Experiment: KB with Totarol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0062 and Psyr_0063 are separated by 232 nucleotides Psyr_0063 and Psyr_0064 overlap by 4 nucleotides
Psyr_0062: Psyr_0062 - hydroxymethylbilane synthase, at 61,471 to 62,412
_0062
Psyr_0063: Psyr_0063 - Two-component response regulator AlgR, at 62,645 to 63,391
_0063
Psyr_0064: Psyr_0064 - Sensory transduction protein kinase AlgZ, at 63,388 to 64,470
_0064
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 62.447 kb on + strand at 62.448 kb on - strand at 62.448 kb on - strand at 62.646 kb on + strand at 62.769 kb on - strand, within Psyr_0063 at 62.892 kb on + strand, within Psyr_0063 at 62.892 kb on + strand, within Psyr_0063 at 62.892 kb on + strand, within Psyr_0063 at 62.892 kb on + strand, within Psyr_0063 at 62.892 kb on + strand, within Psyr_0063 at 62.892 kb on + strand, within Psyr_0063 at 62.893 kb on - strand, within Psyr_0063 at 62.893 kb on - strand, within Psyr_0063 at 62.893 kb on - strand, within Psyr_0063 at 62.893 kb on - strand, within Psyr_0063 at 62.893 kb on - strand, within Psyr_0063 at 62.893 kb on - strand, within Psyr_0063 at 62.893 kb on - strand, within Psyr_0063 at 62.913 kb on + strand, within Psyr_0063 at 62.913 kb on + strand, within Psyr_0063 at 62.913 kb on + strand, within Psyr_0063 at 62.913 kb on + strand, within Psyr_0063 at 62.913 kb on + strand, within Psyr_0063 at 62.913 kb on + strand, within Psyr_0063 at 62.913 kb on + strand, within Psyr_0063 at 62.913 kb on + strand, within Psyr_0063 at 62.914 kb on - strand, within Psyr_0063 at 62.914 kb on - strand, within Psyr_0063 at 62.914 kb on - strand, within Psyr_0063 at 62.914 kb on - strand, within Psyr_0063 at 62.914 kb on - strand, within Psyr_0063 at 62.914 kb on - strand, within Psyr_0063 at 62.914 kb on - strand, within Psyr_0063 at 62.914 kb on - strand, within Psyr_0063 at 62.914 kb on - strand, within Psyr_0063 at 63.096 kb on + strand, within Psyr_0063 at 63.242 kb on + strand, within Psyr_0063 at 63.242 kb on + strand, within Psyr_0063 at 63.242 kb on + strand, within Psyr_0063 at 63.242 kb on + strand, within Psyr_0063 at 63.242 kb on + strand, within Psyr_0063 at 63.243 kb on - strand, within Psyr_0063 at 63.243 kb on - strand, within Psyr_0063 at 63.243 kb on - strand, within Psyr_0063 at 63.243 kb on - strand, within Psyr_0063 at 63.243 kb on - strand, within Psyr_0063 at 63.243 kb on - strand, within Psyr_0063 at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.391 kb on + strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.392 kb on - strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.393 kb on + strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.394 kb on - strand at 63.433 kb on + strand at 63.434 kb on - strand at 63.444 kb on - strand at 63.444 kb on - strand at 63.444 kb on - strand at 63.444 kb on - strand at 63.514 kb on + strand, within Psyr_0064 at 63.514 kb on + strand, within Psyr_0064 at 63.514 kb on + strand, within Psyr_0064 at 63.514 kb on + strand, within Psyr_0064 at 63.515 kb on - strand, within Psyr_0064 at 63.515 kb on - strand, within Psyr_0064 at 63.515 kb on - strand, within Psyr_0064 at 63.515 kb on - strand, within Psyr_0064 at 63.515 kb on - strand, within Psyr_0064 at 63.515 kb on - strand, within Psyr_0064 at 63.515 kb on - strand, within Psyr_0064 at 63.515 kb on - strand, within Psyr_0064 at 63.516 kb on + strand, within Psyr_0064 at 63.592 kb on + strand, within Psyr_0064 at 63.592 kb on + strand, within Psyr_0064 at 63.593 kb on - strand, within Psyr_0064 at 63.593 kb on - strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.611 kb on + strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.612 kb on - strand, within Psyr_0064 at 63.628 kb on + strand, within Psyr_0064 at 63.628 kb on + strand, within Psyr_0064 at 63.628 kb on + strand, within Psyr_0064 at 63.628 kb on + strand, within Psyr_0064 at 63.629 kb on - strand, within Psyr_0064 at 63.629 kb on - strand, within Psyr_0064 at 63.663 kb on - strand, within Psyr_0064 at 63.663 kb on - strand, within Psyr_0064 at 63.682 kb on + strand, within Psyr_0064 at 63.682 kb on + strand, within Psyr_0064 at 63.683 kb on - strand, within Psyr_0064 at 63.752 kb on - strand, within Psyr_0064 at 63.784 kb on + strand, within Psyr_0064 at 63.785 kb on - strand, within Psyr_0064 at 63.788 kb on + strand, within Psyr_0064 at 63.788 kb on + strand, within Psyr_0064 at 63.789 kb on - strand, within Psyr_0064 at 63.789 kb on - strand, within Psyr_0064 at 64.031 kb on + strand, within Psyr_0064 at 64.032 kb on - strand, within Psyr_0064 at 64.032 kb on - strand, within Psyr_0064 at 64.032 kb on - strand, within Psyr_0064 at 64.037 kb on + strand, within Psyr_0064 at 64.037 kb on + strand, within Psyr_0064 at 64.088 kb on + strand, within Psyr_0064 at 64.089 kb on - strand, within Psyr_0064 at 64.089 kb on - strand, within Psyr_0064 at 64.089 kb on - strand, within Psyr_0064
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Totarol 10 mM remove 62,447 + -1.8 62,448 - -1.1 62,448 - -0.8 62,646 + -0.6 62,769 - Psyr_0063 0.17 -1.6 62,892 + Psyr_0063 0.33 -0.6 62,892 + Psyr_0063 0.33 +2.8 62,892 + Psyr_0063 0.33 -0.6 62,892 + Psyr_0063 0.33 -1.5 62,892 + Psyr_0063 0.33 -0.7 62,892 + Psyr_0063 0.33 -0.8 62,893 - Psyr_0063 0.33 -1.2 62,893 - Psyr_0063 0.33 -0.3 62,893 - Psyr_0063 0.33 -0.3 62,893 - Psyr_0063 0.33 +0.2 62,893 - Psyr_0063 0.33 -3.0 62,893 - Psyr_0063 0.33 -0.1 62,893 - Psyr_0063 0.33 +0.4 62,913 + Psyr_0063 0.36 -1.3 62,913 + Psyr_0063 0.36 -1.4 62,913 + Psyr_0063 0.36 -2.2 62,913 + Psyr_0063 0.36 +1.3 62,913 + Psyr_0063 0.36 -0.1 62,913 + Psyr_0063 0.36 -0.8 62,913 + Psyr_0063 0.36 -0.6 62,913 + Psyr_0063 0.36 +0.3 62,914 - Psyr_0063 0.36 +1.2 62,914 - Psyr_0063 0.36 -2.2 62,914 - Psyr_0063 0.36 -0.5 62,914 - Psyr_0063 0.36 +1.0 62,914 - Psyr_0063 0.36 +0.7 62,914 - Psyr_0063 0.36 +1.0 62,914 - Psyr_0063 0.36 -0.4 62,914 - Psyr_0063 0.36 -0.4 62,914 - Psyr_0063 0.36 -0.0 63,096 + Psyr_0063 0.60 -1.0 63,242 + Psyr_0063 0.80 -0.8 63,242 + Psyr_0063 0.80 -0.3 63,242 + Psyr_0063 0.80 +0.1 63,242 + Psyr_0063 0.80 +0.9 63,242 + Psyr_0063 0.80 -1.2 63,243 - Psyr_0063 0.80 +5.1 63,243 - Psyr_0063 0.80 -3.2 63,243 - Psyr_0063 0.80 -0.7 63,243 - Psyr_0063 0.80 -0.9 63,243 - Psyr_0063 0.80 -0.5 63,243 - Psyr_0063 0.80 +1.0 63,391 + +1.4 63,391 + -2.0 63,391 + +0.7 63,391 + +1.5 63,391 + +0.2 63,391 + +0.2 63,392 - +0.2 63,392 - -0.1 63,392 - +0.2 63,392 - -1.7 63,392 - +0.2 63,392 - +0.2 63,392 - -0.3 63,392 - -1.0 63,393 + -0.8 63,393 + -1.4 63,393 + -1.2 63,393 + -0.9 63,393 + +0.5 63,393 + -1.8 63,393 + +0.6 63,393 + +1.4 63,393 + +0.8 63,393 + +0.1 63,393 + +1.5 63,393 + -0.6 63,393 + +1.1 63,393 + +0.3 63,393 + -1.8 63,393 + -2.4 63,393 + +3.3 63,393 + -1.5 63,393 + -1.3 63,393 + -0.0 63,394 - -0.2 63,394 - -0.6 63,394 - +1.1 63,394 - +1.1 63,394 - +0.4 63,394 - +0.0 63,394 - -2.4 63,394 - -1.2 63,394 - +2.1 63,394 - -1.0 63,394 - -0.5 63,394 - -1.2 63,394 - +0.4 63,394 - -1.4 63,433 + -0.4 63,434 - -0.7 63,444 - +0.2 63,444 - -0.6 63,444 - +0.6 63,444 - -0.8 63,514 + Psyr_0064 0.12 -0.3 63,514 + Psyr_0064 0.12 +0.4 63,514 + Psyr_0064 0.12 -0.8 63,514 + Psyr_0064 0.12 +0.5 63,515 - Psyr_0064 0.12 -0.5 63,515 - Psyr_0064 0.12 +0.3 63,515 - Psyr_0064 0.12 +0.3 63,515 - Psyr_0064 0.12 -1.2 63,515 - Psyr_0064 0.12 -1.0 63,515 - Psyr_0064 0.12 -1.2 63,515 - Psyr_0064 0.12 -0.2 63,515 - Psyr_0064 0.12 -0.0 63,516 + Psyr_0064 0.12 +2.5 63,592 + Psyr_0064 0.19 +0.1 63,592 + Psyr_0064 0.19 +0.0 63,593 - Psyr_0064 0.19 +0.1 63,593 - Psyr_0064 0.19 +1.2 63,611 + Psyr_0064 0.21 +0.4 63,611 + Psyr_0064 0.21 -0.1 63,611 + Psyr_0064 0.21 +0.2 63,611 + Psyr_0064 0.21 +0.7 63,611 + Psyr_0064 0.21 -2.2 63,611 + Psyr_0064 0.21 +0.4 63,611 + Psyr_0064 0.21 +0.1 63,611 + Psyr_0064 0.21 +0.2 63,611 + Psyr_0064 0.21 +1.2 63,611 + Psyr_0064 0.21 +0.8 63,612 - Psyr_0064 0.21 -0.6 63,612 - Psyr_0064 0.21 -0.0 63,612 - Psyr_0064 0.21 -2.0 63,612 - Psyr_0064 0.21 -0.3 63,612 - Psyr_0064 0.21 -2.0 63,612 - Psyr_0064 0.21 -1.5 63,612 - Psyr_0064 0.21 +0.1 63,612 - Psyr_0064 0.21 +0.2 63,612 - Psyr_0064 0.21 +0.0 63,612 - Psyr_0064 0.21 -0.0 63,612 - Psyr_0064 0.21 -1.2 63,628 + Psyr_0064 0.22 +0.7 63,628 + Psyr_0064 0.22 -0.6 63,628 + Psyr_0064 0.22 -1.6 63,628 + Psyr_0064 0.22 -1.5 63,629 - Psyr_0064 0.22 -0.5 63,629 - Psyr_0064 0.22 -1.2 63,663 - Psyr_0064 0.25 -1.3 63,663 - Psyr_0064 0.25 -0.1 63,682 + Psyr_0064 0.27 +0.4 63,682 + Psyr_0064 0.27 -1.3 63,683 - Psyr_0064 0.27 -0.7 63,752 - Psyr_0064 0.34 +0.8 63,784 + Psyr_0064 0.37 +0.6 63,785 - Psyr_0064 0.37 -0.5 63,788 + Psyr_0064 0.37 -0.6 63,788 + Psyr_0064 0.37 +0.6 63,789 - Psyr_0064 0.37 -0.9 63,789 - Psyr_0064 0.37 -0.1 64,031 + Psyr_0064 0.59 +1.9 64,032 - Psyr_0064 0.59 +0.9 64,032 - Psyr_0064 0.59 +0.7 64,032 - Psyr_0064 0.59 -1.7 64,037 + Psyr_0064 0.60 -1.3 64,037 + Psyr_0064 0.60 -2.3 64,088 + Psyr_0064 0.65 -0.9 64,089 - Psyr_0064 0.65 -0.3 64,089 - Psyr_0064 0.65 -0.2 64,089 - Psyr_0064 0.65 -0.5
Or see this region's nucleotide sequence