Experiment: DL-2-Aminoadipic 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0015 and PP_0016 are separated by 75 nucleotides PP_0016 and PP_0017 are separated by 56 nucleotides
PP_0015: PP_0015 - putative transposon protein, at 19,163 to 20,122
_0015
PP_0016: PP_0016 - conserved hypothetical protein, at 20,198 to 22,114
_0016
PP_0017: PP_0017 - putative transcriptional regulator, at 22,171 to 22,530
_0017
Position (kb) 20
21
22
23 Strain fitness (log2 ratio) -1
0
1
2 at 19.205 kb on + strand at 19.205 kb on + strand at 19.206 kb on - strand at 19.206 kb on - strand at 19.206 kb on - strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.214 kb on - strand at 19.231 kb on + strand at 19.232 kb on - strand at 19.269 kb on + strand, within PP_0015 at 19.270 kb on - strand, within PP_0015 at 19.309 kb on + strand, within PP_0015 at 19.309 kb on + strand, within PP_0015 at 19.310 kb on - strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.368 kb on - strand, within PP_0015 at 19.368 kb on - strand, within PP_0015 at 19.529 kb on - strand, within PP_0015 at 19.529 kb on - strand, within PP_0015 at 19.542 kb on + strand, within PP_0015 at 19.543 kb on - strand, within PP_0015 at 19.610 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.628 kb on + strand, within PP_0015 at 19.628 kb on + strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.672 kb on + strand, within PP_0015 at 19.720 kb on - strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.860 kb on + strand, within PP_0015 at 19.876 kb on + strand, within PP_0015 at 19.877 kb on - strand, within PP_0015 at 19.877 kb on - strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.887 kb on - strand, within PP_0015 at 19.898 kb on + strand, within PP_0015 at 19.913 kb on + strand, within PP_0015 at 19.913 kb on + strand, within PP_0015 at 19.914 kb on - strand at 20.021 kb on + strand, within PP_0015 at 20.021 kb on + strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.116 kb on + strand at 20.116 kb on + strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.154 kb on + strand at 20.170 kb on - strand at 20.170 kb on - strand at 20.170 kb on - strand at 20.193 kb on + strand at 20.194 kb on - strand at 20.194 kb on - strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.212 kb on - strand at 20.212 kb on - strand at 20.212 kb on - strand at 20.252 kb on + strand at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.447 kb on + strand, within PP_0016 at 20.596 kb on + strand, within PP_0016 at 20.597 kb on - strand, within PP_0016 at 20.659 kb on + strand, within PP_0016 at 20.659 kb on + strand, within PP_0016 at 20.700 kb on - strand, within PP_0016 at 20.745 kb on - strand, within PP_0016 at 20.838 kb on + strand, within PP_0016 at 20.844 kb on + strand, within PP_0016 at 20.854 kb on + strand, within PP_0016 at 20.855 kb on - strand, within PP_0016 at 20.855 kb on - strand, within PP_0016 at 20.979 kb on + strand, within PP_0016 at 20.980 kb on - strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 21.075 kb on + strand, within PP_0016 at 21.168 kb on + strand, within PP_0016 at 21.169 kb on - strand, within PP_0016 at 21.241 kb on + strand, within PP_0016 at 21.241 kb on + strand, within PP_0016 at 21.241 kb on + strand, within PP_0016 at 21.241 kb on + strand, within PP_0016 at 21.242 kb on - strand, within PP_0016 at 21.242 kb on - strand, within PP_0016 at 21.324 kb on + strand, within PP_0016 at 21.325 kb on - strand, within PP_0016 at 21.325 kb on - strand, within PP_0016 at 21.357 kb on + strand, within PP_0016 at 21.357 kb on + strand, within PP_0016 at 21.357 kb on + strand, within PP_0016 at 21.358 kb on - strand, within PP_0016 at 21.358 kb on - strand, within PP_0016 at 21.368 kb on - strand, within PP_0016 at 21.460 kb on + strand, within PP_0016 at 21.495 kb on - strand, within PP_0016 at 21.495 kb on - strand, within PP_0016 at 21.495 kb on - strand, within PP_0016 at 21.497 kb on - strand, within PP_0016 at 21.552 kb on + strand, within PP_0016 at 21.552 kb on + strand, within PP_0016 at 21.552 kb on + strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.553 kb on - strand, within PP_0016 at 21.575 kb on + strand, within PP_0016 at 21.575 kb on + strand, within PP_0016 at 21.618 kb on + strand, within PP_0016 at 21.619 kb on - strand, within PP_0016 at 21.717 kb on + strand, within PP_0016 at 21.718 kb on - strand, within PP_0016 at 21.718 kb on - strand, within PP_0016 at 21.718 kb on - strand, within PP_0016 at 21.740 kb on + strand, within PP_0016 at 21.740 kb on + strand, within PP_0016 at 21.765 kb on + strand, within PP_0016 at 21.766 kb on - strand, within PP_0016 at 21.811 kb on + strand, within PP_0016 at 21.811 kb on + strand, within PP_0016 at 21.812 kb on - strand, within PP_0016 at 21.812 kb on - strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.845 kb on + strand, within PP_0016 at 21.846 kb on - strand, within PP_0016 at 21.846 kb on - strand, within PP_0016 at 21.846 kb on - strand, within PP_0016 at 21.846 kb on - strand, within PP_0016 at 21.847 kb on + strand, within PP_0016 at 21.847 kb on + strand, within PP_0016 at 21.848 kb on - strand, within PP_0016 at 21.872 kb on + strand, within PP_0016 at 21.872 kb on + strand, within PP_0016 at 21.972 kb on - strand at 21.972 kb on - strand at 22.005 kb on - strand at 22.112 kb on + strand at 22.117 kb on - strand at 22.117 kb on - strand at 22.140 kb on + strand at 22.170 kb on + strand at 22.170 kb on + strand at 22.170 kb on + strand at 22.170 kb on + strand at 22.171 kb on - strand at 22.171 kb on - strand at 22.171 kb on - strand at 22.171 kb on - strand at 22.171 kb on - strand at 22.171 kb on - strand at 22.309 kb on + strand, within PP_0017 at 22.309 kb on + strand, within PP_0017 at 22.371 kb on + strand, within PP_0017 at 22.371 kb on + strand, within PP_0017 at 22.406 kb on + strand, within PP_0017 at 22.406 kb on + strand, within PP_0017 at 22.407 kb on - strand, within PP_0017 at 22.407 kb on - strand, within PP_0017 at 22.415 kb on - strand, within PP_0017 at 22.415 kb on - strand, within PP_0017 at 22.459 kb on - strand, within PP_0017 at 22.467 kb on + strand, within PP_0017 at 22.467 kb on + strand, within PP_0017 at 22.467 kb on + strand, within PP_0017 at 22.474 kb on - strand, within PP_0017 at 22.492 kb on + strand, within PP_0017 at 22.493 kb on - strand, within PP_0017 at 22.505 kb on + strand at 22.506 kb on - strand at 22.640 kb on + strand at 22.649 kb on + strand at 22.650 kb on - strand at 22.650 kb on - strand at 22.653 kb on + strand at 22.654 kb on - strand at 22.839 kb on + strand at 22.839 kb on + strand at 22.840 kb on - strand at 22.840 kb on - strand at 22.840 kb on - strand at 22.840 kb on - strand at 22.913 kb on - strand at 22.948 kb on + strand at 22.948 kb on + strand at 22.990 kb on + strand at 22.991 kb on - strand at 23.005 kb on + strand at 23.029 kb on + strand at 23.029 kb on + strand at 23.030 kb on - strand at 23.030 kb on - strand at 23.101 kb on + strand at 23.101 kb on + strand at 23.103 kb on + strand at 23.103 kb on + strand at 23.103 kb on + strand at 23.103 kb on + strand at 23.103 kb on + strand at 23.103 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminoadipic 10 mM (C) remove 19,205 + -0.6 19,205 + -0.2 19,206 - +0.5 19,206 - +0.3 19,206 - +0.6 19,213 + -0.3 19,213 + +1.9 19,213 + +0.1 19,213 + +0.5 19,213 + -0.5 19,214 - -0.3 19,231 + +0.7 19,232 - +0.1 19,269 + PP_0015 0.11 +0.4 19,270 - PP_0015 0.11 +2.1 19,309 + PP_0015 0.15 +0.4 19,309 + PP_0015 0.15 +0.1 19,310 - PP_0015 0.15 +1.9 19,367 + PP_0015 0.21 +0.4 19,367 + PP_0015 0.21 -0.1 19,367 + PP_0015 0.21 -0.3 19,368 - PP_0015 0.21 -0.5 19,368 - PP_0015 0.21 +0.6 19,529 - PP_0015 0.38 +0.9 19,529 - PP_0015 0.38 -1.0 19,542 + PP_0015 0.39 +0.1 19,543 - PP_0015 0.40 +0.7 19,610 + PP_0015 0.47 -1.0 19,618 + PP_0015 0.47 +0.5 19,618 + PP_0015 0.47 +0.2 19,618 + PP_0015 0.47 +1.3 19,619 - PP_0015 0.47 -0.1 19,619 - PP_0015 0.47 +0.8 19,619 - PP_0015 0.47 -0.1 19,628 + PP_0015 0.48 +0.3 19,628 + PP_0015 0.48 +0.5 19,629 - PP_0015 0.49 +0.8 19,629 - PP_0015 0.49 +0.8 19,629 - PP_0015 0.49 +0.1 19,629 - PP_0015 0.49 +0.6 19,629 - PP_0015 0.49 +0.2 19,672 + PP_0015 0.53 -1.3 19,720 - PP_0015 0.58 -0.4 19,789 + PP_0015 0.65 -0.2 19,789 + PP_0015 0.65 +0.0 19,789 + PP_0015 0.65 +0.4 19,790 - PP_0015 0.65 -1.1 19,790 - PP_0015 0.65 +0.1 19,790 - PP_0015 0.65 +2.0 19,790 - PP_0015 0.65 +1.0 19,860 + PP_0015 0.73 +0.5 19,876 + PP_0015 0.74 +0.1 19,877 - PP_0015 0.74 +0.6 19,877 - PP_0015 0.74 +1.0 19,886 + PP_0015 0.75 -0.1 19,886 + PP_0015 0.75 +0.3 19,886 + PP_0015 0.75 +0.8 19,887 - PP_0015 0.75 +0.3 19,898 + PP_0015 0.77 -0.3 19,913 + PP_0015 0.78 -0.1 19,913 + PP_0015 0.78 +0.4 19,914 - +1.2 20,021 + PP_0015 0.89 +0.4 20,021 + PP_0015 0.89 -0.4 20,022 - PP_0015 0.89 +0.7 20,022 - PP_0015 0.89 +0.2 20,022 - PP_0015 0.89 +0.2 20,022 - PP_0015 0.89 -0.2 20,116 + -0.2 20,116 + -0.3 20,117 - -0.5 20,117 - -1.2 20,117 - +1.9 20,117 - +1.8 20,154 + +0.3 20,170 - +0.1 20,170 - +1.0 20,170 - +0.0 20,193 + -0.7 20,194 - +0.2 20,194 - -0.9 20,211 + +0.6 20,211 + +1.4 20,211 + +0.1 20,211 + +0.9 20,211 + -0.3 20,211 + +0.7 20,212 - +0.4 20,212 - -0.4 20,212 - -0.2 20,252 + +0.6 20,425 - PP_0016 0.12 +0.3 20,425 - PP_0016 0.12 +0.3 20,425 - PP_0016 0.12 +0.7 20,425 - PP_0016 0.12 -0.5 20,447 + PP_0016 0.13 +0.5 20,596 + PP_0016 0.21 -0.3 20,597 - PP_0016 0.21 +0.2 20,659 + PP_0016 0.24 +0.6 20,659 + PP_0016 0.24 +1.5 20,700 - PP_0016 0.26 +0.0 20,745 - PP_0016 0.29 +1.5 20,838 + PP_0016 0.33 +0.0 20,844 + PP_0016 0.34 -0.3 20,854 + PP_0016 0.34 +0.5 20,855 - PP_0016 0.34 +1.9 20,855 - PP_0016 0.34 +1.2 20,979 + PP_0016 0.41 -0.3 20,980 - PP_0016 0.41 -0.0 20,981 + PP_0016 0.41 +0.6 20,981 + PP_0016 0.41 -0.4 20,981 + PP_0016 0.41 +0.4 20,981 + PP_0016 0.41 +1.4 20,981 + PP_0016 0.41 +1.2 20,981 + PP_0016 0.41 +0.4 20,982 - PP_0016 0.41 +0.0 20,982 - PP_0016 0.41 +0.0 20,982 - PP_0016 0.41 +0.3 21,075 + PP_0016 0.46 +0.8 21,168 + PP_0016 0.51 +0.5 21,169 - PP_0016 0.51 -0.0 21,241 + PP_0016 0.54 +0.8 21,241 + PP_0016 0.54 +1.0 21,241 + PP_0016 0.54 -1.0 21,241 + PP_0016 0.54 +0.0 21,242 - PP_0016 0.54 +0.3 21,242 - PP_0016 0.54 -0.0 21,324 + PP_0016 0.59 +1.0 21,325 - PP_0016 0.59 +0.6 21,325 - PP_0016 0.59 +0.3 21,357 + PP_0016 0.60 +0.2 21,357 + PP_0016 0.60 +0.6 21,357 + PP_0016 0.60 +0.3 21,358 - PP_0016 0.61 -0.3 21,358 - PP_0016 0.61 +0.3 21,368 - PP_0016 0.61 +1.8 21,460 + PP_0016 0.66 -0.2 21,495 - PP_0016 0.68 +0.3 21,495 - PP_0016 0.68 -0.1 21,495 - PP_0016 0.68 +0.6 21,497 - PP_0016 0.68 +0.2 21,552 + PP_0016 0.71 +0.4 21,552 + PP_0016 0.71 +0.1 21,552 + PP_0016 0.71 +1.0 21,553 - PP_0016 0.71 +0.8 21,553 - PP_0016 0.71 +1.0 21,553 - PP_0016 0.71 +0.6 21,553 - PP_0016 0.71 +0.4 21,553 - PP_0016 0.71 +0.7 21,553 - PP_0016 0.71 +0.5 21,575 + PP_0016 0.72 -0.0 21,575 + PP_0016 0.72 +0.4 21,618 + PP_0016 0.74 +0.8 21,619 - PP_0016 0.74 +1.0 21,717 + PP_0016 0.79 +0.3 21,718 - PP_0016 0.79 +0.5 21,718 - PP_0016 0.79 -0.2 21,718 - PP_0016 0.79 +1.0 21,740 + PP_0016 0.80 +1.0 21,740 + PP_0016 0.80 +0.0 21,765 + PP_0016 0.82 +0.4 21,766 - PP_0016 0.82 +0.3 21,811 + PP_0016 0.84 +1.0 21,811 + PP_0016 0.84 +0.9 21,812 - PP_0016 0.84 +0.8 21,812 - PP_0016 0.84 +1.1 21,845 + PP_0016 0.86 +0.9 21,845 + PP_0016 0.86 +0.5 21,845 + PP_0016 0.86 +0.4 21,845 + PP_0016 0.86 +1.5 21,845 + PP_0016 0.86 +0.5 21,845 + PP_0016 0.86 +0.5 21,846 - PP_0016 0.86 +2.2 21,846 - PP_0016 0.86 -0.3 21,846 - PP_0016 0.86 -0.3 21,846 - PP_0016 0.86 +0.4 21,847 + PP_0016 0.86 -0.1 21,847 + PP_0016 0.86 +0.1 21,848 - PP_0016 0.86 +0.2 21,872 + PP_0016 0.87 -0.7 21,872 + PP_0016 0.87 +0.2 21,972 - -0.1 21,972 - +0.6 22,005 - +1.5 22,112 + -0.0 22,117 - +1.4 22,117 - +0.2 22,140 + -0.4 22,170 + +0.3 22,170 + -0.1 22,170 + +0.7 22,170 + +0.1 22,171 - +0.0 22,171 - +0.8 22,171 - -0.4 22,171 - +0.5 22,171 - +1.5 22,171 - +0.5 22,309 + PP_0017 0.38 +0.2 22,309 + PP_0017 0.38 +0.2 22,371 + PP_0017 0.56 +0.7 22,371 + PP_0017 0.56 +0.3 22,406 + PP_0017 0.65 +1.1 22,406 + PP_0017 0.65 +0.3 22,407 - PP_0017 0.66 +0.0 22,407 - PP_0017 0.66 +1.1 22,415 - PP_0017 0.68 +0.2 22,415 - PP_0017 0.68 +1.0 22,459 - PP_0017 0.80 +0.3 22,467 + PP_0017 0.82 -0.8 22,467 + PP_0017 0.82 +0.4 22,467 + PP_0017 0.82 +0.6 22,474 - PP_0017 0.84 +0.3 22,492 + PP_0017 0.89 -0.2 22,493 - PP_0017 0.89 +0.5 22,505 + +0.1 22,506 - +0.3 22,640 + +0.2 22,649 + +0.8 22,650 - +0.3 22,650 - +0.9 22,653 + +1.2 22,654 - +0.5 22,839 + +1.7 22,839 + -0.7 22,840 - -0.1 22,840 - +0.1 22,840 - +0.7 22,840 - +0.7 22,913 - -0.5 22,948 + -0.1 22,948 + -0.3 22,990 + +0.5 22,991 - -1.6 23,005 + +1.1 23,029 + +1.0 23,029 + +0.3 23,030 - -0.7 23,030 - -1.5 23,101 + +0.5 23,101 + +0.9 23,103 + +0.8 23,103 + +0.4 23,103 + +0.3 23,103 + +0.4 23,103 + +0.5 23,103 + +0.7
Or see this region's nucleotide sequence