Experiment: KB with Totarol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4988 and Psyr_4989 overlap by 13 nucleotides Psyr_4989 and Psyr_4990 are separated by 246 nucleotides Psyr_4990 and Psyr_4991 are separated by 7 nucleotides Psyr_4991 and Psyr_4992 are separated by 439 nucleotides
Psyr_4988: Psyr_4988 - YD repeat protein, at 5,916,253 to 5,917,695
_4988
Psyr_4989: Psyr_4989 - hypothetical protein, at 5,917,683 to 5,918,153
_4989
Psyr_4990: Psyr_4990 - YD repeat protein, at 5,918,400 to 5,921,003
_4990
Psyr_4991: Psyr_4991 - hypothetical protein, at 5,921,011 to 5,921,331
_4991
Psyr_4992: Psyr_4992 - YD repeat protein, at 5,921,771 to 5,923,126
_4992
Position (kb) 5918
5919
5920
5921
5922 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5917.423 kb on + strand, within Psyr_4988 at 5917.424 kb on - strand, within Psyr_4988 at 5917.424 kb on - strand, within Psyr_4988 at 5917.488 kb on - strand, within Psyr_4988 at 5917.516 kb on - strand, within Psyr_4988 at 5917.542 kb on + strand, within Psyr_4988 at 5917.548 kb on + strand, within Psyr_4988 at 5917.548 kb on + strand, within Psyr_4988 at 5917.549 kb on - strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.551 kb on - strand at 5917.551 kb on - strand at 5917.551 kb on - strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.578 kb on - strand at 5917.578 kb on - strand at 5917.578 kb on - strand at 5917.650 kb on + strand at 5917.651 kb on - strand at 5917.651 kb on - strand at 5917.659 kb on - strand at 5917.659 kb on - strand at 5917.659 kb on - strand at 5917.662 kb on + strand at 5917.663 kb on - strand at 5917.737 kb on + strand, within Psyr_4989 at 5917.738 kb on - strand, within Psyr_4989 at 5917.738 kb on - strand, within Psyr_4989 at 5917.766 kb on + strand, within Psyr_4989 at 5917.766 kb on + strand, within Psyr_4989 at 5917.824 kb on - strand, within Psyr_4989 at 5917.855 kb on + strand, within Psyr_4989 at 5917.900 kb on + strand, within Psyr_4989 at 5917.906 kb on + strand, within Psyr_4989 at 5917.906 kb on + strand, within Psyr_4989 at 5917.985 kb on - strand, within Psyr_4989 at 5918.024 kb on - strand, within Psyr_4989 at 5918.126 kb on - strand at 5918.287 kb on + strand at 5918.287 kb on + strand at 5918.288 kb on - strand at 5918.291 kb on + strand at 5918.359 kb on + strand at 5918.359 kb on + strand at 5918.361 kb on + strand at 5918.362 kb on - strand at 5918.375 kb on + strand at 5918.411 kb on + strand at 5918.412 kb on - strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.559 kb on + strand at 5918.676 kb on + strand, within Psyr_4990 at 5918.676 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.739 kb on + strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.740 kb on - strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.874 kb on + strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.875 kb on - strand, within Psyr_4990 at 5918.923 kb on + strand, within Psyr_4990 at 5918.923 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.051 kb on + strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.052 kb on - strand, within Psyr_4990 at 5919.268 kb on - strand, within Psyr_4990 at 5919.268 kb on - strand, within Psyr_4990 at 5919.274 kb on - strand, within Psyr_4990 at 5919.421 kb on - strand, within Psyr_4990 at 5919.427 kb on - strand, within Psyr_4990 at 5919.490 kb on - strand, within Psyr_4990 at 5919.490 kb on - strand, within Psyr_4990 at 5919.670 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.723 kb on + strand, within Psyr_4990 at 5919.813 kb on + strand, within Psyr_4990 at 5919.813 kb on + strand, within Psyr_4990 at 5919.813 kb on + strand, within Psyr_4990 at 5919.814 kb on - strand, within Psyr_4990 at 5919.969 kb on + strand, within Psyr_4990 at 5919.969 kb on + strand, within Psyr_4990 at 5919.975 kb on + strand, within Psyr_4990 at 5919.975 kb on + strand, within Psyr_4990 at 5919.975 kb on + strand, within Psyr_4990 at 5920.019 kb on - strand, within Psyr_4990 at 5920.039 kb on - strand, within Psyr_4990 at 5920.039 kb on - strand, within Psyr_4990 at 5920.039 kb on - strand, within Psyr_4990 at 5920.097 kb on + strand, within Psyr_4990 at 5920.097 kb on + strand, within Psyr_4990 at 5920.097 kb on + strand, within Psyr_4990 at 5920.097 kb on + strand, within Psyr_4990 at 5920.107 kb on + strand, within Psyr_4990 at 5920.108 kb on - strand, within Psyr_4990 at 5920.108 kb on - strand, within Psyr_4990 at 5920.113 kb on + strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.243 kb on - strand, within Psyr_4990 at 5920.311 kb on + strand, within Psyr_4990 at 5920.312 kb on - strand, within Psyr_4990 at 5920.315 kb on - strand, within Psyr_4990 at 5920.444 kb on + strand, within Psyr_4990 at 5920.444 kb on + strand, within Psyr_4990 at 5920.444 kb on + strand, within Psyr_4990 at 5920.444 kb on + strand, within Psyr_4990 at 5920.445 kb on - strand, within Psyr_4990 at 5920.445 kb on - strand, within Psyr_4990 at 5920.445 kb on - strand, within Psyr_4990 at 5920.445 kb on - strand, within Psyr_4990 at 5920.445 kb on - strand, within Psyr_4990 at 5920.462 kb on - strand, within Psyr_4990 at 5920.489 kb on - strand, within Psyr_4990 at 5920.489 kb on - strand, within Psyr_4990 at 5920.494 kb on - strand, within Psyr_4990 at 5920.507 kb on - strand, within Psyr_4990 at 5920.507 kb on - strand, within Psyr_4990 at 5920.532 kb on + strand, within Psyr_4990 at 5920.579 kb on - strand, within Psyr_4990 at 5920.587 kb on - strand, within Psyr_4990 at 5920.628 kb on - strand, within Psyr_4990 at 5920.656 kb on - strand, within Psyr_4990 at 5920.747 kb on + strand at 5920.752 kb on - strand at 5920.754 kb on + strand at 5920.802 kb on - strand at 5920.802 kb on - strand at 5920.804 kb on + strand at 5920.805 kb on - strand at 5920.805 kb on - strand at 5920.805 kb on - strand at 5920.844 kb on + strand at 5920.845 kb on - strand at 5920.874 kb on + strand at 5920.875 kb on - strand at 5920.875 kb on - strand at 5920.895 kb on + strand at 5920.896 kb on - strand at 5920.922 kb on + strand at 5920.922 kb on + strand at 5920.923 kb on - strand at 5920.923 kb on - strand at 5920.940 kb on - strand at 5921.048 kb on + strand, within Psyr_4991 at 5921.127 kb on + strand, within Psyr_4991 at 5921.159 kb on - strand, within Psyr_4991 at 5921.212 kb on - strand, within Psyr_4991 at 5921.226 kb on - strand, within Psyr_4991 at 5921.377 kb on + strand at 5921.391 kb on + strand at 5921.464 kb on - strand at 5921.472 kb on + strand at 5921.472 kb on + strand at 5921.473 kb on - strand at 5921.478 kb on + strand at 5921.479 kb on - strand at 5921.479 kb on - strand at 5921.504 kb on + strand at 5921.504 kb on + strand at 5921.505 kb on - strand at 5921.578 kb on + strand at 5921.578 kb on + strand at 5921.667 kb on + strand at 5921.667 kb on + strand at 5921.668 kb on - strand at 5921.668 kb on - strand at 5921.668 kb on - strand at 5921.743 kb on + strand at 5921.743 kb on + strand at 5921.744 kb on - strand at 5921.744 kb on - strand at 5921.744 kb on - strand at 5921.799 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Totarol 10 mM remove 5,917,423 + Psyr_4988 0.81 +0.7 5,917,424 - Psyr_4988 0.81 -0.9 5,917,424 - Psyr_4988 0.81 -0.2 5,917,488 - Psyr_4988 0.86 -2.6 5,917,516 - Psyr_4988 0.88 -0.4 5,917,542 + Psyr_4988 0.89 -0.4 5,917,548 + Psyr_4988 0.90 +0.1 5,917,548 + Psyr_4988 0.90 -0.2 5,917,549 - Psyr_4988 0.90 +1.6 5,917,550 + Psyr_4988 0.90 -0.6 5,917,550 + Psyr_4988 0.90 -0.3 5,917,550 + Psyr_4988 0.90 -0.2 5,917,550 + Psyr_4988 0.90 -1.2 5,917,550 + Psyr_4988 0.90 -0.6 5,917,551 - +0.3 5,917,551 - -0.4 5,917,551 - +1.9 5,917,577 + +0.5 5,917,577 + +3.0 5,917,577 + -0.3 5,917,577 + -0.0 5,917,578 - +1.0 5,917,578 - +1.3 5,917,578 - -0.4 5,917,650 + -1.1 5,917,651 - -1.0 5,917,651 - -1.2 5,917,659 - -0.8 5,917,659 - +0.9 5,917,659 - -0.2 5,917,662 + -1.2 5,917,663 - -0.2 5,917,737 + Psyr_4989 0.11 -0.3 5,917,738 - Psyr_4989 0.12 -2.3 5,917,738 - Psyr_4989 0.12 +0.6 5,917,766 + Psyr_4989 0.18 -0.1 5,917,766 + Psyr_4989 0.18 +1.0 5,917,824 - Psyr_4989 0.30 -1.2 5,917,855 + Psyr_4989 0.37 -0.1 5,917,900 + Psyr_4989 0.46 +1.1 5,917,906 + Psyr_4989 0.47 +0.7 5,917,906 + Psyr_4989 0.47 -0.6 5,917,985 - Psyr_4989 0.64 -2.7 5,918,024 - Psyr_4989 0.72 +1.6 5,918,126 - +0.2 5,918,287 + -1.1 5,918,287 + +0.4 5,918,288 - -0.8 5,918,291 + -0.6 5,918,359 + -1.1 5,918,359 + +1.7 5,918,361 + +0.9 5,918,362 - -2.1 5,918,375 + +1.1 5,918,411 + -0.3 5,918,412 - -2.2 5,918,487 + -0.8 5,918,487 + +0.9 5,918,487 + -1.0 5,918,487 + -0.8 5,918,487 + -0.3 5,918,488 - +4.1 5,918,488 - +3.7 5,918,488 - +0.9 5,918,559 + -2.7 5,918,676 + Psyr_4990 0.11 -2.3 5,918,676 + Psyr_4990 0.11 +1.3 5,918,739 + Psyr_4990 0.13 +0.2 5,918,739 + Psyr_4990 0.13 -0.2 5,918,739 + Psyr_4990 0.13 -0.5 5,918,739 + Psyr_4990 0.13 +0.2 5,918,739 + Psyr_4990 0.13 -0.7 5,918,739 + Psyr_4990 0.13 -0.5 5,918,739 + Psyr_4990 0.13 -0.0 5,918,739 + Psyr_4990 0.13 +0.6 5,918,739 + Psyr_4990 0.13 +0.0 5,918,740 - Psyr_4990 0.13 -0.1 5,918,740 - Psyr_4990 0.13 -0.3 5,918,740 - Psyr_4990 0.13 -0.9 5,918,740 - Psyr_4990 0.13 +0.3 5,918,740 - Psyr_4990 0.13 +0.3 5,918,874 + Psyr_4990 0.18 +0.2 5,918,874 + Psyr_4990 0.18 -0.9 5,918,874 + Psyr_4990 0.18 +0.8 5,918,874 + Psyr_4990 0.18 +0.8 5,918,874 + Psyr_4990 0.18 +1.1 5,918,874 + Psyr_4990 0.18 +0.2 5,918,874 + Psyr_4990 0.18 -0.2 5,918,874 + Psyr_4990 0.18 -1.9 5,918,874 + Psyr_4990 0.18 -1.1 5,918,875 - Psyr_4990 0.18 -0.0 5,918,875 - Psyr_4990 0.18 +1.0 5,918,875 - Psyr_4990 0.18 -0.9 5,918,875 - Psyr_4990 0.18 +0.3 5,918,875 - Psyr_4990 0.18 +0.3 5,918,875 - Psyr_4990 0.18 -0.9 5,918,875 - Psyr_4990 0.18 -0.0 5,918,875 - Psyr_4990 0.18 +1.4 5,918,923 + Psyr_4990 0.20 -1.5 5,918,923 + Psyr_4990 0.20 -1.3 5,919,051 + Psyr_4990 0.25 +0.1 5,919,051 + Psyr_4990 0.25 -1.0 5,919,051 + Psyr_4990 0.25 +0.1 5,919,051 + Psyr_4990 0.25 -1.1 5,919,051 + Psyr_4990 0.25 -0.7 5,919,051 + Psyr_4990 0.25 -0.6 5,919,052 - Psyr_4990 0.25 -1.3 5,919,052 - Psyr_4990 0.25 +4.1 5,919,052 - Psyr_4990 0.25 +1.4 5,919,052 - Psyr_4990 0.25 -0.2 5,919,052 - Psyr_4990 0.25 +2.6 5,919,052 - Psyr_4990 0.25 +0.0 5,919,052 - Psyr_4990 0.25 +1.5 5,919,052 - Psyr_4990 0.25 -0.0 5,919,052 - Psyr_4990 0.25 -1.3 5,919,052 - Psyr_4990 0.25 +1.1 5,919,268 - Psyr_4990 0.33 -1.8 5,919,268 - Psyr_4990 0.33 +0.4 5,919,274 - Psyr_4990 0.34 -0.7 5,919,421 - Psyr_4990 0.39 -0.7 5,919,427 - Psyr_4990 0.39 -0.7 5,919,490 - Psyr_4990 0.42 +0.2 5,919,490 - Psyr_4990 0.42 -0.4 5,919,670 + Psyr_4990 0.49 +0.2 5,919,723 + Psyr_4990 0.51 -1.1 5,919,723 + Psyr_4990 0.51 -1.5 5,919,723 + Psyr_4990 0.51 +0.4 5,919,723 + Psyr_4990 0.51 +1.6 5,919,723 + Psyr_4990 0.51 +0.6 5,919,723 + Psyr_4990 0.51 +0.8 5,919,723 + Psyr_4990 0.51 -1.1 5,919,813 + Psyr_4990 0.54 +2.4 5,919,813 + Psyr_4990 0.54 +1.3 5,919,813 + Psyr_4990 0.54 +1.6 5,919,814 - Psyr_4990 0.54 -1.9 5,919,969 + Psyr_4990 0.60 -0.7 5,919,969 + Psyr_4990 0.60 +0.4 5,919,975 + Psyr_4990 0.60 -1.3 5,919,975 + Psyr_4990 0.60 +0.1 5,919,975 + Psyr_4990 0.60 +0.2 5,920,019 - Psyr_4990 0.62 +2.1 5,920,039 - Psyr_4990 0.63 +2.0 5,920,039 - Psyr_4990 0.63 -0.2 5,920,039 - Psyr_4990 0.63 -0.3 5,920,097 + Psyr_4990 0.65 -0.3 5,920,097 + Psyr_4990 0.65 -0.1 5,920,097 + Psyr_4990 0.65 +0.3 5,920,097 + Psyr_4990 0.65 -1.6 5,920,107 + Psyr_4990 0.66 -0.3 5,920,108 - Psyr_4990 0.66 +1.2 5,920,108 - Psyr_4990 0.66 +0.5 5,920,113 + Psyr_4990 0.66 +1.0 5,920,237 - Psyr_4990 0.71 -0.7 5,920,237 - Psyr_4990 0.71 -0.6 5,920,237 - Psyr_4990 0.71 -1.1 5,920,237 - Psyr_4990 0.71 -0.2 5,920,239 - Psyr_4990 0.71 -0.0 5,920,239 - Psyr_4990 0.71 -0.3 5,920,239 - Psyr_4990 0.71 -0.4 5,920,239 - Psyr_4990 0.71 -0.4 5,920,243 - Psyr_4990 0.71 +0.4 5,920,311 + Psyr_4990 0.73 +0.8 5,920,312 - Psyr_4990 0.73 -0.8 5,920,315 - Psyr_4990 0.74 +1.4 5,920,444 + Psyr_4990 0.78 +3.9 5,920,444 + Psyr_4990 0.78 +0.1 5,920,444 + Psyr_4990 0.78 +1.1 5,920,444 + Psyr_4990 0.78 +1.6 5,920,445 - Psyr_4990 0.79 +0.3 5,920,445 - Psyr_4990 0.79 -1.2 5,920,445 - Psyr_4990 0.79 +0.8 5,920,445 - Psyr_4990 0.79 +0.7 5,920,445 - Psyr_4990 0.79 +0.2 5,920,462 - Psyr_4990 0.79 +1.3 5,920,489 - Psyr_4990 0.80 -0.0 5,920,489 - Psyr_4990 0.80 -0.0 5,920,494 - Psyr_4990 0.80 +1.8 5,920,507 - Psyr_4990 0.81 -2.0 5,920,507 - Psyr_4990 0.81 -0.2 5,920,532 + Psyr_4990 0.82 -0.0 5,920,579 - Psyr_4990 0.84 +1.2 5,920,587 - Psyr_4990 0.84 -0.2 5,920,628 - Psyr_4990 0.86 +0.2 5,920,656 - Psyr_4990 0.87 +0.2 5,920,747 + +0.6 5,920,752 - -0.5 5,920,754 + -0.0 5,920,802 - -0.6 5,920,802 - -0.9 5,920,804 + +2.0 5,920,805 - +2.4 5,920,805 - +3.1 5,920,805 - +1.1 5,920,844 + -0.0 5,920,845 - -1.0 5,920,874 + +3.3 5,920,875 - -0.6 5,920,875 - -0.5 5,920,895 + -0.6 5,920,896 - +1.6 5,920,922 + +0.4 5,920,922 + -2.0 5,920,923 - -0.8 5,920,923 - -0.9 5,920,940 - +2.8 5,921,048 + Psyr_4991 0.12 -1.7 5,921,127 + Psyr_4991 0.36 +2.6 5,921,159 - Psyr_4991 0.46 -2.6 5,921,212 - Psyr_4991 0.63 -0.4 5,921,226 - Psyr_4991 0.67 -2.2 5,921,377 + +0.4 5,921,391 + -0.1 5,921,464 - -0.1 5,921,472 + -0.6 5,921,472 + -0.8 5,921,473 - -0.6 5,921,478 + +0.7 5,921,479 - -1.9 5,921,479 - +1.4 5,921,504 + +3.6 5,921,504 + -0.3 5,921,505 - +1.7 5,921,578 + -0.2 5,921,578 + +0.4 5,921,667 + +0.6 5,921,667 + +1.8 5,921,668 - +0.6 5,921,668 - -1.1 5,921,668 - -0.4 5,921,743 + -0.7 5,921,743 + +0.6 5,921,744 - -1.7 5,921,744 - -1.0 5,921,744 - -0.8 5,921,799 - +1.0 5,921,814 - -0.9 5,921,814 - -0.8 5,921,814 - -0.6 5,921,814 - -0.4
Or see this region's nucleotide sequence