Strain Fitness in Pseudomonas putida KT2440 around PP_3692

Experiment: DL-2-Aminoadipic 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	DL-2-Aminoadipic 10 mM (C)
4,207,076	+		PP_3691	0.89	+0.3
4,207,097	+		PP_3691	0.90	+1.0
4,207,098	-		PP_3691	0.90	+0.3
4,207,144	+				+0.7
4,207,144	+				+0.7
4,207,144	+				+0.0
4,207,145	-				-1.0
4,207,145	-				-0.2
4,207,145	-				+0.3
4,207,145	-				+0.8
4,207,145	-				+0.0
4,207,145	-				-0.1
4,207,145	-				+0.5
4,207,219	+				+0.8
4,207,335	-				+1.4
4,207,374	+				+0.2
4,207,374	+				+1.1
4,207,389	-				-0.2
4,207,481	+				-0.4
4,207,481	+				+0.3
4,207,481	+				-0.5
4,207,497	+				+0.8
4,207,561	-				+0.0
4,207,794	+				+1.4
4,207,795	-				+0.5
4,207,795	-				+0.1
4,207,860	-				+0.3
4,207,860	-				+0.3
4,207,860	-				+1.5
4,207,901	+				-0.1
4,207,959	+				+1.3
4,207,959	+				+1.7
4,207,959	+				+0.3
4,207,959	+				-0.8
4,207,995	-				-0.0
4,207,995	-				+0.2
4,208,018	+				-0.5
4,208,019	-				-0.8
4,208,069	+				-0.4
4,208,069	+				-0.1
4,208,070	-				+0.3
4,208,070	-				-0.2
4,208,070	-				+0.2
4,208,071	+				+0.5
4,208,071	+				+0.7
4,208,071	+				-0.4
4,208,071	+				+0.8
4,208,071	+				+0.8
4,208,071	+				-1.0
4,208,071	+				+0.5
4,208,071	+				+0.8
4,208,072	-				+0.3
4,208,089	+				-0.4
4,208,096	+				-0.4
4,208,128	+				+0.5
4,208,128	+				+0.2
4,208,128	+				+0.4
4,208,129	-				+0.6
4,208,194	+				+1.0
4,208,194	+				+0.6
4,208,272	+				-0.1
4,208,325	+		PP_3692	0.10	-0.0
4,208,325	+		PP_3692	0.10	+0.0
4,208,325	+		PP_3692	0.10	+0.4
4,208,326	-		PP_3692	0.10	+0.5
4,208,326	-		PP_3692	0.10	+0.0
4,208,326	-		PP_3692	0.10	-0.3
4,208,326	-		PP_3692	0.10	+0.5
4,208,328	+		PP_3692	0.10	-0.1
4,208,328	+		PP_3692	0.10	+0.9
4,208,328	+		PP_3692	0.10	+0.9
4,208,391	+		PP_3692	0.13	-0.4
4,208,392	-		PP_3692	0.13	+0.9
4,208,392	-		PP_3692	0.13	+0.9
4,208,459	+		PP_3692	0.15	+0.9
4,208,459	+		PP_3692	0.15	+0.2
4,208,460	-		PP_3692	0.15	+0.0
4,208,460	-		PP_3692	0.15	+0.9
4,208,511	+		PP_3692	0.17	-1.8
4,208,511	+		PP_3692	0.17	+0.7
4,208,511	+		PP_3692	0.17	+0.8
4,208,511	+		PP_3692	0.17	+1.7
4,208,512	-		PP_3692	0.17	-0.0
4,208,512	-		PP_3692	0.17	-0.3
4,208,512	-		PP_3692	0.17	-0.5
4,208,512	-		PP_3692	0.17	+0.4
4,208,512	-		PP_3692	0.17	-0.0
4,208,512	-		PP_3692	0.17	+0.6
4,208,538	+		PP_3692	0.18	-0.0
4,208,550	+		PP_3692	0.19	-0.1
4,208,550	+		PP_3692	0.19	+0.1
4,208,550	+		PP_3692	0.19	+0.4
4,208,551	-		PP_3692	0.19	+0.3
4,208,551	-		PP_3692	0.19	+0.2
4,208,677	+		PP_3692	0.24	+0.4
4,208,677	+		PP_3692	0.24	-0.8
4,208,678	-		PP_3692	0.24	+1.4
4,208,680	+		PP_3692	0.24	+0.4
4,208,680	+		PP_3692	0.24	+0.1
4,208,681	-		PP_3692	0.24	+1.3
4,208,696	+		PP_3692	0.24	+2.7
4,208,696	+		PP_3692	0.24	-0.0
4,208,696	+		PP_3692	0.24	+1.0
4,208,696	+		PP_3692	0.24	+0.3
4,208,696	+		PP_3692	0.24	-0.8
4,208,697	-		PP_3692	0.24	+0.3
4,208,697	-		PP_3692	0.24	-0.4
4,208,697	-		PP_3692	0.24	+0.8
4,208,697	-		PP_3692	0.24	+0.0
4,208,697	-		PP_3692	0.24	+1.9
4,208,720	+		PP_3692	0.25	-0.6
4,208,720	+		PP_3692	0.25	+0.6
4,208,721	-		PP_3692	0.25	+0.5
4,208,721	-		PP_3692	0.25	+0.1
4,208,721	-		PP_3692	0.25	+0.2
4,208,825	-		PP_3692	0.29	-0.2
4,208,829	+		PP_3692	0.29	+0.7
4,208,829	+		PP_3692	0.29	+0.9
4,208,829	+		PP_3692	0.29	-0.8
4,208,830	-		PP_3692	0.29	-0.1
4,208,830	-		PP_3692	0.29	-0.2
4,208,869	-		PP_3692	0.31	+0.1
4,208,908	+		PP_3692	0.32	+0.9
4,208,922	-		PP_3692	0.33	-0.1
4,209,010	-		PP_3692	0.36	-1.7
4,209,010	-		PP_3692	0.36	+1.2
4,209,090	+		PP_3692	0.39	+0.8
4,209,090	+		PP_3692	0.39	+1.2
4,209,224	+		PP_3692	0.44	+0.3
4,209,224	+		PP_3692	0.44	+0.4
4,209,225	-		PP_3692	0.44	-0.1
4,209,225	-		PP_3692	0.44	+0.1
4,209,406	+		PP_3692	0.51	+0.3
4,209,407	-		PP_3692	0.51	+0.6
4,209,407	-		PP_3692	0.51	+0.6
4,209,454	+		PP_3692	0.53	+1.0
4,209,454	+		PP_3692	0.53	-0.3
4,209,454	+		PP_3692	0.53	-1.2
4,209,454	+		PP_3692	0.53	+1.0
4,209,455	-		PP_3692	0.53	+0.3
4,209,455	-		PP_3692	0.53	+0.3
4,209,455	-		PP_3692	0.53	+0.5
4,209,455	-		PP_3692	0.53	-0.3
4,209,455	-		PP_3692	0.53	+0.0
4,209,502	+		PP_3692	0.54	+0.6
4,209,503	-		PP_3692	0.54	+0.9
4,209,503	-		PP_3692	0.54	+1.0
4,209,503	-		PP_3692	0.54	+0.4
4,209,508	+		PP_3692	0.55	-0.1
4,209,509	-		PP_3692	0.55	-0.4
4,209,759	+		PP_3692	0.64	+0.3
4,209,851	+		PP_3692	0.67	+0.0
4,209,851	+		PP_3692	0.67	+0.9
4,209,852	-		PP_3692	0.67	-0.6
4,209,882	+		PP_3692	0.69	+0.3
4,209,882	+		PP_3692	0.69	+0.3
4,209,883	-		PP_3692	0.69	+0.2
4,209,883	-		PP_3692	0.69	-0.4
4,209,883	-		PP_3692	0.69	+0.5
4,209,885	+		PP_3692	0.69	-0.3
4,209,961	-		PP_3692	0.71	-0.3
4,209,961	-		PP_3692	0.71	+0.0
4,209,961	-		PP_3692	0.71	+0.0
4,210,000	-		PP_3692	0.73	-0.2
4,210,000	-		PP_3692	0.73	-0.0
4,210,020	+		PP_3692	0.74	+0.8
4,210,020	+		PP_3692	0.74	-0.0
4,210,020	+		PP_3692	0.74	+0.0
4,210,021	-		PP_3692	0.74	+0.4
4,210,079	-		PP_3692	0.76	+0.3
4,210,104	+		PP_3692	0.77	+0.1
4,210,104	+		PP_3692	0.77	+0.3
4,210,104	+		PP_3692	0.77	+1.3
4,210,149	+		PP_3692	0.79	+1.7
4,210,280	-		PP_3692	0.83	+0.3
4,210,291	+				+1.9
4,210,352	+		PP_3692	0.86	-0.1
4,210,353	-		PP_3692	0.86	-0.5
4,210,415	+		PP_3692	0.88	-0.1
4,210,415	+		PP_3692	0.88	+1.3
4,210,415	+		PP_3692	0.88	+0.7
4,210,415	+		PP_3692	0.88	+0.1
4,210,415	+		PP_3692	0.88	+0.8
4,210,416	-		PP_3692	0.88	+0.0
4,210,500	+				-0.3
4,210,501	-				-0.1
4,210,525	+				-0.8
4,210,543	+				+0.6
4,210,543	+				-0.1
4,210,543	+				+0.5
4,210,544	-				-0.9
4,210,544	-				+0.3
4,210,544	-				+0.0
4,210,544	-				+0.6
4,210,602	-				+0.8
4,210,656	+				+1.5
4,210,656	+				+0.4
4,210,690	+				+1.1
4,210,690	+				-0.2
4,210,691	-				-0.3
4,210,721	+				-0.0
4,210,721	+				-0.2
4,210,721	+				-0.4
4,210,722	-				+0.4
4,210,722	-				+0.1
4,210,729	+				+0.4
4,210,730	-				-0.5
4,210,773	-				-0.3
4,210,789	+				-0.9
4,210,789	+				-0.2
4,210,789	+				+0.4
4,210,790	-				+0.0
4,210,790	-				+0.1
4,210,790	-				-1.0
4,210,790	-				+1.2
4,210,790	-				-0.3
4,210,819	+				+0.8
4,210,820	-				+0.8
4,210,820	-				-0.9
4,210,843	-		PP_5621	0.18	+0.8
4,211,029	-		PP_5621	0.83	-0.2
4,211,029	-		PP_5621	0.83	+1.1
4,211,066	+				+0.1
4,211,066	+				-2.0
4,211,066	+				-0.8
4,211,093	-				+0.1
4,211,103	+				+0.7
4,211,116	+				-0.5
4,211,131	+				-1.0
4,211,164	-		PP_3693	0.10	+1.0
4,211,241	+		PP_3693	0.31	+0.8
4,211,250	-		PP_3693	0.34	+1.0
4,211,330	+		PP_3693	0.56	+0.2
4,211,331	-		PP_3693	0.56	+0.4
4,211,352	+		PP_3693	0.62	-0.4
4,211,352	+		PP_3693	0.62	-1.1
4,211,353	-		PP_3693	0.62	-0.0
4,211,492	+				+0.4
4,211,492	+				+1.9
4,211,493	-				+0.3
4,211,510	+				+0.2
4,211,511	-				-0.9
4,211,522	+				-0.4
4,211,620	+				+0.1
4,211,620	+				-0.6
4,211,621	-				+1.9
4,211,629	-				+1.3
4,211,629	-				+0.9
4,211,637	+				+1.3
4,211,637	+				-0.3
4,211,645	+				+1.1
4,211,678	-				+0.1
4,211,678	-				-0.7
4,211,678	-				-0.5
4,211,683	+				+0.8
4,211,683	+				+1.0
4,211,683	+				-0.8
4,211,688	-				+1.0
4,211,688	-				-0.0