Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3645

Experiment: KB with Totarol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3644 and Psyr_3645 are separated by 57 nucleotidesPsyr_3645 and Psyr_3646 overlap by 1 nucleotides Psyr_3644: Psyr_3644 - prephenate dehydrogenase, at 4,326,491 to 4,328,095 _3644 Psyr_3645: Psyr_3645 - prephenate dehydratase, at 4,328,153 to 4,329,247 _3645 Psyr_3646: Psyr_3646 - phosphoserine aminotransferase apoenzyme, at 4,329,247 to 4,330,332 _3646 Position (kb) 4328 4329 4330Strain fitness (log2 ratio) -3 -2 -1 0 1at 4327.245 kb on - strand, within Psyr_3644at 4327.547 kb on + strand, within Psyr_3644at 4328.104 kb on - strandat 4328.104 kb on - strandat 4328.104 kb on - strandat 4328.104 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Totarol 10 mM
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4,327,245 - Psyr_3644 0.47 -0.6
4,327,547 + Psyr_3644 0.66 -1.0
4,328,104 - +0.4
4,328,104 - +1.3
4,328,104 - -3.1
4,328,104 - -0.5

Or see this region's nucleotide sequence