Experiment: D-Lysine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4858 and PP_4859 are separated by 122 nucleotides PP_4859 and PP_4860 are separated by 19 nucleotides PP_4860 and PP_4861 are separated by 102 nucleotides PP_4861 and PP_4862 are separated by 49 nucleotides
PP_4858: PP_4858 - conserved exported protein of unknown function, at 5,525,213 to 5,525,710
_4858
PP_4859: PP_4859 - Transcriptional regulator, TetR family, at 5,525,833 to 5,526,468
_4859
PP_4860: PP_4860 - putative Mannose-6-phosphate isomerase, at 5,526,488 to 5,527,621
_4860
PP_4861: PP_4861 - conserved protein of unknown function, at 5,527,724 to 5,527,972
_4861
PP_4862: PP_4862 - 3-hydroxy acid dehydrogenase, NADP-dependent / malonic semialdehyde reductase, at 5,528,022 to 5,528,786
_4862
Position (kb) 5526
5527
5528 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5525.796 kb on + strand at 5525.858 kb on + strand at 5525.858 kb on + strand at 5525.858 kb on + strand at 5525.859 kb on - strand at 5526.128 kb on + strand, within PP_4859 at 5526.128 kb on + strand, within PP_4859 at 5526.223 kb on - strand, within PP_4859 at 5526.346 kb on - strand, within PP_4859 at 5526.484 kb on + strand at 5526.635 kb on + strand, within PP_4860 at 5526.711 kb on - strand, within PP_4860 at 5526.818 kb on + strand, within PP_4860 at 5526.819 kb on - strand, within PP_4860 at 5526.819 kb on - strand, within PP_4860 at 5526.866 kb on + strand, within PP_4860 at 5526.866 kb on + strand, within PP_4860 at 5526.866 kb on + strand, within PP_4860 at 5526.866 kb on + strand, within PP_4860 at 5526.866 kb on + strand, within PP_4860 at 5526.867 kb on - strand, within PP_4860 at 5526.867 kb on - strand, within PP_4860 at 5526.869 kb on - strand, within PP_4860 at 5526.903 kb on - strand, within PP_4860 at 5526.903 kb on - strand, within PP_4860 at 5526.995 kb on + strand, within PP_4860 at 5526.995 kb on + strand, within PP_4860 at 5526.996 kb on - strand, within PP_4860 at 5527.086 kb on + strand, within PP_4860 at 5527.087 kb on - strand, within PP_4860 at 5527.087 kb on - strand, within PP_4860 at 5527.210 kb on + strand, within PP_4860 at 5527.247 kb on + strand, within PP_4860 at 5527.247 kb on + strand, within PP_4860 at 5527.248 kb on - strand, within PP_4860 at 5527.248 kb on - strand, within PP_4860 at 5527.258 kb on + strand, within PP_4860 at 5527.258 kb on + strand, within PP_4860 at 5527.258 kb on + strand, within PP_4860 at 5527.258 kb on + strand, within PP_4860 at 5527.258 kb on + strand, within PP_4860 at 5527.259 kb on - strand, within PP_4860 at 5527.299 kb on + strand, within PP_4860 at 5527.299 kb on + strand, within PP_4860 at 5527.299 kb on + strand, within PP_4860 at 5527.300 kb on - strand, within PP_4860 at 5527.300 kb on - strand, within PP_4860 at 5527.300 kb on - strand, within PP_4860 at 5527.300 kb on - strand, within PP_4860 at 5527.300 kb on - strand, within PP_4860 at 5527.399 kb on + strand, within PP_4860 at 5527.399 kb on + strand, within PP_4860 at 5527.400 kb on - strand, within PP_4860 at 5527.400 kb on - strand, within PP_4860 at 5527.419 kb on - strand, within PP_4860 at 5527.432 kb on + strand, within PP_4860 at 5527.432 kb on + strand, within PP_4860 at 5527.433 kb on - strand, within PP_4860 at 5527.433 kb on - strand, within PP_4860 at 5527.433 kb on - strand, within PP_4860 at 5527.514 kb on + strand at 5527.515 kb on - strand at 5527.515 kb on - strand at 5527.515 kb on - strand at 5527.586 kb on - strand at 5527.619 kb on + strand at 5527.619 kb on + strand at 5527.620 kb on - strand at 5527.620 kb on - strand at 5527.620 kb on - strand at 5527.626 kb on + strand at 5527.627 kb on - strand at 5527.627 kb on - strand at 5527.627 kb on - strand at 5527.683 kb on + strand at 5527.683 kb on + strand at 5527.684 kb on - strand at 5527.716 kb on + strand at 5527.717 kb on - strand at 5527.717 kb on - strand at 5527.785 kb on + strand, within PP_4861 at 5527.785 kb on + strand, within PP_4861 at 5527.786 kb on - strand, within PP_4861 at 5527.786 kb on - strand, within PP_4861 at 5527.806 kb on - strand, within PP_4861 at 5527.836 kb on - strand, within PP_4861 at 5527.842 kb on + strand, within PP_4861 at 5527.842 kb on + strand, within PP_4861 at 5527.842 kb on + strand, within PP_4861 at 5527.843 kb on - strand, within PP_4861 at 5527.843 kb on - strand, within PP_4861 at 5527.926 kb on + strand, within PP_4861 at 5527.957 kb on + strand at 5527.957 kb on + strand at 5527.957 kb on + strand at 5527.957 kb on + strand at 5527.957 kb on + strand at 5527.958 kb on - strand at 5527.958 kb on - strand at 5527.961 kb on + strand at 5527.962 kb on - strand at 5527.962 kb on - strand at 5527.963 kb on + strand at 5527.963 kb on + strand at 5527.963 kb on + strand at 5528.017 kb on + strand at 5528.017 kb on + strand at 5528.018 kb on - strand at 5528.023 kb on + strand at 5528.023 kb on + strand at 5528.023 kb on + strand at 5528.024 kb on - strand at 5528.024 kb on - strand at 5528.091 kb on + strand at 5528.142 kb on - strand, within PP_4862 at 5528.177 kb on + strand, within PP_4862 at 5528.177 kb on + strand, within PP_4862 at 5528.185 kb on + strand at 5528.185 kb on + strand, within PP_4862 at 5528.185 kb on + strand, within PP_4862 at 5528.185 kb on + strand, within PP_4862 at 5528.186 kb on - strand, within PP_4862 at 5528.333 kb on - strand, within PP_4862 at 5528.333 kb on - strand, within PP_4862 at 5528.356 kb on + strand, within PP_4862 at 5528.356 kb on + strand, within PP_4862 at 5528.356 kb on + strand, within PP_4862 at 5528.356 kb on + strand, within PP_4862 at 5528.356 kb on + strand, within PP_4862 at 5528.357 kb on - strand, within PP_4862 at 5528.357 kb on - strand, within PP_4862 at 5528.357 kb on - strand, within PP_4862 at 5528.357 kb on - strand, within PP_4862 at 5528.440 kb on + strand, within PP_4862 at 5528.440 kb on + strand, within PP_4862 at 5528.440 kb on + strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.441 kb on - strand, within PP_4862 at 5528.582 kb on + strand, within PP_4862 at 5528.582 kb on + strand, within PP_4862 at 5528.582 kb on + strand, within PP_4862 at 5528.582 kb on + strand, within PP_4862 at 5528.583 kb on - strand, within PP_4862
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lysine 10 mM (C) remove 5,525,796 + -0.3 5,525,858 + -0.0 5,525,858 + -0.2 5,525,858 + -0.8 5,525,859 - -0.3 5,526,128 + PP_4859 0.46 -0.2 5,526,128 + PP_4859 0.46 -0.2 5,526,223 - PP_4859 0.61 +1.1 5,526,346 - PP_4859 0.81 -0.4 5,526,484 + +1.1 5,526,635 + PP_4860 0.13 +0.1 5,526,711 - PP_4860 0.20 -0.4 5,526,818 + PP_4860 0.29 -4.1 5,526,819 - PP_4860 0.29 -2.0 5,526,819 - PP_4860 0.29 -0.8 5,526,866 + PP_4860 0.33 -2.6 5,526,866 + PP_4860 0.33 -0.5 5,526,866 + PP_4860 0.33 -2.9 5,526,866 + PP_4860 0.33 -0.5 5,526,866 + PP_4860 0.33 -1.1 5,526,867 - PP_4860 0.33 -1.4 5,526,867 - PP_4860 0.33 -2.1 5,526,869 - PP_4860 0.34 -0.3 5,526,903 - PP_4860 0.37 -0.9 5,526,903 - PP_4860 0.37 -1.1 5,526,995 + PP_4860 0.45 -1.5 5,526,995 + PP_4860 0.45 -4.1 5,526,996 - PP_4860 0.45 -1.2 5,527,086 + PP_4860 0.53 -1.1 5,527,087 - PP_4860 0.53 +0.0 5,527,087 - PP_4860 0.53 -2.2 5,527,210 + PP_4860 0.64 -1.2 5,527,247 + PP_4860 0.67 -1.6 5,527,247 + PP_4860 0.67 -3.0 5,527,248 - PP_4860 0.67 -1.5 5,527,248 - PP_4860 0.67 -2.2 5,527,258 + PP_4860 0.68 -2.9 5,527,258 + PP_4860 0.68 -0.8 5,527,258 + PP_4860 0.68 -1.4 5,527,258 + PP_4860 0.68 -0.4 5,527,258 + PP_4860 0.68 -2.7 5,527,259 - PP_4860 0.68 -0.4 5,527,299 + PP_4860 0.72 -0.6 5,527,299 + PP_4860 0.72 -1.2 5,527,299 + PP_4860 0.72 -0.3 5,527,300 - PP_4860 0.72 -2.9 5,527,300 - PP_4860 0.72 +0.8 5,527,300 - PP_4860 0.72 -0.9 5,527,300 - PP_4860 0.72 -0.3 5,527,300 - PP_4860 0.72 -2.2 5,527,399 + PP_4860 0.80 -3.2 5,527,399 + PP_4860 0.80 -1.4 5,527,400 - PP_4860 0.80 -1.9 5,527,400 - PP_4860 0.80 -1.5 5,527,419 - PP_4860 0.82 -0.3 5,527,432 + PP_4860 0.83 -3.1 5,527,432 + PP_4860 0.83 -2.3 5,527,433 - PP_4860 0.83 -1.5 5,527,433 - PP_4860 0.83 +0.1 5,527,433 - PP_4860 0.83 -1.6 5,527,514 + -0.6 5,527,515 - -1.4 5,527,515 - -2.0 5,527,515 - -2.6 5,527,586 - -3.3 5,527,619 + +1.7 5,527,619 + -2.4 5,527,620 - +0.2 5,527,620 - -0.2 5,527,620 - +1.6 5,527,626 + +1.0 5,527,627 - +0.1 5,527,627 - -0.9 5,527,627 - -1.3 5,527,683 + -0.3 5,527,683 + -0.5 5,527,684 - -0.6 5,527,716 + +0.3 5,527,717 - +0.7 5,527,717 - +0.4 5,527,785 + PP_4861 0.24 -0.2 5,527,785 + PP_4861 0.24 +1.4 5,527,786 - PP_4861 0.25 -0.8 5,527,786 - PP_4861 0.25 -1.1 5,527,806 - PP_4861 0.33 +0.2 5,527,836 - PP_4861 0.45 -1.0 5,527,842 + PP_4861 0.47 +0.2 5,527,842 + PP_4861 0.47 +0.9 5,527,842 + PP_4861 0.47 -0.4 5,527,843 - PP_4861 0.48 -0.9 5,527,843 - PP_4861 0.48 +1.7 5,527,926 + PP_4861 0.81 +0.0 5,527,957 + -1.5 5,527,957 + +1.1 5,527,957 + -1.6 5,527,957 + -0.1 5,527,957 + +1.3 5,527,958 - +0.2 5,527,958 - +0.2 5,527,961 + -1.5 5,527,962 - -0.4 5,527,962 - -0.1 5,527,963 + +0.3 5,527,963 + +0.1 5,527,963 + -1.4 5,528,017 + -2.0 5,528,017 + +0.4 5,528,018 - +0.4 5,528,023 + +0.5 5,528,023 + +0.7 5,528,023 + +0.2 5,528,024 - -0.3 5,528,024 - -2.1 5,528,091 + +0.3 5,528,142 - PP_4862 0.16 -2.9 5,528,177 + PP_4862 0.20 +0.2 5,528,177 + PP_4862 0.20 -1.3 5,528,185 + +2.0 5,528,185 + PP_4862 0.21 +0.4 5,528,185 + PP_4862 0.21 +0.4 5,528,185 + PP_4862 0.21 +0.4 5,528,186 - PP_4862 0.21 +0.0 5,528,333 - PP_4862 0.41 +0.9 5,528,333 - PP_4862 0.41 -1.5 5,528,356 + PP_4862 0.44 -0.8 5,528,356 + PP_4862 0.44 +0.7 5,528,356 + PP_4862 0.44 +1.2 5,528,356 + PP_4862 0.44 +1.7 5,528,356 + PP_4862 0.44 +0.1 5,528,357 - PP_4862 0.44 +0.6 5,528,357 - PP_4862 0.44 +0.4 5,528,357 - PP_4862 0.44 -0.4 5,528,357 - PP_4862 0.44 +0.7 5,528,440 + PP_4862 0.55 -1.3 5,528,440 + PP_4862 0.55 -2.9 5,528,440 + PP_4862 0.55 +0.4 5,528,441 - PP_4862 0.55 -0.1 5,528,441 - PP_4862 0.55 -0.5 5,528,441 - PP_4862 0.55 +0.3 5,528,441 - PP_4862 0.55 -1.4 5,528,441 - PP_4862 0.55 +0.5 5,528,441 - PP_4862 0.55 +0.7 5,528,441 - PP_4862 0.55 -1.8 5,528,582 + PP_4862 0.73 +1.4 5,528,582 + PP_4862 0.73 +0.9 5,528,582 + PP_4862 0.73 +0.1 5,528,582 + PP_4862 0.73 -0.2 5,528,583 - PP_4862 0.73 +0.7
Or see this region's nucleotide sequence