Experiment: KB with Totarol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4917 and Psyr_RNA77 are separated by 758 nucleotides Psyr_RNA77 and Psyr_4918 are separated by 580 nucleotides
Psyr_4917: Psyr_4917 - Heat shock protein DnaJ, N-terminal, at 5,828,952 to 5,829,977
_4917
Psyr_RNA77: Psyr_RNA77 - tRNA-Thr, at 5,830,736 to 5,830,811
_RNA77
Psyr_4918: Psyr_4918 - hypothetical protein, at 5,831,392 to 5,831,862
_4918
Position (kb) 5830
5831 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5829.782 kb on - strand, within Psyr_4917 at 5829.782 kb on - strand, within Psyr_4917 at 5829.853 kb on + strand, within Psyr_4917 at 5829.956 kb on - strand at 5829.956 kb on - strand at 5830.014 kb on - strand at 5830.039 kb on + strand at 5830.119 kb on + strand at 5830.119 kb on + strand at 5830.119 kb on + strand at 5830.119 kb on + strand at 5830.119 kb on + strand at 5830.120 kb on - strand at 5830.120 kb on - strand at 5830.227 kb on - strand at 5830.227 kb on - strand at 5830.227 kb on - strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.267 kb on + strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.268 kb on - strand at 5830.313 kb on + strand at 5830.313 kb on + strand at 5830.313 kb on + strand at 5830.314 kb on - strand at 5830.314 kb on - strand at 5830.322 kb on - strand at 5830.390 kb on + strand at 5830.390 kb on + strand at 5830.390 kb on + strand at 5830.390 kb on + strand at 5830.391 kb on - strand at 5830.532 kb on + strand at 5830.532 kb on + strand at 5830.532 kb on + strand at 5830.532 kb on + strand at 5830.532 kb on + strand at 5830.532 kb on + strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.533 kb on - strand at 5830.582 kb on - strand at 5830.733 kb on + strand at 5830.813 kb on - strand at 5830.814 kb on + strand at 5830.815 kb on - strand at 5830.863 kb on + strand at 5830.863 kb on + strand at 5830.863 kb on + strand at 5830.864 kb on - strand at 5830.875 kb on + strand at 5830.875 kb on + strand at 5830.912 kb on - strand at 5831.030 kb on + strand at 5831.033 kb on + strand at 5831.068 kb on - strand at 5831.097 kb on + strand at 5831.098 kb on - strand at 5831.128 kb on + strand at 5831.131 kb on + strand at 5831.131 kb on + strand at 5831.131 kb on + strand at 5831.132 kb on - strand at 5831.137 kb on + strand at 5831.147 kb on - strand at 5831.149 kb on + strand at 5831.150 kb on - strand at 5831.150 kb on - strand at 5831.150 kb on - strand at 5831.150 kb on - strand at 5831.153 kb on + strand at 5831.153 kb on + strand at 5831.189 kb on + strand at 5831.201 kb on - strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.206 kb on + strand at 5831.207 kb on - strand at 5831.207 kb on - strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.208 kb on + strand at 5831.209 kb on - strand at 5831.209 kb on - strand at 5831.209 kb on - strand at 5831.209 kb on - strand at 5831.209 kb on - strand at 5831.209 kb on - strand at 5831.212 kb on + strand at 5831.213 kb on - strand at 5831.233 kb on + strand at 5831.233 kb on + strand at 5831.233 kb on + strand at 5831.233 kb on + strand at 5831.233 kb on + strand at 5831.234 kb on - strand at 5831.234 kb on - strand at 5831.234 kb on - strand at 5831.235 kb on + strand at 5831.236 kb on - strand at 5831.236 kb on - strand at 5831.236 kb on - strand at 5831.285 kb on + strand at 5831.286 kb on - strand at 5831.286 kb on - strand at 5831.289 kb on + strand at 5831.289 kb on + strand at 5831.289 kb on + strand at 5831.289 kb on + strand at 5831.290 kb on - strand at 5831.290 kb on - strand at 5831.293 kb on - strand at 5831.380 kb on + strand at 5831.405 kb on + strand at 5831.406 kb on - strand at 5831.406 kb on - strand at 5831.500 kb on + strand, within Psyr_4918 at 5831.500 kb on + strand, within Psyr_4918 at 5831.500 kb on + strand, within Psyr_4918 at 5831.500 kb on + strand, within Psyr_4918 at 5831.501 kb on - strand, within Psyr_4918 at 5831.501 kb on - strand, within Psyr_4918 at 5831.501 kb on - strand, within Psyr_4918 at 5831.644 kb on + strand, within Psyr_4918 at 5831.644 kb on + strand, within Psyr_4918 at 5831.644 kb on + strand, within Psyr_4918 at 5831.644 kb on + strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918 at 5831.645 kb on - strand, within Psyr_4918
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Totarol 10 mM remove 5,829,782 - Psyr_4917 0.81 +0.5 5,829,782 - Psyr_4917 0.81 +1.1 5,829,853 + Psyr_4917 0.88 -0.2 5,829,956 - +0.2 5,829,956 - +0.5 5,830,014 - -0.7 5,830,039 + +0.4 5,830,119 + -1.2 5,830,119 + +0.9 5,830,119 + -0.6 5,830,119 + -0.7 5,830,119 + -0.3 5,830,120 - +3.5 5,830,120 - +1.0 5,830,227 - +0.5 5,830,227 - +0.6 5,830,227 - -0.5 5,830,267 + +3.5 5,830,267 + +0.6 5,830,267 + +1.2 5,830,267 + +0.1 5,830,267 + +0.2 5,830,267 + +0.1 5,830,267 + -0.2 5,830,268 - +1.3 5,830,268 - +1.2 5,830,268 - -0.6 5,830,268 - -2.4 5,830,268 - +1.5 5,830,268 - +2.4 5,830,268 - +0.9 5,830,268 - -0.8 5,830,268 - +0.1 5,830,268 - +1.5 5,830,313 + +0.1 5,830,313 + -0.6 5,830,313 + +0.9 5,830,314 - -1.7 5,830,314 - -0.4 5,830,322 - +0.8 5,830,390 + +1.3 5,830,390 + +0.6 5,830,390 + +1.9 5,830,390 + -0.2 5,830,391 - -0.8 5,830,532 + -0.2 5,830,532 + -0.9 5,830,532 + -0.6 5,830,532 + +0.3 5,830,532 + -1.1 5,830,532 + +0.9 5,830,533 - -1.0 5,830,533 - +0.1 5,830,533 - -0.9 5,830,533 - -0.3 5,830,533 - -0.5 5,830,533 - +1.3 5,830,533 - +1.5 5,830,533 - +0.6 5,830,533 - +1.5 5,830,582 - +0.7 5,830,733 + -2.6 5,830,813 - -0.3 5,830,814 + +0.5 5,830,815 - -1.0 5,830,863 + -0.3 5,830,863 + -0.4 5,830,863 + -2.3 5,830,864 - -1.7 5,830,875 + +0.1 5,830,875 + +1.3 5,830,912 - +1.2 5,831,030 + +2.2 5,831,033 + -0.4 5,831,068 - +1.1 5,831,097 + -0.6 5,831,098 - +1.7 5,831,128 + -1.1 5,831,131 + -0.6 5,831,131 + -1.7 5,831,131 + +2.8 5,831,132 - +0.9 5,831,137 + +2.0 5,831,147 - +1.5 5,831,149 + +4.5 5,831,150 - -2.1 5,831,150 - +1.3 5,831,150 - -0.4 5,831,150 - +1.1 5,831,153 + -0.1 5,831,153 + -1.6 5,831,189 + -0.1 5,831,201 - -0.6 5,831,206 + +1.5 5,831,206 + -1.2 5,831,206 + +1.0 5,831,206 + +0.8 5,831,206 + -2.3 5,831,206 + -1.9 5,831,206 + +0.2 5,831,206 + -2.3 5,831,207 - -0.1 5,831,207 - +0.3 5,831,208 + +0.5 5,831,208 + -0.1 5,831,208 + +1.5 5,831,208 + -1.7 5,831,208 + +1.2 5,831,208 + -1.1 5,831,208 + -1.7 5,831,208 + -0.5 5,831,208 + +0.5 5,831,208 + -0.1 5,831,209 - -0.3 5,831,209 - -0.5 5,831,209 - +4.1 5,831,209 - +0.5 5,831,209 - -1.0 5,831,209 - -0.5 5,831,212 + -1.6 5,831,213 - -0.0 5,831,233 + -1.4 5,831,233 + +0.2 5,831,233 + +1.1 5,831,233 + -0.2 5,831,233 + +0.0 5,831,234 - +0.4 5,831,234 - -0.5 5,831,234 - +0.8 5,831,235 + +1.0 5,831,236 - -0.3 5,831,236 - -0.9 5,831,236 - -1.2 5,831,285 + +2.3 5,831,286 - +0.2 5,831,286 - -0.1 5,831,289 + +0.6 5,831,289 + +0.8 5,831,289 + -0.7 5,831,289 + +3.1 5,831,290 - +0.1 5,831,290 - +0.2 5,831,293 - +0.6 5,831,380 + +0.4 5,831,405 + -2.2 5,831,406 - -0.1 5,831,406 - -0.7 5,831,500 + Psyr_4918 0.23 -1.3 5,831,500 + Psyr_4918 0.23 +0.1 5,831,500 + Psyr_4918 0.23 -1.9 5,831,500 + Psyr_4918 0.23 -0.7 5,831,501 - Psyr_4918 0.23 +1.3 5,831,501 - Psyr_4918 0.23 -1.5 5,831,501 - Psyr_4918 0.23 +0.4 5,831,644 + Psyr_4918 0.54 +0.1 5,831,644 + Psyr_4918 0.54 -0.7 5,831,644 + Psyr_4918 0.54 -1.2 5,831,644 + Psyr_4918 0.54 -2.8 5,831,645 - Psyr_4918 0.54 -0.9 5,831,645 - Psyr_4918 0.54 +0.3 5,831,645 - Psyr_4918 0.54 -0.2 5,831,645 - Psyr_4918 0.54 +1.9 5,831,645 - Psyr_4918 0.54 +0.9 5,831,645 - Psyr_4918 0.54 +0.4 5,831,645 - Psyr_4918 0.54 +0.1
Or see this region's nucleotide sequence