Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3545

Experiment: KB with Totarol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3544 and Psyr_3545 are separated by 101 nucleotidesPsyr_3545 and Psyr_3546 are separated by 138 nucleotides Psyr_3544: Psyr_3544 - putative integral membrane protein, at 4,221,692 to 4,222,666 _3544 Psyr_3545: Psyr_3545 - Short-chain dehydrogenase/reductase SDR, at 4,222,768 to 4,223,511 _3545 Psyr_3546: Psyr_3546 - transcriptional regulator, AraC family, at 4,223,650 to 4,224,558 _3546 Position (kb) 4222 4223 4224Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4221.828 kb on + strand, within Psyr_3544at 4221.828 kb on + strand, within Psyr_3544at 4221.828 kb on + strand, within Psyr_3544at 4221.828 kb on + strand, within Psyr_3544at 4221.828 kb on + strand, within Psyr_3544at 4221.828 kb on + strand, within Psyr_3544at 4221.829 kb on - strand, within Psyr_3544at 4221.829 kb on - strand, within Psyr_3544at 4221.829 kb on - strand, within Psyr_3544at 4221.829 kb on - strand, within Psyr_3544at 4221.829 kb on - strand, within Psyr_3544at 4221.829 kb on - strand, within Psyr_3544at 4221.829 kb on - strand, within Psyr_3544at 4221.829 kb on - strand, within Psyr_3544at 4221.832 kb on + strand, within Psyr_3544at 4221.832 kb on + strand, within Psyr_3544at 4221.832 kb on + strand, within Psyr_3544at 4221.832 kb on + strand, within Psyr_3544at 4221.833 kb on - strand, within Psyr_3544at 4221.833 kb on - strand, within Psyr_3544at 4221.833 kb on - strand, within Psyr_3544at 4221.833 kb on - strand, within Psyr_3544at 4221.833 kb on - strand, within Psyr_3544at 4221.833 kb on - strand, within Psyr_3544at 4221.835 kb on - strand, within Psyr_3544at 4221.989 kb on - strand, within Psyr_3544at 4222.583 kb on + strandat 4222.584 kb on - strandat 4222.648 kb on - strandat 4222.648 kb on - strandat 4222.648 kb on - strandat 4222.738 kb on + strandat 4222.739 kb on - strandat 4222.779 kb on - strandat 4222.798 kb on - strandat 4222.964 kb on - strand, within Psyr_3545at 4222.978 kb on + strand, within Psyr_3545at 4222.979 kb on - strand, within Psyr_3545at 4223.007 kb on + strand, within Psyr_3545at 4223.008 kb on - strand, within Psyr_3545at 4223.008 kb on - strand, within Psyr_3545at 4223.008 kb on - strand, within Psyr_3545at 4223.008 kb on - strand, within Psyr_3545at 4223.009 kb on + strand, within Psyr_3545at 4223.009 kb on + strand, within Psyr_3545at 4223.417 kb on + strand, within Psyr_3545at 4223.417 kb on + strand, within Psyr_3545at 4223.417 kb on + strand, within Psyr_3545at 4223.417 kb on + strand, within Psyr_3545at 4223.417 kb on + strand, within Psyr_3545at 4223.418 kb on - strand, within Psyr_3545at 4223.418 kb on - strand, within Psyr_3545at 4223.573 kb on - strandat 4223.720 kb on + strandat 4223.720 kb on + strandat 4223.720 kb on + strandat 4223.720 kb on + strandat 4223.721 kb on - strandat 4223.760 kb on + strand, within Psyr_3546at 4223.760 kb on + strand, within Psyr_3546at 4223.760 kb on + strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.761 kb on - strand, within Psyr_3546at 4223.845 kb on + strand, within Psyr_3546at 4223.845 kb on + strand, within Psyr_3546at 4223.845 kb on + strand, within Psyr_3546at 4223.860 kb on + strand, within Psyr_3546at 4223.861 kb on - strand, within Psyr_3546at 4223.861 kb on - strand, within Psyr_3546at 4223.861 kb on - strand, within Psyr_3546at 4223.926 kb on + strand, within Psyr_3546at 4223.927 kb on - strand, within Psyr_3546at 4224.122 kb on - strand, within Psyr_3546at 4224.136 kb on - strand, within Psyr_3546at 4224.136 kb on - strand, within Psyr_3546at 4224.146 kb on + strand, within Psyr_3546at 4224.146 kb on + strand, within Psyr_3546at 4224.349 kb on + strand, within Psyr_3546

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Totarol 10 mM
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4,221,828 + Psyr_3544 0.14 -0.2
4,221,828 + Psyr_3544 0.14 -3.2
4,221,828 + Psyr_3544 0.14 -0.5
4,221,828 + Psyr_3544 0.14 -1.4
4,221,828 + Psyr_3544 0.14 -0.2
4,221,828 + Psyr_3544 0.14 +1.6
4,221,829 - Psyr_3544 0.14 -1.0
4,221,829 - Psyr_3544 0.14 -0.2
4,221,829 - Psyr_3544 0.14 -2.1
4,221,829 - Psyr_3544 0.14 +0.7
4,221,829 - Psyr_3544 0.14 +0.4
4,221,829 - Psyr_3544 0.14 +0.4
4,221,829 - Psyr_3544 0.14 +1.1
4,221,829 - Psyr_3544 0.14 -0.5
4,221,832 + Psyr_3544 0.14 +0.9
4,221,832 + Psyr_3544 0.14 -1.5
4,221,832 + Psyr_3544 0.14 -0.6
4,221,832 + Psyr_3544 0.14 -0.9
4,221,833 - Psyr_3544 0.14 +2.8
4,221,833 - Psyr_3544 0.14 -0.6
4,221,833 - Psyr_3544 0.14 +0.2
4,221,833 - Psyr_3544 0.14 -0.1
4,221,833 - Psyr_3544 0.14 -1.1
4,221,833 - Psyr_3544 0.14 -0.0
4,221,835 - Psyr_3544 0.15 -0.5
4,221,989 - Psyr_3544 0.30 +3.7
4,222,583 + +0.8
4,222,584 - +0.0
4,222,648 - +1.1
4,222,648 - +1.4
4,222,648 - +2.3
4,222,738 + +3.3
4,222,739 - +0.8
4,222,779 - +0.3
4,222,798 - -0.6
4,222,964 - Psyr_3545 0.26 -0.0
4,222,978 + Psyr_3545 0.28 +3.9
4,222,979 - Psyr_3545 0.28 +1.7
4,223,007 + Psyr_3545 0.32 +0.4
4,223,008 - Psyr_3545 0.32 -0.5
4,223,008 - Psyr_3545 0.32 -0.5
4,223,008 - Psyr_3545 0.32 -0.0
4,223,008 - Psyr_3545 0.32 +0.1
4,223,009 + Psyr_3545 0.32 +0.3
4,223,009 + Psyr_3545 0.32 +1.3
4,223,417 + Psyr_3545 0.87 +0.8
4,223,417 + Psyr_3545 0.87 -2.0
4,223,417 + Psyr_3545 0.87 -0.4
4,223,417 + Psyr_3545 0.87 +0.5
4,223,417 + Psyr_3545 0.87 +0.3
4,223,418 - Psyr_3545 0.87 +0.2
4,223,418 - Psyr_3545 0.87 -1.5
4,223,573 - -0.2
4,223,720 + -0.8
4,223,720 + -0.3
4,223,720 + -0.2
4,223,720 + -0.9
4,223,721 - +0.8
4,223,760 + Psyr_3546 0.12 +0.0
4,223,760 + Psyr_3546 0.12 -0.5
4,223,760 + Psyr_3546 0.12 +0.0
4,223,761 - Psyr_3546 0.12 -0.8
4,223,761 - Psyr_3546 0.12 +2.9
4,223,761 - Psyr_3546 0.12 -0.3
4,223,761 - Psyr_3546 0.12 +1.7
4,223,761 - Psyr_3546 0.12 +2.9
4,223,845 + Psyr_3546 0.21 -1.0
4,223,845 + Psyr_3546 0.21 +0.2
4,223,845 + Psyr_3546 0.21 -0.4
4,223,860 + Psyr_3546 0.23 -0.7
4,223,861 - Psyr_3546 0.23 -1.0
4,223,861 - Psyr_3546 0.23 -2.4
4,223,861 - Psyr_3546 0.23 +0.8
4,223,926 + Psyr_3546 0.30 +1.9
4,223,927 - Psyr_3546 0.30 +0.2
4,224,122 - Psyr_3546 0.52 +1.3
4,224,136 - Psyr_3546 0.53 +0.2
4,224,136 - Psyr_3546 0.53 -0.0
4,224,146 + Psyr_3546 0.55 -0.8
4,224,146 + Psyr_3546 0.55 +0.2
4,224,349 + Psyr_3546 0.77 +0.3

Or see this region's nucleotide sequence