Experiment: KB with Totarol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3985 and Psyr_3986 are separated by 118 nucleotides Psyr_3986 and Psyr_3987 are separated by 24 nucleotides
Psyr_3985: Psyr_3985 - Pectate lyase/Amb allergen, at 4,743,013 to 4,744,278
_3985
Psyr_3986: Psyr_3986 - GCN5-related N-acetyltransferase, at 4,744,397 to 4,744,843
_3986
Psyr_3987: Psyr_3987 - Iron-containing alcohol dehydrogenase, at 4,744,868 to 4,746,016
_3987
Position (kb) 4744
4745 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4743.466 kb on + strand, within Psyr_3985 at 4743.466 kb on + strand, within Psyr_3985 at 4743.466 kb on + strand, within Psyr_3985 at 4743.466 kb on + strand, within Psyr_3985 at 4743.466 kb on + strand, within Psyr_3985 at 4743.466 kb on + strand, within Psyr_3985 at 4743.466 kb on + strand, within Psyr_3985 at 4743.466 kb on + strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.467 kb on - strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.470 kb on + strand, within Psyr_3985 at 4743.471 kb on - strand, within Psyr_3985 at 4743.471 kb on - strand, within Psyr_3985 at 4743.471 kb on - strand, within Psyr_3985 at 4743.471 kb on - strand, within Psyr_3985 at 4743.471 kb on - strand, within Psyr_3985 at 4743.471 kb on - strand, within Psyr_3985 at 4743.543 kb on + strand, within Psyr_3985 at 4743.544 kb on - strand, within Psyr_3985 at 4743.869 kb on + strand, within Psyr_3985 at 4743.870 kb on - strand, within Psyr_3985 at 4743.870 kb on - strand, within Psyr_3985 at 4744.378 kb on + strand at 4744.488 kb on + strand, within Psyr_3986 at 4744.489 kb on - strand, within Psyr_3986 at 4744.662 kb on + strand, within Psyr_3986 at 4744.707 kb on + strand, within Psyr_3986 at 4744.707 kb on + strand, within Psyr_3986 at 4744.707 kb on + strand, within Psyr_3986 at 4744.708 kb on - strand, within Psyr_3986 at 4744.825 kb on - strand at 4744.858 kb on - strand at 4744.869 kb on + strand at 4744.886 kb on + strand at 4744.886 kb on + strand at 4744.886 kb on + strand at 4744.886 kb on + strand at 4744.886 kb on + strand at 4744.886 kb on + strand at 4744.887 kb on - strand at 4744.887 kb on - strand at 4744.887 kb on - strand at 4744.887 kb on - strand at 4744.887 kb on - strand at 4744.887 kb on - strand at 4745.286 kb on + strand, within Psyr_3987 at 4745.287 kb on - strand, within Psyr_3987 at 4745.312 kb on - strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.412 kb on + strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.413 kb on - strand, within Psyr_3987 at 4745.609 kb on - strand, within Psyr_3987 at 4745.609 kb on - strand, within Psyr_3987 at 4745.661 kb on + strand, within Psyr_3987 at 4745.661 kb on + strand, within Psyr_3987 at 4745.662 kb on - strand, within Psyr_3987 at 4745.671 kb on + strand, within Psyr_3987 at 4745.741 kb on + strand, within Psyr_3987 at 4745.826 kb on + strand, within Psyr_3987 at 4745.826 kb on + strand, within Psyr_3987 at 4745.827 kb on - strand, within Psyr_3987 at 4745.827 kb on - strand, within Psyr_3987
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Totarol 10 mM remove 4,743,466 + Psyr_3985 0.36 +1.8 4,743,466 + Psyr_3985 0.36 -1.0 4,743,466 + Psyr_3985 0.36 +2.0 4,743,466 + Psyr_3985 0.36 +2.9 4,743,466 + Psyr_3985 0.36 -0.3 4,743,466 + Psyr_3985 0.36 -0.8 4,743,466 + Psyr_3985 0.36 -1.0 4,743,466 + Psyr_3985 0.36 -1.0 4,743,467 - Psyr_3985 0.36 -0.8 4,743,467 - Psyr_3985 0.36 +1.7 4,743,467 - Psyr_3985 0.36 +2.0 4,743,467 - Psyr_3985 0.36 -0.4 4,743,467 - Psyr_3985 0.36 +0.3 4,743,467 - Psyr_3985 0.36 -1.0 4,743,467 - Psyr_3985 0.36 -0.7 4,743,467 - Psyr_3985 0.36 -0.0 4,743,467 - Psyr_3985 0.36 -1.3 4,743,467 - Psyr_3985 0.36 +2.0 4,743,467 - Psyr_3985 0.36 -1.7 4,743,467 - Psyr_3985 0.36 +0.5 4,743,467 - Psyr_3985 0.36 +3.9 4,743,470 + Psyr_3985 0.36 -2.0 4,743,470 + Psyr_3985 0.36 -1.4 4,743,470 + Psyr_3985 0.36 -0.1 4,743,470 + Psyr_3985 0.36 +1.8 4,743,470 + Psyr_3985 0.36 +1.6 4,743,470 + Psyr_3985 0.36 +1.9 4,743,470 + Psyr_3985 0.36 -0.2 4,743,471 - Psyr_3985 0.36 -1.7 4,743,471 - Psyr_3985 0.36 -2.2 4,743,471 - Psyr_3985 0.36 -1.6 4,743,471 - Psyr_3985 0.36 -0.2 4,743,471 - Psyr_3985 0.36 -1.3 4,743,471 - Psyr_3985 0.36 +0.7 4,743,543 + Psyr_3985 0.42 -0.3 4,743,544 - Psyr_3985 0.42 -0.6 4,743,869 + Psyr_3985 0.68 +0.3 4,743,870 - Psyr_3985 0.68 -2.9 4,743,870 - Psyr_3985 0.68 -2.2 4,744,378 + +0.8 4,744,488 + Psyr_3986 0.20 -0.0 4,744,489 - Psyr_3986 0.21 +0.3 4,744,662 + Psyr_3986 0.59 -2.8 4,744,707 + Psyr_3986 0.69 +0.4 4,744,707 + Psyr_3986 0.69 -2.2 4,744,707 + Psyr_3986 0.69 -1.1 4,744,708 - Psyr_3986 0.70 -2.2 4,744,825 - +0.5 4,744,858 - -0.5 4,744,869 + -0.9 4,744,886 + +0.6 4,744,886 + +0.2 4,744,886 + +2.6 4,744,886 + +0.1 4,744,886 + -1.9 4,744,886 + +0.5 4,744,887 - +2.7 4,744,887 - -0.8 4,744,887 - -0.0 4,744,887 - -0.0 4,744,887 - -0.1 4,744,887 - -0.3 4,745,286 + Psyr_3987 0.36 +0.5 4,745,287 - Psyr_3987 0.36 +0.9 4,745,312 - Psyr_3987 0.39 -2.3 4,745,412 + Psyr_3987 0.47 +1.5 4,745,412 + Psyr_3987 0.47 +0.0 4,745,412 + Psyr_3987 0.47 -0.0 4,745,412 + Psyr_3987 0.47 +0.6 4,745,413 - Psyr_3987 0.47 +0.5 4,745,413 - Psyr_3987 0.47 -2.0 4,745,413 - Psyr_3987 0.47 -2.0 4,745,413 - Psyr_3987 0.47 +2.9 4,745,413 - Psyr_3987 0.47 +1.5 4,745,413 - Psyr_3987 0.47 -0.9 4,745,609 - Psyr_3987 0.64 -0.9 4,745,609 - Psyr_3987 0.64 +0.3 4,745,661 + Psyr_3987 0.69 -1.2 4,745,661 + Psyr_3987 0.69 +3.6 4,745,662 - Psyr_3987 0.69 +0.6 4,745,671 + Psyr_3987 0.70 -1.6 4,745,741 + Psyr_3987 0.76 +1.9 4,745,826 + Psyr_3987 0.83 +0.3 4,745,826 + Psyr_3987 0.83 +0.2 4,745,827 - Psyr_3987 0.83 +1.4 4,745,827 - Psyr_3987 0.83 -1.2
Or see this region's nucleotide sequence