Experiment: LB control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4708 and PfGW456L13_4709 are separated by 140 nucleotides PfGW456L13_4709 and PfGW456L13_4710 are separated by 114 nucleotides PfGW456L13_4710 and PfGW456L13_4711 are separated by 41 nucleotides
PfGW456L13_4708 - SSU ribosomal protein S2p (SAe), at 5,247,096 to 5,247,833
_4708
PfGW456L13_4709 - hypothetical protein, at 5,247,974 to 5,248,090
_4709
PfGW456L13_4710 - Methionine aminopeptidase (EC 3.4.11.18), at 5,248,205 to 5,248,987
_4710
PfGW456L13_4711 - [Protein-PII] uridylyltransferase (EC 2.7.7.59), at 5,249,029 to 5,251,731
_4711
Position (kb)
5247
5248
5249 Strain fitness (log2 ratio)
-2
-1
0
1 at 5246.986 kb on - strand at 5247.000 kb on - strand at 5247.006 kb on - strand at 5247.098 kb on - strand at 5247.098 kb on - strand at 5247.098 kb on - strand at 5247.098 kb on - strand at 5248.069 kb on + strand, within PfGW456L13_4709 at 5248.069 kb on + strand, within PfGW456L13_4709 at 5248.069 kb on + strand, within PfGW456L13_4709 at 5248.070 kb on - strand, within PfGW456L13_4709 at 5248.070 kb on - strand, within PfGW456L13_4709 at 5248.070 kb on - strand, within PfGW456L13_4709 at 5248.070 kb on - strand, within PfGW456L13_4709 at 5248.118 kb on + strand at 5248.118 kb on + strand at 5248.999 kb on + strand at 5248.999 kb on + strand at 5248.999 kb on + strand at 5248.999 kb on + strand at 5248.999 kb on + strand at 5248.999 kb on + strand at 5248.999 kb on + strand at 5249.000 kb on - strand at 5249.008 kb on + strand at 5249.009 kb on - strand at 5249.010 kb on + strand at 5249.010 kb on + strand at 5249.011 kb on - strand at 5249.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB control remove 5,246,986 - -0.3 5,247,000 - +0.9 5,247,006 - +0.3 5,247,098 - -0.8 5,247,098 - +0.1 5,247,098 - +0.4 5,247,098 - +0.5 5,248,069 + PfGW456L13_4709 0.81 -0.3 5,248,069 + PfGW456L13_4709 0.81 +0.6 5,248,069 + PfGW456L13_4709 0.81 -1.0 5,248,070 - PfGW456L13_4709 0.82 +0.8 5,248,070 - PfGW456L13_4709 0.82 +0.5 5,248,070 - PfGW456L13_4709 0.82 +0.3 5,248,070 - PfGW456L13_4709 0.82 +1.6 5,248,118 + +1.7 5,248,118 + -0.1 5,248,999 + -0.5 5,248,999 + -1.8 5,248,999 + +1.4 5,248,999 + -0.4 5,248,999 + -0.1 5,248,999 + +0.3 5,248,999 + -0.2 5,249,000 - -0.2 5,249,008 + +1.4 5,249,009 - +0.3 5,249,010 + -1.4 5,249,010 + -1.9 5,249,011 - +1.0 5,249,011 - +0.2
Or see this region's nucleotide sequence