Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_696

Experiment: LB control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_695 and PfGW456L13_696 are separated by 3 nucleotidesPfGW456L13_696 and PfGW456L13_697 are separated by 145 nucleotidesPfGW456L13_697 and PfGW456L13_698 are separated by 112 nucleotides PfGW456L13_695 - FIG00964095: hypothetical protein, at 790,093 to 792,210 _695 PfGW456L13_696 - L-lysine permease, at 792,214 to 792,843 _696 PfGW456L13_697 - Transcriptional regulator, AsnC family, at 792,989 to 793,462 _697 PfGW456L13_698 - Dihydrolipoamide dehydrogenase (EC 1.8.1.4), at 793,575 to 794,975 _698 Position (kb) 792 793Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 791.245 kb on + strand, within PfGW456L13_695at 791.246 kb on - strand, within PfGW456L13_695at 791.338 kb on + strand, within PfGW456L13_695at 791.356 kb on + strand, within PfGW456L13_695at 791.356 kb on + strand, within PfGW456L13_695at 791.357 kb on - strand, within PfGW456L13_695at 791.357 kb on - strand, within PfGW456L13_695at 791.357 kb on - strand, within PfGW456L13_695at 791.357 kb on - strand, within PfGW456L13_695at 791.417 kb on - strand, within PfGW456L13_695at 791.417 kb on - strand, within PfGW456L13_695at 791.420 kb on + strand, within PfGW456L13_695at 791.420 kb on + strand, within PfGW456L13_695at 791.420 kb on + strand, within PfGW456L13_695at 791.420 kb on + strand, within PfGW456L13_695at 791.421 kb on - strand, within PfGW456L13_695at 791.421 kb on - strand, within PfGW456L13_695at 791.421 kb on - strand, within PfGW456L13_695at 791.421 kb on - strand, within PfGW456L13_695at 791.421 kb on - strand, within PfGW456L13_695at 791.421 kb on - strand, within PfGW456L13_695at 791.421 kb on - strand, within PfGW456L13_695at 791.421 kb on - strand, within PfGW456L13_695at 791.421 kb on - strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.473 kb on + strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.474 kb on - strand, within PfGW456L13_695at 791.542 kb on + strand, within PfGW456L13_695at 791.542 kb on + strand, within PfGW456L13_695at 791.543 kb on - strand, within PfGW456L13_695at 791.543 kb on - strand, within PfGW456L13_695at 791.560 kb on + strand, within PfGW456L13_695at 791.561 kb on - strand, within PfGW456L13_695at 791.561 kb on - strand, within PfGW456L13_695at 791.599 kb on + strand, within PfGW456L13_695at 791.600 kb on - strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.749 kb on + strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.750 kb on - strand, within PfGW456L13_695at 791.980 kb on + strand, within PfGW456L13_695at 791.980 kb on + strand, within PfGW456L13_695at 791.980 kb on + strand, within PfGW456L13_695at 791.980 kb on + strand, within PfGW456L13_695at 791.980 kb on + strand, within PfGW456L13_695at 791.980 kb on + strand, within PfGW456L13_695at 791.980 kb on + strand, within PfGW456L13_695at 791.980 kb on + strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.981 kb on - strand, within PfGW456L13_695at 791.989 kb on + strand, within PfGW456L13_695at 791.989 kb on + strand, within PfGW456L13_695at 791.989 kb on + strand, within PfGW456L13_695at 791.989 kb on + strand, within PfGW456L13_695at 791.989 kb on + strand, within PfGW456L13_695at 791.990 kb on - strand, within PfGW456L13_695at 791.990 kb on - strand, within PfGW456L13_695at 791.990 kb on - strand, within PfGW456L13_695at 792.007 kb on + strandat 792.007 kb on + strandat 792.007 kb on + strandat 792.007 kb on + strandat 792.007 kb on + strandat 792.008 kb on - strandat 792.008 kb on - strandat 792.008 kb on - strandat 792.008 kb on - strandat 792.008 kb on - strandat 792.008 kb on - strandat 792.008 kb on - strandat 792.008 kb on - strandat 792.076 kb on + strandat 792.077 kb on - strandat 792.077 kb on - strandat 792.077 kb on - strandat 792.121 kb on + strandat 792.121 kb on + strandat 792.121 kb on + strandat 792.122 kb on - strandat 792.134 kb on + strandat 792.135 kb on - strandat 792.149 kb on + strandat 792.150 kb on - strandat 792.344 kb on + strand, within PfGW456L13_696at 792.344 kb on + strand, within PfGW456L13_696at 792.345 kb on - strand, within PfGW456L13_696at 792.345 kb on - strand, within PfGW456L13_696at 792.372 kb on + strand, within PfGW456L13_696at 792.373 kb on - strand, within PfGW456L13_696at 792.625 kb on + strand, within PfGW456L13_696at 792.708 kb on + strand, within PfGW456L13_696at 792.800 kb on + strandat 792.800 kb on + strandat 792.800 kb on + strandat 792.800 kb on + strandat 792.801 kb on - strandat 792.801 kb on - strandat 792.801 kb on - strandat 792.936 kb on - strandat 792.943 kb on + strandat 792.955 kb on + strandat 792.956 kb on - strandat 793.143 kb on - strand, within PfGW456L13_697at 793.216 kb on + strand, within PfGW456L13_697at 793.216 kb on + strand, within PfGW456L13_697at 793.216 kb on + strand, within PfGW456L13_697at 793.216 kb on + strand, within PfGW456L13_697at 793.217 kb on - strand, within PfGW456L13_697at 793.317 kb on + strand, within PfGW456L13_697at 793.318 kb on - strand, within PfGW456L13_697at 793.318 kb on - strand, within PfGW456L13_697at 793.340 kb on + strand, within PfGW456L13_697at 793.340 kb on + strand, within PfGW456L13_697at 793.341 kb on - strand, within PfGW456L13_697at 793.414 kb on + strand, within PfGW456L13_697at 793.414 kb on + strand, within PfGW456L13_697at 793.414 kb on + strand, within PfGW456L13_697at 793.415 kb on - strandat 793.415 kb on - strandat 793.415 kb on - strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.460 kb on + strandat 793.461 kb on - strandat 793.504 kb on + strandat 793.504 kb on + strandat 793.504 kb on + strandat 793.505 kb on - strandat 793.505 kb on - strandat 793.505 kb on - strandat 793.505 kb on - strandat 793.505 kb on - strandat 793.547 kb on + strandat 793.548 kb on - strandat 793.548 kb on - strandat 793.576 kb on + strandat 793.576 kb on + strandat 793.576 kb on + strandat 793.576 kb on + strandat 793.577 kb on - strandat 793.577 kb on - strandat 793.577 kb on - strandat 793.577 kb on - strandat 793.577 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB control
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791,245 + PfGW456L13_695 0.54 +0.7
791,246 - PfGW456L13_695 0.54 +0.3
791,338 + PfGW456L13_695 0.59 -0.3
791,356 + PfGW456L13_695 0.60 -1.6
791,356 + PfGW456L13_695 0.60 -0.9
791,357 - PfGW456L13_695 0.60 -0.3
791,357 - PfGW456L13_695 0.60 -0.7
791,357 - PfGW456L13_695 0.60 -0.6
791,357 - PfGW456L13_695 0.60 +1.0
791,417 - PfGW456L13_695 0.63 -0.0
791,417 - PfGW456L13_695 0.63 -0.0
791,420 + PfGW456L13_695 0.63 +0.1
791,420 + PfGW456L13_695 0.63 +1.8
791,420 + PfGW456L13_695 0.63 -0.4
791,420 + PfGW456L13_695 0.63 -0.5
791,421 - PfGW456L13_695 0.63 +1.0
791,421 - PfGW456L13_695 0.63 +0.6
791,421 - PfGW456L13_695 0.63 -0.2
791,421 - PfGW456L13_695 0.63 -1.1
791,421 - PfGW456L13_695 0.63 -1.1
791,421 - PfGW456L13_695 0.63 -0.8
791,421 - PfGW456L13_695 0.63 +0.2
791,421 - PfGW456L13_695 0.63 -0.6
791,421 - PfGW456L13_695 0.63 -0.8
791,473 + PfGW456L13_695 0.65 -0.5
791,473 + PfGW456L13_695 0.65 -0.4
791,473 + PfGW456L13_695 0.65 +0.0
791,473 + PfGW456L13_695 0.65 -0.0
791,473 + PfGW456L13_695 0.65 -0.0
791,473 + PfGW456L13_695 0.65 -0.3
791,473 + PfGW456L13_695 0.65 +1.1
791,473 + PfGW456L13_695 0.65 -0.0
791,473 + PfGW456L13_695 0.65 +1.0
791,473 + PfGW456L13_695 0.65 -0.1
791,473 + PfGW456L13_695 0.65 -0.2
791,473 + PfGW456L13_695 0.65 +0.0
791,473 + PfGW456L13_695 0.65 +0.3
791,473 + PfGW456L13_695 0.65 +0.5
791,473 + PfGW456L13_695 0.65 +0.6
791,473 + PfGW456L13_695 0.65 -0.8
791,473 + PfGW456L13_695 0.65 -0.6
791,473 + PfGW456L13_695 0.65 -0.1
791,473 + PfGW456L13_695 0.65 -0.9
791,473 + PfGW456L13_695 0.65 -0.8
791,473 + PfGW456L13_695 0.65 +0.7
791,473 + PfGW456L13_695 0.65 -0.3
791,473 + PfGW456L13_695 0.65 +0.2
791,473 + PfGW456L13_695 0.65 -0.1
791,473 + PfGW456L13_695 0.65 -1.6
791,473 + PfGW456L13_695 0.65 -0.0
791,473 + PfGW456L13_695 0.65 -0.3
791,473 + PfGW456L13_695 0.65 -0.3
791,473 + PfGW456L13_695 0.65 +0.7
791,473 + PfGW456L13_695 0.65 +0.0
791,473 + PfGW456L13_695 0.65 -0.9
791,474 - PfGW456L13_695 0.65 +0.4
791,474 - PfGW456L13_695 0.65 +0.1
791,474 - PfGW456L13_695 0.65 +0.8
791,474 - PfGW456L13_695 0.65 +0.5
791,474 - PfGW456L13_695 0.65 +0.1
791,474 - PfGW456L13_695 0.65 +0.1
791,474 - PfGW456L13_695 0.65 -1.4
791,474 - PfGW456L13_695 0.65 +0.0
791,474 - PfGW456L13_695 0.65 -2.0
791,474 - PfGW456L13_695 0.65 -0.0
791,474 - PfGW456L13_695 0.65 -1.0
791,474 - PfGW456L13_695 0.65 -0.6
791,474 - PfGW456L13_695 0.65 +0.3
791,474 - PfGW456L13_695 0.65 -0.2
791,474 - PfGW456L13_695 0.65 -2.1
791,474 - PfGW456L13_695 0.65 -0.1
791,474 - PfGW456L13_695 0.65 -0.0
791,474 - PfGW456L13_695 0.65 +0.1
791,474 - PfGW456L13_695 0.65 -0.8
791,474 - PfGW456L13_695 0.65 -0.4
791,474 - PfGW456L13_695 0.65 +0.4
791,474 - PfGW456L13_695 0.65 +0.2
791,542 + PfGW456L13_695 0.68 +0.3
791,542 + PfGW456L13_695 0.68 -0.3
791,543 - PfGW456L13_695 0.68 +0.1
791,543 - PfGW456L13_695 0.68 +0.2
791,560 + PfGW456L13_695 0.69 +0.9
791,561 - PfGW456L13_695 0.69 +0.2
791,561 - PfGW456L13_695 0.69 +0.1
791,599 + PfGW456L13_695 0.71 -1.1
791,600 - PfGW456L13_695 0.71 -0.4
791,749 + PfGW456L13_695 0.78 +0.1
791,749 + PfGW456L13_695 0.78 -0.1
791,749 + PfGW456L13_695 0.78 -1.1
791,749 + PfGW456L13_695 0.78 +0.7
791,749 + PfGW456L13_695 0.78 +0.5
791,749 + PfGW456L13_695 0.78 +0.3
791,749 + PfGW456L13_695 0.78 +0.5
791,749 + PfGW456L13_695 0.78 -0.2
791,749 + PfGW456L13_695 0.78 -0.9
791,749 + PfGW456L13_695 0.78 +0.2
791,749 + PfGW456L13_695 0.78 -1.6
791,749 + PfGW456L13_695 0.78 -0.9
791,749 + PfGW456L13_695 0.78 -0.3
791,749 + PfGW456L13_695 0.78 -0.1
791,749 + PfGW456L13_695 0.78 -0.0
791,750 - PfGW456L13_695 0.78 +0.9
791,750 - PfGW456L13_695 0.78 -0.0
791,750 - PfGW456L13_695 0.78 -2.0
791,750 - PfGW456L13_695 0.78 +0.6
791,750 - PfGW456L13_695 0.78 -0.1
791,750 - PfGW456L13_695 0.78 +0.0
791,750 - PfGW456L13_695 0.78 +0.6
791,750 - PfGW456L13_695 0.78 -0.2
791,750 - PfGW456L13_695 0.78 -2.5
791,750 - PfGW456L13_695 0.78 -0.6
791,750 - PfGW456L13_695 0.78 +0.1
791,750 - PfGW456L13_695 0.78 +0.9
791,750 - PfGW456L13_695 0.78 -0.5
791,750 - PfGW456L13_695 0.78 -0.6
791,980 + PfGW456L13_695 0.89 -0.1
791,980 + PfGW456L13_695 0.89 +1.0
791,980 + PfGW456L13_695 0.89 -0.2
791,980 + PfGW456L13_695 0.89 +0.4
791,980 + PfGW456L13_695 0.89 -0.1
791,980 + PfGW456L13_695 0.89 -0.8
791,980 + PfGW456L13_695 0.89 +0.3
791,980 + PfGW456L13_695 0.89 +1.1
791,981 - PfGW456L13_695 0.89 +0.6
791,981 - PfGW456L13_695 0.89 +0.5
791,981 - PfGW456L13_695 0.89 -0.2
791,981 - PfGW456L13_695 0.89 +0.1
791,981 - PfGW456L13_695 0.89 -1.9
791,981 - PfGW456L13_695 0.89 -3.2
791,981 - PfGW456L13_695 0.89 -0.4
791,981 - PfGW456L13_695 0.89 -1.2
791,981 - PfGW456L13_695 0.89 +0.1
791,981 - PfGW456L13_695 0.89 -0.2
791,981 - PfGW456L13_695 0.89 -0.3
791,981 - PfGW456L13_695 0.89 -0.3
791,989 + PfGW456L13_695 0.90 -0.1
791,989 + PfGW456L13_695 0.90 +0.1
791,989 + PfGW456L13_695 0.90 -0.6
791,989 + PfGW456L13_695 0.90 -0.2
791,989 + PfGW456L13_695 0.90 +0.0
791,990 - PfGW456L13_695 0.90 +0.5
791,990 - PfGW456L13_695 0.90 +0.8
791,990 - PfGW456L13_695 0.90 -0.4
792,007 + -1.5
792,007 + +0.7
792,007 + +0.5
792,007 + -0.4
792,007 + -0.6
792,008 - +0.3
792,008 - +0.5
792,008 - -1.0
792,008 - +0.2
792,008 - +0.1
792,008 - -0.9
792,008 - -0.3
792,008 - -0.8
792,076 + -0.7
792,077 - -0.6
792,077 - +0.7
792,077 - -0.1
792,121 + +0.3
792,121 + +1.0
792,121 + -0.2
792,122 - +1.0
792,134 + -0.0
792,135 - +0.0
792,149 + -0.6
792,150 - +0.4
792,344 + PfGW456L13_696 0.21 -0.8
792,344 + PfGW456L13_696 0.21 +1.3
792,345 - PfGW456L13_696 0.21 -0.9
792,345 - PfGW456L13_696 0.21 +0.3
792,372 + PfGW456L13_696 0.25 +0.0
792,373 - PfGW456L13_696 0.25 -1.2
792,625 + PfGW456L13_696 0.65 -0.2
792,708 + PfGW456L13_696 0.78 +0.2
792,800 + +0.5
792,800 + +0.8
792,800 + +0.3
792,800 + +0.3
792,801 - -0.4
792,801 - -0.2
792,801 - +0.5
792,936 - +0.6
792,943 + +0.2
792,955 + -0.7
792,956 - -0.6
793,143 - PfGW456L13_697 0.32 +0.6
793,216 + PfGW456L13_697 0.48 -0.3
793,216 + PfGW456L13_697 0.48 +0.1
793,216 + PfGW456L13_697 0.48 -0.8
793,216 + PfGW456L13_697 0.48 +0.1
793,217 - PfGW456L13_697 0.48 +1.1
793,317 + PfGW456L13_697 0.69 +0.6
793,318 - PfGW456L13_697 0.69 +0.5
793,318 - PfGW456L13_697 0.69 +0.2
793,340 + PfGW456L13_697 0.74 -0.7
793,340 + PfGW456L13_697 0.74 -0.7
793,341 - PfGW456L13_697 0.74 +0.8
793,414 + PfGW456L13_697 0.90 +0.1
793,414 + PfGW456L13_697 0.90 -0.5
793,414 + PfGW456L13_697 0.90 -0.7
793,415 - -0.5
793,415 - +0.3
793,415 - -0.6
793,460 + -1.6
793,460 + +1.3
793,460 + +0.0
793,460 + -0.5
793,460 + -0.6
793,461 - +0.6
793,504 + +0.0
793,504 + +1.8
793,504 + -0.6
793,505 - -0.7
793,505 - +0.5
793,505 - +1.0
793,505 - +0.6
793,505 - +0.8
793,547 + -1.0
793,548 - -0.6
793,548 - +1.2
793,576 + -0.0
793,576 + +0.1
793,576 + -0.4
793,576 + -0.2
793,577 - +0.7
793,577 - +0.1
793,577 - +0.6
793,577 - +0.2
793,577 - +0.1

Or see this region's nucleotide sequence