Experiment: KB with Totarol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3962 and Psyr_3963 are separated by 111 nucleotides Psyr_3963 and Psyr_3964 are separated by 10 nucleotides
Psyr_3962: Psyr_3962 - Glycine cleavage T protein (aminomethyl transferase), at 4,709,531 to 4,710,478
_3962
Psyr_3963: Psyr_3963 - conserved hypothetical protein, at 4,710,590 to 4,711,411
_3963
Psyr_3964: Psyr_3964 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,711,422 to 4,712,804
_3964
Position (kb) 4710
4711
4712 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4710.444 kb on - strand at 4710.503 kb on - strand at 4710.503 kb on - strand at 4710.503 kb on - strand at 4710.719 kb on - strand, within Psyr_3963 at 4710.719 kb on - strand, within Psyr_3963 at 4710.857 kb on + strand, within Psyr_3963 at 4710.857 kb on + strand, within Psyr_3963 at 4710.857 kb on + strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.977 kb on + strand, within Psyr_3963 at 4710.977 kb on + strand, within Psyr_3963 at 4710.977 kb on + strand, within Psyr_3963 at 4710.978 kb on - strand, within Psyr_3963 at 4710.995 kb on + strand, within Psyr_3963 at 4710.995 kb on + strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.244 kb on + strand, within Psyr_3963 at 4711.244 kb on + strand, within Psyr_3963 at 4711.245 kb on - strand, within Psyr_3963 at 4711.245 kb on - strand, within Psyr_3963 at 4711.288 kb on + strand, within Psyr_3963 at 4711.288 kb on + strand, within Psyr_3963 at 4711.288 kb on + strand, within Psyr_3963 at 4711.406 kb on + strand at 4711.406 kb on + strand at 4711.406 kb on + strand at 4711.407 kb on - strand at 4711.410 kb on - strand at 4711.446 kb on + strand at 4711.447 kb on - strand at 4711.629 kb on + strand, within Psyr_3964 at 4711.629 kb on + strand, within Psyr_3964 at 4711.630 kb on - strand, within Psyr_3964 at 4711.645 kb on + strand, within Psyr_3964 at 4711.645 kb on + strand, within Psyr_3964 at 4711.645 kb on + strand, within Psyr_3964 at 4711.646 kb on - strand, within Psyr_3964 at 4711.713 kb on + strand, within Psyr_3964 at 4711.714 kb on - strand, within Psyr_3964 at 4712.106 kb on - strand, within Psyr_3964 at 4712.205 kb on - strand, within Psyr_3964 at 4712.238 kb on + strand, within Psyr_3964 at 4712.239 kb on - strand, within Psyr_3964
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Totarol 10 mM remove 4,710,444 - +0.1 4,710,503 - -0.4 4,710,503 - -1.1 4,710,503 - -1.1 4,710,719 - Psyr_3963 0.16 -2.4 4,710,719 - Psyr_3963 0.16 +0.1 4,710,857 + Psyr_3963 0.32 -0.8 4,710,857 + Psyr_3963 0.32 -1.3 4,710,857 + Psyr_3963 0.32 -0.7 4,710,858 - Psyr_3963 0.33 +1.0 4,710,858 - Psyr_3963 0.33 +2.3 4,710,858 - Psyr_3963 0.33 +3.9 4,710,858 - Psyr_3963 0.33 -0.7 4,710,858 - Psyr_3963 0.33 -0.3 4,710,977 + Psyr_3963 0.47 +0.3 4,710,977 + Psyr_3963 0.47 +1.1 4,710,977 + Psyr_3963 0.47 -0.9 4,710,978 - Psyr_3963 0.47 -0.1 4,710,995 + Psyr_3963 0.49 +1.3 4,710,995 + Psyr_3963 0.49 +0.6 4,711,071 - Psyr_3963 0.59 -0.0 4,711,071 - Psyr_3963 0.59 -1.5 4,711,071 - Psyr_3963 0.59 +0.2 4,711,071 - Psyr_3963 0.59 +0.0 4,711,071 - Psyr_3963 0.59 +2.0 4,711,244 + Psyr_3963 0.80 +2.9 4,711,244 + Psyr_3963 0.80 +0.8 4,711,245 - Psyr_3963 0.80 +1.2 4,711,245 - Psyr_3963 0.80 -0.3 4,711,288 + Psyr_3963 0.85 -1.1 4,711,288 + Psyr_3963 0.85 +0.6 4,711,288 + Psyr_3963 0.85 +1.0 4,711,406 + +1.9 4,711,406 + +1.4 4,711,406 + +1.0 4,711,407 - +1.1 4,711,410 - +0.2 4,711,446 + +0.5 4,711,447 - +0.8 4,711,629 + Psyr_3964 0.15 -1.4 4,711,629 + Psyr_3964 0.15 -1.5 4,711,630 - Psyr_3964 0.15 +0.4 4,711,645 + Psyr_3964 0.16 -0.6 4,711,645 + Psyr_3964 0.16 -0.4 4,711,645 + Psyr_3964 0.16 +0.3 4,711,646 - Psyr_3964 0.16 -1.7 4,711,713 + Psyr_3964 0.21 +1.7 4,711,714 - Psyr_3964 0.21 -0.7 4,712,106 - Psyr_3964 0.49 +3.9 4,712,205 - Psyr_3964 0.57 +0.7 4,712,238 + Psyr_3964 0.59 -0.5 4,712,239 - Psyr_3964 0.59 +1.6
Or see this region's nucleotide sequence