Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_860

Experiment: LB control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_859 and PfGW456L13_860 are separated by 263 nucleotidesPfGW456L13_860 and PfGW456L13_861 are separated by 177 nucleotidesPfGW456L13_861 and PfGW456L13_862 are separated by 60 nucleotides PfGW456L13_859 - Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 965,453 to 966,691 _859 PfGW456L13_860 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 966,955 to 967,506 _860 PfGW456L13_861 - Regulator of sigma D, at 967,684 to 968,142 _861 PfGW456L13_862 - Macrophage infectivity potentiator, at 968,203 to 968,868 _862 Position (kb) 966 967 968Strain fitness (log2 ratio) -2 -1 0 1 2 3at 966.275 kb on + strand, within PfGW456L13_859at 966.276 kb on - strand, within PfGW456L13_859at 966.276 kb on - strand, within PfGW456L13_859at 966.350 kb on + strand, within PfGW456L13_859at 966.350 kb on + strand, within PfGW456L13_859at 966.374 kb on + strand, within PfGW456L13_859at 966.374 kb on + strand, within PfGW456L13_859at 966.480 kb on + strand, within PfGW456L13_859at 966.480 kb on + strand, within PfGW456L13_859at 966.480 kb on + strand, within PfGW456L13_859at 966.480 kb on + strand, within PfGW456L13_859at 966.481 kb on - strand, within PfGW456L13_859at 966.481 kb on - strand, within PfGW456L13_859at 966.518 kb on + strand, within PfGW456L13_859at 966.518 kb on + strand, within PfGW456L13_859at 966.540 kb on + strand, within PfGW456L13_859at 966.773 kb on + strandat 966.773 kb on + strandat 966.774 kb on - strandat 966.774 kb on - strandat 966.774 kb on - strandat 966.774 kb on - strandat 966.774 kb on - strandat 966.816 kb on - strandat 966.825 kb on + strandat 966.825 kb on + strandat 966.825 kb on + strandat 966.825 kb on + strandat 966.826 kb on - strandat 966.826 kb on - strandat 966.826 kb on - strandat 966.826 kb on - strandat 966.826 kb on - strandat 966.826 kb on - strandat 966.832 kb on + strandat 966.833 kb on - strandat 966.860 kb on + strandat 966.860 kb on + strandat 966.861 kb on - strandat 966.919 kb on - strandat 966.923 kb on + strandat 966.937 kb on + strandat 966.938 kb on - strandat 966.938 kb on - strandat 967.027 kb on + strand, within PfGW456L13_860at 967.027 kb on + strand, within PfGW456L13_860at 967.028 kb on - strand, within PfGW456L13_860at 967.028 kb on - strand, within PfGW456L13_860at 967.028 kb on - strand, within PfGW456L13_860at 967.030 kb on + strand, within PfGW456L13_860at 967.030 kb on + strand, within PfGW456L13_860at 967.031 kb on - strand, within PfGW456L13_860at 967.039 kb on + strand, within PfGW456L13_860at 967.039 kb on + strand, within PfGW456L13_860at 967.039 kb on + strand, within PfGW456L13_860at 967.039 kb on + strand, within PfGW456L13_860at 967.040 kb on - strand, within PfGW456L13_860at 967.159 kb on + strand, within PfGW456L13_860at 967.159 kb on + strand, within PfGW456L13_860at 967.159 kb on + strand, within PfGW456L13_860at 967.159 kb on + strand, within PfGW456L13_860at 967.307 kb on + strand, within PfGW456L13_860at 967.308 kb on - strand, within PfGW456L13_860at 967.423 kb on + strand, within PfGW456L13_860at 967.505 kb on - strandat 967.514 kb on + strandat 967.514 kb on + strandat 967.514 kb on + strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.515 kb on - strandat 967.524 kb on - strandat 967.524 kb on - strandat 967.534 kb on + strandat 967.534 kb on + strandat 967.535 kb on - strandat 967.561 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.589 kb on + strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.590 kb on - strandat 967.630 kb on + strandat 967.630 kb on + strandat 967.630 kb on + strandat 967.630 kb on + strandat 967.630 kb on + strandat 967.631 kb on - strandat 967.631 kb on - strandat 967.631 kb on - strandat 967.631 kb on - strandat 967.649 kb on + strandat 967.650 kb on - strandat 967.780 kb on + strand, within PfGW456L13_861at 967.780 kb on + strand, within PfGW456L13_861at 967.781 kb on - strand, within PfGW456L13_861at 967.781 kb on - strand, within PfGW456L13_861at 967.861 kb on + strand, within PfGW456L13_861at 967.861 kb on + strand, within PfGW456L13_861at 967.861 kb on + strand, within PfGW456L13_861at 967.861 kb on + strand, within PfGW456L13_861at 967.862 kb on - strand, within PfGW456L13_861at 967.862 kb on - strand, within PfGW456L13_861at 967.862 kb on - strand, within PfGW456L13_861at 967.862 kb on - strand, within PfGW456L13_861at 967.866 kb on - strand, within PfGW456L13_861at 967.888 kb on + strand, within PfGW456L13_861at 967.888 kb on + strand, within PfGW456L13_861at 967.889 kb on - strand, within PfGW456L13_861at 967.889 kb on - strand, within PfGW456L13_861at 967.957 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.019 kb on + strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.020 kb on - strand, within PfGW456L13_861at 968.285 kb on + strand, within PfGW456L13_862at 968.285 kb on + strand, within PfGW456L13_862at 968.286 kb on - strand, within PfGW456L13_862at 968.286 kb on - strand, within PfGW456L13_862at 968.286 kb on - strand, within PfGW456L13_862at 968.437 kb on - strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.438 kb on + strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.439 kb on - strand, within PfGW456L13_862at 968.481 kb on + strand, within PfGW456L13_862at 968.481 kb on + strand, within PfGW456L13_862at 968.482 kb on - strand, within PfGW456L13_862

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Per-strain Table

Position Strand Gene LocusTag Fraction LB control
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966,275 + PfGW456L13_859 0.66 +0.8
966,276 - PfGW456L13_859 0.66 -0.3
966,276 - PfGW456L13_859 0.66 +1.8
966,350 + PfGW456L13_859 0.72 +0.7
966,350 + PfGW456L13_859 0.72 -1.9
966,374 + PfGW456L13_859 0.74 -0.9
966,374 + PfGW456L13_859 0.74 +0.0
966,480 + PfGW456L13_859 0.83 +0.2
966,480 + PfGW456L13_859 0.83 -2.0
966,480 + PfGW456L13_859 0.83 +0.8
966,480 + PfGW456L13_859 0.83 -0.4
966,481 - PfGW456L13_859 0.83 -0.2
966,481 - PfGW456L13_859 0.83 +0.8
966,518 + PfGW456L13_859 0.86 +0.8
966,518 + PfGW456L13_859 0.86 -1.1
966,540 + PfGW456L13_859 0.88 -0.2
966,773 + -1.8
966,773 + -0.9
966,774 - +0.7
966,774 - -0.2
966,774 - -0.5
966,774 - +0.6
966,774 - +0.0
966,816 - -1.0
966,825 + +0.8
966,825 + -1.5
966,825 + +0.1
966,825 + +0.2
966,826 - +0.5
966,826 - +0.4
966,826 - +1.1
966,826 - +0.9
966,826 - +0.6
966,826 - +0.8
966,832 + -0.9
966,833 - -0.4
966,860 + +0.1
966,860 + +0.3
966,861 - +0.8
966,919 - +0.0
966,923 + +0.2
966,937 + +0.4
966,938 - +0.3
966,938 - -0.7
967,027 + PfGW456L13_860 0.13 -0.9
967,027 + PfGW456L13_860 0.13 +0.2
967,028 - PfGW456L13_860 0.13 +1.2
967,028 - PfGW456L13_860 0.13 -1.2
967,028 - PfGW456L13_860 0.13 -0.8
967,030 + PfGW456L13_860 0.14 +0.2
967,030 + PfGW456L13_860 0.14 +0.9
967,031 - PfGW456L13_860 0.14 -0.2
967,039 + PfGW456L13_860 0.15 -0.7
967,039 + PfGW456L13_860 0.15 -0.8
967,039 + PfGW456L13_860 0.15 -0.5
967,039 + PfGW456L13_860 0.15 -0.2
967,040 - PfGW456L13_860 0.15 -0.2
967,159 + PfGW456L13_860 0.37 +1.7
967,159 + PfGW456L13_860 0.37 -0.4
967,159 + PfGW456L13_860 0.37 +0.3
967,159 + PfGW456L13_860 0.37 -0.5
967,307 + PfGW456L13_860 0.64 +0.2
967,308 - PfGW456L13_860 0.64 -1.6
967,423 + PfGW456L13_860 0.85 -0.0
967,505 - +0.4
967,514 + +0.3
967,514 + -0.5
967,514 + +0.5
967,515 - -0.7
967,515 - -1.3
967,515 - -0.8
967,515 - -2.1
967,515 - -0.4
967,515 - -1.5
967,515 - -1.2
967,524 - -1.5
967,524 - -1.4
967,534 + -0.5
967,534 + -0.9
967,535 - -1.2
967,561 + +1.1
967,589 + +0.5
967,589 + -0.5
967,589 + +0.8
967,589 + -0.1
967,589 + +0.3
967,589 + +0.5
967,589 + -0.8
967,589 + -1.2
967,589 + -0.4
967,589 + -1.4
967,590 - -1.1
967,590 - -0.8
967,590 - -1.0
967,590 - -0.2
967,590 - -0.4
967,590 - -0.6
967,590 - -0.8
967,630 + -0.4
967,630 + +0.5
967,630 + +0.9
967,630 + -1.2
967,630 + -1.3
967,631 - -0.3
967,631 - -0.4
967,631 - -1.6
967,631 - -1.1
967,649 + +0.5
967,650 - -0.9
967,780 + PfGW456L13_861 0.21 -1.6
967,780 + PfGW456L13_861 0.21 +0.3
967,781 - PfGW456L13_861 0.21 +0.4
967,781 - PfGW456L13_861 0.21 +3.1
967,861 + PfGW456L13_861 0.39 -0.7
967,861 + PfGW456L13_861 0.39 -1.8
967,861 + PfGW456L13_861 0.39 -0.6
967,861 + PfGW456L13_861 0.39 -1.8
967,862 - PfGW456L13_861 0.39 -1.4
967,862 - PfGW456L13_861 0.39 -1.5
967,862 - PfGW456L13_861 0.39 -2.3
967,862 - PfGW456L13_861 0.39 -0.9
967,866 - PfGW456L13_861 0.40 +0.0
967,888 + PfGW456L13_861 0.44 -0.4
967,888 + PfGW456L13_861 0.44 -0.6
967,889 - PfGW456L13_861 0.45 -0.4
967,889 - PfGW456L13_861 0.45 -0.1
967,957 + PfGW456L13_861 0.59 -0.2
968,019 + PfGW456L13_861 0.73 -0.7
968,019 + PfGW456L13_861 0.73 -0.8
968,019 + PfGW456L13_861 0.73 -0.8
968,019 + PfGW456L13_861 0.73 -1.4
968,019 + PfGW456L13_861 0.73 +0.8
968,019 + PfGW456L13_861 0.73 -0.6
968,019 + PfGW456L13_861 0.73 -0.1
968,019 + PfGW456L13_861 0.73 -1.5
968,020 - PfGW456L13_861 0.73 -1.9
968,020 - PfGW456L13_861 0.73 +0.5
968,020 - PfGW456L13_861 0.73 -0.5
968,020 - PfGW456L13_861 0.73 -1.3
968,020 - PfGW456L13_861 0.73 -0.6
968,020 - PfGW456L13_861 0.73 -2.0
968,020 - PfGW456L13_861 0.73 -1.0
968,020 - PfGW456L13_861 0.73 -0.3
968,020 - PfGW456L13_861 0.73 -1.3
968,020 - PfGW456L13_861 0.73 -0.7
968,020 - PfGW456L13_861 0.73 -0.9
968,020 - PfGW456L13_861 0.73 -1.2
968,020 - PfGW456L13_861 0.73 -1.6
968,285 + PfGW456L13_862 0.12 +1.1
968,285 + PfGW456L13_862 0.12 +0.2
968,286 - PfGW456L13_862 0.12 -0.2
968,286 - PfGW456L13_862 0.12 -1.3
968,286 - PfGW456L13_862 0.12 -1.1
968,437 - PfGW456L13_862 0.35 -1.0
968,438 + PfGW456L13_862 0.35 +0.5
968,438 + PfGW456L13_862 0.35 +0.4
968,438 + PfGW456L13_862 0.35 -0.0
968,438 + PfGW456L13_862 0.35 -0.1
968,438 + PfGW456L13_862 0.35 -1.5
968,438 + PfGW456L13_862 0.35 -0.4
968,438 + PfGW456L13_862 0.35 -0.1
968,438 + PfGW456L13_862 0.35 -0.7
968,438 + PfGW456L13_862 0.35 -1.2
968,438 + PfGW456L13_862 0.35 -0.2
968,438 + PfGW456L13_862 0.35 +0.5
968,439 - PfGW456L13_862 0.35 -1.3
968,439 - PfGW456L13_862 0.35 -0.9
968,439 - PfGW456L13_862 0.35 -0.2
968,439 - PfGW456L13_862 0.35 +0.2
968,439 - PfGW456L13_862 0.35 +0.2
968,439 - PfGW456L13_862 0.35 -0.3
968,439 - PfGW456L13_862 0.35 +0.5
968,439 - PfGW456L13_862 0.35 +0.1
968,439 - PfGW456L13_862 0.35 -0.9
968,439 - PfGW456L13_862 0.35 -0.3
968,439 - PfGW456L13_862 0.35 -0.6
968,439 - PfGW456L13_862 0.35 +0.0
968,481 + PfGW456L13_862 0.42 -0.1
968,481 + PfGW456L13_862 0.42 +0.5
968,482 - PfGW456L13_862 0.42 -0.1

Or see this region's nucleotide sequence