Experiment: KB with Totarol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5034 and Psyr_5035 are separated by 170 nucleotides Psyr_5035 and Psyr_5036 are separated by 190 nucleotides
Psyr_5034: Psyr_5034 - CBS:Protein of unknown function DUF21:Transporter-associated region, at 5,973,194 to 5,974,534
_5034
Psyr_5035: Psyr_5035 - Peptidase M23B, at 5,974,705 to 5,975,607
_5035
Psyr_5036: Psyr_5036 - Response regulator receiver, at 5,975,798 to 5,976,682
_5036
Position (kb) 5974
5975
5976 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5973.773 kb on + strand, within Psyr_5034 at 5973.774 kb on - strand, within Psyr_5034 at 5973.992 kb on + strand, within Psyr_5034 at 5973.992 kb on + strand, within Psyr_5034 at 5973.992 kb on + strand, within Psyr_5034 at 5973.992 kb on + strand, within Psyr_5034 at 5973.993 kb on - strand, within Psyr_5034 at 5973.993 kb on - strand, within Psyr_5034 at 5974.069 kb on + strand, within Psyr_5034 at 5974.070 kb on - strand, within Psyr_5034 at 5974.217 kb on + strand, within Psyr_5034 at 5974.217 kb on + strand, within Psyr_5034 at 5974.217 kb on + strand, within Psyr_5034 at 5974.218 kb on - strand, within Psyr_5034 at 5974.281 kb on + strand, within Psyr_5034 at 5974.281 kb on + strand, within Psyr_5034 at 5974.412 kb on + strand at 5974.412 kb on + strand at 5974.413 kb on - strand at 5974.577 kb on + strand at 5974.688 kb on + strand at 5974.688 kb on + strand at 5974.688 kb on + strand at 5974.688 kb on + strand at 5974.688 kb on + strand at 5974.688 kb on + strand at 5974.688 kb on + strand at 5974.688 kb on + strand at 5974.689 kb on - strand at 5974.689 kb on - strand at 5974.919 kb on + strand, within Psyr_5035 at 5974.919 kb on + strand, within Psyr_5035 at 5974.920 kb on - strand, within Psyr_5035 at 5975.099 kb on + strand, within Psyr_5035 at 5975.099 kb on + strand, within Psyr_5035 at 5975.216 kb on + strand, within Psyr_5035 at 5975.216 kb on + strand, within Psyr_5035 at 5975.216 kb on + strand, within Psyr_5035 at 5975.216 kb on + strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.217 kb on - strand, within Psyr_5035 at 5975.369 kb on + strand, within Psyr_5035 at 5975.369 kb on + strand, within Psyr_5035 at 5975.369 kb on + strand, within Psyr_5035 at 5975.370 kb on - strand, within Psyr_5035 at 5975.370 kb on - strand, within Psyr_5035 at 5975.370 kb on - strand, within Psyr_5035 at 5975.370 kb on - strand, within Psyr_5035 at 5975.387 kb on + strand, within Psyr_5035 at 5975.387 kb on + strand, within Psyr_5035 at 5975.387 kb on + strand, within Psyr_5035 at 5975.387 kb on + strand, within Psyr_5035 at 5975.387 kb on + strand, within Psyr_5035 at 5975.387 kb on + strand, within Psyr_5035 at 5975.387 kb on + strand, within Psyr_5035 at 5975.388 kb on - strand, within Psyr_5035 at 5975.388 kb on - strand, within Psyr_5035 at 5975.388 kb on - strand, within Psyr_5035 at 5975.398 kb on + strand, within Psyr_5035 at 5975.399 kb on - strand, within Psyr_5035 at 5975.443 kb on - strand, within Psyr_5035 at 5975.536 kb on - strand at 5975.537 kb on + strand at 5975.589 kb on + strand at 5975.590 kb on - strand at 5975.646 kb on - strand at 5975.646 kb on - strand at 5975.742 kb on + strand at 5975.742 kb on + strand at 5975.743 kb on - strand at 5975.813 kb on - strand at 5975.856 kb on + strand at 5975.856 kb on + strand at 5975.952 kb on + strand, within Psyr_5036 at 5976.018 kb on - strand, within Psyr_5036 at 5976.453 kb on + strand, within Psyr_5036
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Totarol 10 mM remove 5,973,773 + Psyr_5034 0.43 -1.0 5,973,774 - Psyr_5034 0.43 -1.2 5,973,992 + Psyr_5034 0.60 -1.0 5,973,992 + Psyr_5034 0.60 -0.3 5,973,992 + Psyr_5034 0.60 +0.4 5,973,992 + Psyr_5034 0.60 -0.8 5,973,993 - Psyr_5034 0.60 -0.0 5,973,993 - Psyr_5034 0.60 -0.2 5,974,069 + Psyr_5034 0.65 -0.1 5,974,070 - Psyr_5034 0.65 -1.1 5,974,217 + Psyr_5034 0.76 +0.3 5,974,217 + Psyr_5034 0.76 -1.2 5,974,217 + Psyr_5034 0.76 +0.8 5,974,218 - Psyr_5034 0.76 +1.4 5,974,281 + Psyr_5034 0.81 -0.0 5,974,281 + Psyr_5034 0.81 +0.9 5,974,412 + -0.4 5,974,412 + -0.4 5,974,413 - -0.2 5,974,577 + -1.4 5,974,688 + +0.6 5,974,688 + +0.9 5,974,688 + -1.0 5,974,688 + +0.2 5,974,688 + -0.9 5,974,688 + -1.0 5,974,688 + -0.8 5,974,688 + -0.2 5,974,689 - +0.6 5,974,689 - +1.4 5,974,919 + Psyr_5035 0.24 -0.7 5,974,919 + Psyr_5035 0.24 -2.1 5,974,920 - Psyr_5035 0.24 +0.1 5,975,099 + Psyr_5035 0.44 +0.4 5,975,099 + Psyr_5035 0.44 +1.2 5,975,216 + Psyr_5035 0.57 +1.1 5,975,216 + Psyr_5035 0.57 -1.0 5,975,216 + Psyr_5035 0.57 -0.9 5,975,216 + Psyr_5035 0.57 +0.0 5,975,217 - Psyr_5035 0.57 -1.4 5,975,217 - Psyr_5035 0.57 -1.2 5,975,217 - Psyr_5035 0.57 -0.2 5,975,369 + Psyr_5035 0.74 +0.0 5,975,369 + Psyr_5035 0.74 -0.0 5,975,369 + Psyr_5035 0.74 -1.1 5,975,370 - Psyr_5035 0.74 -0.1 5,975,370 - Psyr_5035 0.74 -1.5 5,975,370 - Psyr_5035 0.74 -0.3 5,975,370 - Psyr_5035 0.74 +1.3 5,975,387 + Psyr_5035 0.76 +0.8 5,975,387 + Psyr_5035 0.76 +1.1 5,975,387 + Psyr_5035 0.76 -0.3 5,975,387 + Psyr_5035 0.76 +0.6 5,975,387 + Psyr_5035 0.76 +0.6 5,975,387 + Psyr_5035 0.76 +1.8 5,975,387 + Psyr_5035 0.76 +0.8 5,975,388 - Psyr_5035 0.76 -0.6 5,975,388 - Psyr_5035 0.76 -1.0 5,975,388 - Psyr_5035 0.76 +1.4 5,975,398 + Psyr_5035 0.77 +0.8 5,975,399 - Psyr_5035 0.77 +0.1 5,975,443 - Psyr_5035 0.82 +0.7 5,975,536 - -1.1 5,975,537 + +0.6 5,975,589 + -0.9 5,975,590 - +0.1 5,975,646 - +0.0 5,975,646 - +1.6 5,975,742 + -0.3 5,975,742 + -1.1 5,975,743 - -1.4 5,975,813 - -1.2 5,975,856 + -0.3 5,975,856 + +0.2 5,975,952 + Psyr_5036 0.17 +0.6 5,976,018 - Psyr_5036 0.25 +3.1 5,976,453 + Psyr_5036 0.74 -0.4
Or see this region's nucleotide sequence