at 1743.423 kb on - strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.426 kb on + strand at 1743.427 kb on - strand at 1743.430 kb on + strand at 1743.514 kb on + strand, within Psyr_1550 at 1743.514 kb on + strand, within Psyr_1550 at 1743.588 kb on + strand, within Psyr_1550 at 1743.588 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.796 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1743.799 kb on + strand, within Psyr_1550 at 1744.125 kb on + strand at 1744.125 kb on + strand at 1744.129 kb on + strand at 1744.129 kb on + strand at 1744.129 kb on + strand at 1744.856 kb on - strand at 1744.935 kb on - strand at 1744.996 kb on + strand, within Psyr_RNA25 at 1744.997 kb on - strand, within Psyr_RNA25 at 1745.012 kb on + strand, within Psyr_RNA25 at 1745.040 kb on + strand at 1745.046 kb on + strand at 1745.080 kb on + strand at 1745.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Emodin 10 mM remove 1,742,604 + Psyr_1549 0.32 -1.7 1,742,604 + Psyr_1549 0.32 -1.3 1,742,799 + Psyr_1549 0.50 -1.3 1,742,799 + Psyr_1549 0.50 -1.8 1,742,800 - Psyr_1549 0.50 -0.6 1,742,939 + Psyr_1549 0.62 -0.6 1,742,939 + Psyr_1549 0.62 +0.6 1,742,939 + Psyr_1549 0.62 -1.4 1,742,939 + Psyr_1549 0.62 +0.1 1,742,939 + Psyr_1549 0.62 -0.7 1,742,940 - Psyr_1549 0.62 +2.0 1,743,120 + Psyr_1549 0.79 -2.7 1,743,123 + Psyr_1549 0.79 +3.4 1,743,123 + Psyr_1549 0.79 -0.5 1,743,123 + Psyr_1549 0.79 +2.0 1,743,123 + Psyr_1549 0.79 +1.2 1,743,123 + Psyr_1549 0.79 +1.0 1,743,123 + Psyr_1549 0.79 +0.7 1,743,123 + Psyr_1549 0.79 -0.9 1,743,123 + Psyr_1549 0.79 -1.4 1,743,123 + Psyr_1549 0.79 +0.7 1,743,124 - Psyr_1549 0.79 -0.5 1,743,422 + -1.2 1,743,423 - +0.6 1,743,426 + -0.2 1,743,426 + +1.0 1,743,426 + +1.0 1,743,426 + +1.0 1,743,426 + -2.1 1,743,426 + +1.6 1,743,426 + +0.4 1,743,426 + -0.9 1,743,426 + -0.1 1,743,426 + +0.1 1,743,426 + -1.0 1,743,426 + -0.2 1,743,426 + +0.5 1,743,426 + +1.1 1,743,426 + +0.3 1,743,427 - +0.6 1,743,430 + +0.6 1,743,514 + Psyr_1550 0.20 +0.1 1,743,514 + Psyr_1550 0.20 -0.9 1,743,588 + Psyr_1550 0.30 +1.0 1,743,588 + Psyr_1550 0.30 +1.0 1,743,796 + Psyr_1550 0.57 -0.5 1,743,796 + Psyr_1550 0.57 -1.1 1,743,796 + Psyr_1550 0.57 -1.7 1,743,796 + Psyr_1550 0.57 -0.5 1,743,796 + Psyr_1550 0.57 -0.0 1,743,796 + Psyr_1550 0.57 -0.9 1,743,796 + Psyr_1550 0.57 +0.4 1,743,799 + Psyr_1550 0.58 -0.1 1,743,799 + Psyr_1550 0.58 -0.6 1,744,125 + -1.0 1,744,125 + -0.5 1,744,129 + -0.0 1,744,129 + -0.2 1,744,129 + +0.3 1,744,856 - +0.8 1,744,935 - +1.0 1,744,996 + Psyr_RNA25 0.51 -1.2 1,744,997 - Psyr_RNA25 0.52 +0.4 1,745,012 + Psyr_RNA25 0.69 -1.8 1,745,040 + +1.0 1,745,046 + +1.1 1,745,080 + -0.9 1,745,114 - -1.0
Or see this region's nucleotide sequence